data_1O4X # _entry.id 1O4X # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O4X pdb_00001o4x 10.2210/pdb1o4x/pdb RCSB RCSB001808 ? ? WWPDB D_1000001808 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-01-27 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list 5 4 'Structure model' struct_ref_seq_dif 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1O4X _pdbx_database_status.recvd_initial_deposition_date 2003-07-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_mr REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Clore, G.M.' 1 'Williams, D.C.' 2 # _citation.id primary _citation.title ;Molecular basis for synergistic transcriptional activation by Oct1 and Sox2 revealed from the solution structure of the 42-kDa Oct1.Sox2.Hoxb1-DNA ternary transcription factor complex. ; _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 279 _citation.page_first 1449 _citation.page_last 1457 _citation.year 2004 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14559893 _citation.pdbx_database_id_DOI 10.1074/jbc.M309790200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Williams, D.C.' 1 ? primary 'Cai, M.' 2 ? primary 'Clore, G.M.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*TP*GP*TP*CP*TP*TP*TP*GP*TP*CP*AP*TP*GP*CP*TP*AP*AP*TP*G)-3'" 5816.767 1 ? C61A ? ? 2 polymer syn "5'-D(*CP*AP*TP*TP*AP*GP*CP*AP*TP*GP*AP*CP*AP*AP*AP*GP*AP*CP*A)-3'" 5830.827 1 ? ? ? ? 3 polymer man 'transcription factor Oct-1' 19081.643 1 ? ? ? ? 4 polymer man 'Transcription factor SOX-2' 10717.653 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DT)(DG)(DT)(DC)(DT)(DT)(DT)(DG)(DT)(DC)(DA)(DT)(DG)(DC)(DT)(DA)(DA)(DT)(DG)' TGTCTTTGTCATGCTAATG C ? 2 polydeoxyribonucleotide no no '(DC)(DA)(DT)(DT)(DA)(DG)(DC)(DA)(DT)(DG)(DA)(DC)(DA)(DA)(DA)(DG)(DA)(DC)(DA)' CATTAGCATGACAAAGACA D ? 3 'polypeptide(L)' no no ;GSHMEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMAKLKPLLEKWLNDAEN LSSDSSLSSPSALNSPGIEGLSERRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEK RINPPSS ; ;GSHMEEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMAKLKPLLEKWLNDAEN LSSDSSLSSPSALNSPGIEGLSERRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEK RINPPSS ; A ? 4 'polypeptide(L)' no no ;GSHMPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR RKTKTLMK ; ;GSHMPDRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPR RKTKTLMK ; B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DT n 1 4 DC n 1 5 DT n 1 6 DT n 1 7 DT n 1 8 DG n 1 9 DT n 1 10 DC n 1 11 DA n 1 12 DT n 1 13 DG n 1 14 DC n 1 15 DT n 1 16 DA n 1 17 DA n 1 18 DT n 1 19 DG n 2 1 DC n 2 2 DA n 2 3 DT n 2 4 DT n 2 5 DA n 2 6 DG n 2 7 DC n 2 8 DA n 2 9 DT n 2 10 DG n 2 11 DA n 2 12 DC n 2 13 DA n 2 14 DA n 2 15 DA n 2 16 DG n 2 17 DA n 2 18 DC n 2 19 DA n 3 1 GLY n 3 2 SER n 3 3 HIS n 3 4 MET n 3 5 GLU n 3 6 GLU n 3 7 PRO n 3 8 SER n 3 9 ASP n 3 10 LEU n 3 11 GLU n 3 12 GLU n 3 13 LEU n 3 14 GLU n 3 15 GLN n 3 16 PHE n 3 17 ALA n 3 18 LYS n 3 19 THR n 3 20 PHE n 3 21 LYS n 3 22 GLN n 3 23 ARG n 3 24 ARG n 3 25 ILE n 3 26 LYS n 3 27 LEU n 3 28 GLY n 3 29 PHE n 3 30 THR n 3 31 GLN n 3 32 GLY n 3 33 ASP n 3 34 VAL n 3 35 GLY n 3 36 LEU n 3 37 ALA n 3 38 MET n 3 39 GLY n 3 40 LYS n 3 41 LEU n 3 42 TYR n 3 43 GLY n 3 44 ASN n 3 45 ASP n 3 46 PHE n 3 47 SER n 3 48 GLN n 3 49 THR n 3 50 THR n 3 51 ILE n 3 52 SER n 3 53 ARG n 3 54 PHE n 3 55 GLU n 3 56 ALA n 3 57 LEU n 3 58 ASN n 3 59 LEU n 3 60 SER n 3 61 PHE n 3 62 LYS n 3 63 ASN n 3 64 MET n 3 65 ALA n 3 66 LYS n 3 67 LEU n 3 68 LYS n 3 69 PRO n 3 70 LEU n 3 71 LEU n 3 72 GLU n 3 73 LYS n 3 74 TRP n 3 75 LEU n 3 76 ASN n 3 77 ASP n 3 78 ALA n 3 79 GLU n 3 80 ASN n 3 81 LEU n 3 82 SER n 3 83 SER n 3 84 ASP n 3 85 SER n 3 86 SER n 3 87 LEU n 3 88 SER n 3 89 SER n 3 90 PRO n 3 91 SER n 3 92 ALA n 3 93 LEU n 3 94 ASN n 3 95 SER n 3 96 PRO n 3 97 GLY n 3 98 ILE n 3 99 GLU n 3 100 GLY n 3 101 LEU n 3 102 SER n 3 103 GLU n 3 104 ARG n 3 105 ARG n 3 106 LYS n 3 107 LYS n 3 108 ARG n 3 109 THR n 3 110 SER n 3 111 ILE n 3 112 GLU n 3 113 THR n 3 114 ASN n 3 115 ILE n 3 116 ARG n 3 117 VAL n 3 118 ALA n 3 119 LEU n 3 120 GLU n 3 121 LYS n 3 122 SER n 3 123 PHE n 3 124 LEU n 3 125 GLU n 3 126 ASN n 3 127 GLN n 3 128 LYS n 3 129 PRO n 3 130 THR n 3 131 SER n 3 132 GLU n 3 133 GLU n 3 134 ILE n 3 135 THR n 3 136 MET n 3 137 ILE n 3 138 ALA n 3 139 ASP n 3 140 GLN n 3 141 LEU n 3 142 ASN n 3 143 MET n 3 144 GLU n 3 145 LYS n 3 146 GLU n 3 147 VAL n 3 148 ILE n 3 149 ARG n 3 150 VAL n 3 151 TRP n 3 152 PHE n 3 153 CYS n 3 154 ASN n 3 155 ARG n 3 156 ARG n 3 157 GLN n 3 158 LYS n 3 159 GLU n 3 160 LYS n 3 161 ARG n 3 162 ILE n 3 163 ASN n 3 164 PRO n 3 165 PRO n 3 166 SER n 3 167 SER n 4 1 GLY n 4 2 SER n 4 3 HIS n 4 4 MET n 4 5 PRO n 4 6 ASP n 4 7 ARG n 4 8 VAL n 4 9 LYS n 4 10 ARG n 4 11 PRO n 4 12 MET n 4 13 ASN n 4 14 ALA n 4 15 PHE n 4 16 MET n 4 17 VAL n 4 18 TRP n 4 19 SER n 4 20 ARG n 4 21 GLY n 4 22 GLN n 4 23 ARG n 4 24 ARG n 4 25 LYS n 4 26 MET n 4 27 ALA n 4 28 GLN n 4 29 GLU n 4 30 ASN n 4 31 PRO n 4 32 LYS n 4 33 MET n 4 34 HIS n 4 35 ASN n 4 36 SER n 4 37 GLU n 4 38 ILE n 4 39 SER n 4 40 LYS n 4 41 ARG n 4 42 LEU n 4 43 GLY n 4 44 ALA n 4 45 GLU n 4 46 TRP n 4 47 LYS n 4 48 LEU n 4 49 LEU n 4 50 SER n 4 51 GLU n 4 52 THR n 4 53 GLU n 4 54 LYS n 4 55 ARG n 4 56 PRO n 4 57 PHE n 4 58 ILE n 4 59 ASP n 4 60 GLU n 4 61 ALA n 4 62 LYS n 4 63 ARG n 4 64 LEU n 4 65 ARG n 4 66 ALA n 4 67 LEU n 4 68 HIS n 4 69 MET n 4 70 LYS n 4 71 GLU n 4 72 HIS n 4 73 PRO n 4 74 ASP n 4 75 TYR n 4 76 LYS n 4 77 TYR n 4 78 ARG n 4 79 PRO n 4 80 ARG n 4 81 ARG n 4 82 LYS n 4 83 THR n 4 84 LYS n 4 85 THR n 4 86 LEU n 4 87 MET n 4 88 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 3 1 sample ? ? ? human Homo ? ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 4 1 sample ? ? ? human Homo SOX2 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 301 301 DT THY C . n A 1 2 DG 2 302 302 DG GUA C . n A 1 3 DT 3 303 303 DT THY C . n A 1 4 DC 4 304 304 DC CYT C . n A 1 5 DT 5 305 305 DT THY C . n A 1 6 DT 6 306 306 DT THY C . n A 1 7 DT 7 307 307 DT THY C . n A 1 8 DG 8 308 308 DG GUA C . n A 1 9 DT 9 309 309 DT THY C . n A 1 10 DC 10 310 310 DC CYT C . n A 1 11 DA 11 311 311 DA ADE C . n A 1 12 DT 12 312 312 DT THY C . n A 1 13 DG 13 313 313 DG GUA C . n A 1 14 DC 14 314 314 DC CYT C . n A 1 15 DT 15 315 315 DT THY C . n A 1 16 DA 16 316 316 DA ADE C . n A 1 17 DA 17 317 317 DA ADE C . n A 1 18 DT 18 318 318 DT THY C . n A 1 19 DG 19 319 319 DG GUA C . n B 2 1 DC 1 320 320 DC CYT D . n B 2 2 DA 2 321 321 DA ADE D . n B 2 3 DT 3 322 322 DT THY D . n B 2 4 DT 4 323 323 DT THY D . n B 2 5 DA 5 324 324 DA ADE D . n B 2 6 DG 6 325 325 DG GUA D . n B 2 7 DC 7 326 326 DC CYT D . n B 2 8 DA 8 327 327 DA ADE D . n B 2 9 DT 9 328 328 DT THY D . n B 2 10 DG 10 329 329 DG GUA D . n B 2 11 DA 11 330 330 DA ADE D . n B 2 12 DC 12 331 331 DC CYT D . n B 2 13 DA 13 332 332 DA ADE D . n B 2 14 DA 14 333 333 DA ADE D . n B 2 15 DA 15 334 334 DA ADE D . n B 2 16 DG 16 335 335 DG GUA D . n B 2 17 DA 17 336 336 DA ADE D . n B 2 18 DC 18 337 337 DC CYT D . n B 2 19 DA 19 338 338 DA ADE D . n C 3 1 GLY 1 1 ? ? ? A . n C 3 2 SER 2 2 ? ? ? A . n C 3 3 HIS 3 3 ? ? ? A . n C 3 4 MET 4 4 ? ? ? A . n C 3 5 GLU 5 5 5 GLU GLU A . n C 3 6 GLU 6 6 6 GLU GLU A . n C 3 7 PRO 7 7 7 PRO PRO A . n C 3 8 SER 8 8 8 SER SER A . n C 3 9 ASP 9 9 9 ASP ASP A . n C 3 10 LEU 10 10 10 LEU LEU A . n C 3 11 GLU 11 11 11 GLU GLU A . n C 3 12 GLU 12 12 12 GLU GLU A . n C 3 13 LEU 13 13 13 LEU LEU A . n C 3 14 GLU 14 14 14 GLU GLU A . n C 3 15 GLN 15 15 15 GLN GLN A . n C 3 16 PHE 16 16 16 PHE PHE A . n C 3 17 ALA 17 17 17 ALA ALA A . n C 3 18 LYS 18 18 18 LYS LYS A . n C 3 19 THR 19 19 19 THR THR A . n C 3 20 PHE 20 20 20 PHE PHE A . n C 3 21 LYS 21 21 21 LYS LYS A . n C 3 22 GLN 22 22 22 GLN GLN A . n C 3 23 ARG 23 23 23 ARG ARG A . n C 3 24 ARG 24 24 24 ARG ARG A . n C 3 25 ILE 25 25 25 ILE ILE A . n C 3 26 LYS 26 26 26 LYS LYS A . n C 3 27 LEU 27 27 27 LEU LEU A . n C 3 28 GLY 28 28 28 GLY GLY A . n C 3 29 PHE 29 29 29 PHE PHE A . n C 3 30 THR 30 30 30 THR THR A . n C 3 31 GLN 31 31 31 GLN GLN A . n C 3 32 GLY 32 32 32 GLY GLY A . n C 3 33 ASP 33 33 33 ASP ASP A . n C 3 34 VAL 34 34 34 VAL VAL A . n C 3 35 GLY 35 35 35 GLY GLY A . n C 3 36 LEU 36 36 36 LEU LEU A . n C 3 37 ALA 37 37 37 ALA ALA A . n C 3 38 MET 38 38 38 MET MET A . n C 3 39 GLY 39 39 39 GLY GLY A . n C 3 40 LYS 40 40 40 LYS LYS A . n C 3 41 LEU 41 41 41 LEU LEU A . n C 3 42 TYR 42 42 42 TYR TYR A . n C 3 43 GLY 43 43 43 GLY GLY A . n C 3 44 ASN 44 44 44 ASN ASN A . n C 3 45 ASP 45 45 45 ASP ASP A . n C 3 46 PHE 46 46 46 PHE PHE A . n C 3 47 SER 47 47 47 SER SER A . n C 3 48 GLN 48 48 48 GLN GLN A . n C 3 49 THR 49 49 49 THR THR A . n C 3 50 THR 50 50 50 THR THR A . n C 3 51 ILE 51 51 51 ILE ILE A . n C 3 52 SER 52 52 52 SER SER A . n C 3 53 ARG 53 53 53 ARG ARG A . n C 3 54 PHE 54 54 54 PHE PHE A . n C 3 55 GLU 55 55 55 GLU GLU A . n C 3 56 ALA 56 56 56 ALA ALA A . n C 3 57 LEU 57 57 57 LEU LEU A . n C 3 58 ASN 58 58 58 ASN ASN A . n C 3 59 LEU 59 59 59 LEU LEU A . n C 3 60 SER 60 60 60 SER SER A . n C 3 61 PHE 61 61 61 PHE PHE A . n C 3 62 LYS 62 62 62 LYS LYS A . n C 3 63 ASN 63 63 63 ASN ASN A . n C 3 64 MET 64 64 64 MET MET A . n C 3 65 ALA 65 65 65 ALA ALA A . n C 3 66 LYS 66 66 66 LYS LYS A . n C 3 67 LEU 67 67 67 LEU LEU A . n C 3 68 LYS 68 68 68 LYS LYS A . n C 3 69 PRO 69 69 69 PRO PRO A . n C 3 70 LEU 70 70 70 LEU LEU A . n C 3 71 LEU 71 71 71 LEU LEU A . n C 3 72 GLU 72 72 72 GLU GLU A . n C 3 73 LYS 73 73 73 LYS LYS A . n C 3 74 TRP 74 74 74 TRP TRP A . n C 3 75 LEU 75 75 75 LEU LEU A . n C 3 76 ASN 76 76 76 ASN ASN A . n C 3 77 ASP 77 77 77 ASP ASP A . n C 3 78 ALA 78 78 78 ALA ALA A . n C 3 79 GLU 79 79 79 GLU GLU A . n C 3 80 ASN 80 80 ? ? ? A . n C 3 81 LEU 81 81 ? ? ? A . n C 3 82 SER 82 82 ? ? ? A . n C 3 83 SER 83 83 ? ? ? A . n C 3 84 ASP 84 84 ? ? ? A . n C 3 85 SER 85 85 ? ? ? A . n C 3 86 SER 86 86 ? ? ? A . n C 3 87 LEU 87 87 ? ? ? A . n C 3 88 SER 88 88 ? ? ? A . n C 3 89 SER 89 89 ? ? ? A . n C 3 90 PRO 90 90 ? ? ? A . n C 3 91 SER 91 91 ? ? ? A . n C 3 92 ALA 92 92 ? ? ? A . n C 3 93 LEU 93 93 ? ? ? A . n C 3 94 ASN 94 94 ? ? ? A . n C 3 95 SER 95 95 ? ? ? A . n C 3 96 PRO 96 96 ? ? ? A . n C 3 97 GLY 97 97 ? ? ? A . n C 3 98 ILE 98 98 ? ? ? A . n C 3 99 GLU 99 99 ? ? ? A . n C 3 100 GLY 100 100 ? ? ? A . n C 3 101 LEU 101 101 ? ? ? A . n C 3 102 SER 102 102 ? ? ? A . n C 3 103 GLU 103 103 ? ? ? A . n C 3 104 ARG 104 104 ? ? ? A . n C 3 105 ARG 105 105 ? ? ? A . n C 3 106 LYS 106 106 ? ? ? A . n C 3 107 LYS 107 107 ? ? ? A . n C 3 108 ARG 108 108 ? ? ? A . n C 3 109 THR 109 109 ? ? ? A . n C 3 110 SER 110 110 110 SER SER A . n C 3 111 ILE 111 111 111 ILE ILE A . n C 3 112 GLU 112 112 112 GLU GLU A . n C 3 113 THR 113 113 113 THR THR A . n C 3 114 ASN 114 114 114 ASN ASN A . n C 3 115 ILE 115 115 115 ILE ILE A . n C 3 116 ARG 116 116 116 ARG ARG A . n C 3 117 VAL 117 117 117 VAL VAL A . n C 3 118 ALA 118 118 118 ALA ALA A . n C 3 119 LEU 119 119 119 LEU LEU A . n C 3 120 GLU 120 120 120 GLU GLU A . n C 3 121 LYS 121 121 121 LYS LYS A . n C 3 122 SER 122 122 122 SER SER A . n C 3 123 PHE 123 123 123 PHE PHE A . n C 3 124 LEU 124 124 124 LEU LEU A . n C 3 125 GLU 125 125 125 GLU GLU A . n C 3 126 ASN 126 126 126 ASN ASN A . n C 3 127 GLN 127 127 127 GLN GLN A . n C 3 128 LYS 128 128 128 LYS LYS A . n C 3 129 PRO 129 129 129 PRO PRO A . n C 3 130 THR 130 130 130 THR THR A . n C 3 131 SER 131 131 131 SER SER A . n C 3 132 GLU 132 132 132 GLU GLU A . n C 3 133 GLU 133 133 133 GLU GLU A . n C 3 134 ILE 134 134 134 ILE ILE A . n C 3 135 THR 135 135 135 THR THR A . n C 3 136 MET 136 136 136 MET MET A . n C 3 137 ILE 137 137 137 ILE ILE A . n C 3 138 ALA 138 138 138 ALA ALA A . n C 3 139 ASP 139 139 139 ASP ASP A . n C 3 140 GLN 140 140 140 GLN GLN A . n C 3 141 LEU 141 141 141 LEU LEU A . n C 3 142 ASN 142 142 142 ASN ASN A . n C 3 143 MET 143 143 143 MET MET A . n C 3 144 GLU 144 144 144 GLU GLU A . n C 3 145 LYS 145 145 145 LYS LYS A . n C 3 146 GLU 146 146 146 GLU GLU A . n C 3 147 VAL 147 147 147 VAL VAL A . n C 3 148 ILE 148 148 148 ILE ILE A . n C 3 149 ARG 149 149 149 ARG ARG A . n C 3 150 VAL 150 150 150 VAL VAL A . n C 3 151 TRP 151 151 151 TRP TRP A . n C 3 152 PHE 152 152 152 PHE PHE A . n C 3 153 CYS 153 153 153 CYS CYS A . n C 3 154 ASN 154 154 154 ASN ASN A . n C 3 155 ARG 155 155 155 ARG ARG A . n C 3 156 ARG 156 156 156 ARG ARG A . n C 3 157 GLN 157 157 157 GLN GLN A . n C 3 158 LYS 158 158 158 LYS LYS A . n C 3 159 GLU 159 159 159 GLU GLU A . n C 3 160 LYS 160 160 160 LYS LYS A . n C 3 161 ARG 161 161 161 ARG ARG A . n C 3 162 ILE 162 162 162 ILE ILE A . n C 3 163 ASN 163 163 163 ASN ASN A . n C 3 164 PRO 164 164 ? ? ? A . n C 3 165 PRO 165 165 ? ? ? A . n C 3 166 SER 166 166 ? ? ? A . n C 3 167 SER 167 167 ? ? ? A . n D 4 1 GLY 1 201 ? ? ? B . n D 4 2 SER 2 202 ? ? ? B . n D 4 3 HIS 3 203 ? ? ? B . n D 4 4 MET 4 204 ? ? ? B . n D 4 5 PRO 5 205 ? ? ? B . n D 4 6 ASP 6 206 206 ASP ASP B . n D 4 7 ARG 7 207 207 ARG ARG B . n D 4 8 VAL 8 208 208 VAL VAL B . n D 4 9 LYS 9 209 209 LYS LYS B . n D 4 10 ARG 10 210 210 ARG ARG B . n D 4 11 PRO 11 211 211 PRO PRO B . n D 4 12 MET 12 212 212 MET MET B . n D 4 13 ASN 13 213 213 ASN ASN B . n D 4 14 ALA 14 214 214 ALA ALA B . n D 4 15 PHE 15 215 215 PHE PHE B . n D 4 16 MET 16 216 216 MET MET B . n D 4 17 VAL 17 217 217 VAL VAL B . n D 4 18 TRP 18 218 218 TRP TRP B . n D 4 19 SER 19 219 219 SER SER B . n D 4 20 ARG 20 220 220 ARG ARG B . n D 4 21 GLY 21 221 221 GLY GLY B . n D 4 22 GLN 22 222 222 GLN GLN B . n D 4 23 ARG 23 223 223 ARG ARG B . n D 4 24 ARG 24 224 224 ARG ARG B . n D 4 25 LYS 25 225 225 LYS LYS B . n D 4 26 MET 26 226 226 MET MET B . n D 4 27 ALA 27 227 227 ALA ALA B . n D 4 28 GLN 28 228 228 GLN GLN B . n D 4 29 GLU 29 229 229 GLU GLU B . n D 4 30 ASN 30 230 230 ASN ASN B . n D 4 31 PRO 31 231 231 PRO PRO B . n D 4 32 LYS 32 232 232 LYS LYS B . n D 4 33 MET 33 233 233 MET MET B . n D 4 34 HIS 34 234 234 HIS HIS B . n D 4 35 ASN 35 235 235 ASN ASN B . n D 4 36 SER 36 236 236 SER SER B . n D 4 37 GLU 37 237 237 GLU GLU B . n D 4 38 ILE 38 238 238 ILE ILE B . n D 4 39 SER 39 239 239 SER SER B . n D 4 40 LYS 40 240 240 LYS LYS B . n D 4 41 ARG 41 241 241 ARG ARG B . n D 4 42 LEU 42 242 242 LEU LEU B . n D 4 43 GLY 43 243 243 GLY GLY B . n D 4 44 ALA 44 244 244 ALA ALA B . n D 4 45 GLU 45 245 245 GLU GLU B . n D 4 46 TRP 46 246 246 TRP TRP B . n D 4 47 LYS 47 247 247 LYS LYS B . n D 4 48 LEU 48 248 248 LEU LEU B . n D 4 49 LEU 49 249 249 LEU LEU B . n D 4 50 SER 50 250 250 SER SER B . n D 4 51 GLU 51 251 251 GLU GLU B . n D 4 52 THR 52 252 252 THR THR B . n D 4 53 GLU 53 253 253 GLU GLU B . n D 4 54 LYS 54 254 254 LYS LYS B . n D 4 55 ARG 55 255 255 ARG ARG B . n D 4 56 PRO 56 256 256 PRO PRO B . n D 4 57 PHE 57 257 257 PHE PHE B . n D 4 58 ILE 58 258 258 ILE ILE B . n D 4 59 ASP 59 259 259 ASP ASP B . n D 4 60 GLU 60 260 260 GLU GLU B . n D 4 61 ALA 61 261 261 ALA ALA B . n D 4 62 LYS 62 262 262 LYS LYS B . n D 4 63 ARG 63 263 263 ARG ARG B . n D 4 64 LEU 64 264 264 LEU LEU B . n D 4 65 ARG 65 265 265 ARG ARG B . n D 4 66 ALA 66 266 266 ALA ALA B . n D 4 67 LEU 67 267 267 LEU LEU B . n D 4 68 HIS 68 268 268 HIS HIS B . n D 4 69 MET 69 269 269 MET MET B . n D 4 70 LYS 70 270 270 LYS LYS B . n D 4 71 GLU 71 271 271 GLU GLU B . n D 4 72 HIS 72 272 272 HIS HIS B . n D 4 73 PRO 73 273 273 PRO PRO B . n D 4 74 ASP 74 274 274 ASP ASP B . n D 4 75 TYR 75 275 275 TYR TYR B . n D 4 76 LYS 76 276 276 LYS LYS B . n D 4 77 TYR 77 277 277 TYR TYR B . n D 4 78 ARG 78 278 278 ARG ARG B . n D 4 79 PRO 79 279 279 PRO PRO B . n D 4 80 ARG 80 280 280 ARG ARG B . n D 4 81 ARG 81 281 281 ARG ARG B . n D 4 82 LYS 82 282 282 LYS LYS B . n D 4 83 THR 83 283 ? ? ? B . n D 4 84 LYS 84 284 ? ? ? B . n D 4 85 THR 85 285 ? ? ? B . n D 4 86 LEU 86 286 ? ? ? B . n D 4 87 MET 87 287 ? ? ? B . n D 4 88 LYS 88 288 ? ? ? B . n # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 5 ? CG ? C GLU 5 CG 2 1 Y 1 A GLU 5 ? CD ? C GLU 5 CD 3 1 Y 1 A GLU 5 ? OE1 ? C GLU 5 OE1 4 1 Y 1 A GLU 5 ? OE2 ? C GLU 5 OE2 5 1 Y 1 A GLU 79 ? O ? C GLU 79 O 6 1 Y 1 A LYS 121 ? CG ? C LYS 121 CG 7 1 Y 1 A LYS 121 ? CD ? C LYS 121 CD 8 1 Y 1 A LYS 121 ? CE ? C LYS 121 CE 9 1 Y 1 A LYS 121 ? NZ ? C LYS 121 NZ 10 1 Y 1 A LYS 128 ? CG ? C LYS 128 CG 11 1 Y 1 A LYS 128 ? CD ? C LYS 128 CD 12 1 Y 1 A LYS 128 ? CE ? C LYS 128 CE 13 1 Y 1 A LYS 128 ? NZ ? C LYS 128 NZ 14 1 Y 1 A GLU 132 ? CG ? C GLU 132 CG 15 1 Y 1 A GLU 132 ? CD ? C GLU 132 CD 16 1 Y 1 A GLU 132 ? OE1 ? C GLU 132 OE1 17 1 Y 1 A GLU 132 ? OE2 ? C GLU 132 OE2 18 1 Y 1 A LYS 145 ? CG ? C LYS 145 CG 19 1 Y 1 A LYS 145 ? CD ? C LYS 145 CD 20 1 Y 1 A LYS 145 ? CE ? C LYS 145 CE 21 1 Y 1 A LYS 145 ? NZ ? C LYS 145 NZ 22 1 Y 1 A ASN 163 ? O ? C ASN 163 O # _exptl.entry_id 1O4X _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol ? _exptl_crystal.density_Matthews ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1O4X _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1O4X _struct.title ;TERNARY COMPLEX OF THE DNA BINDING DOMAINS OF THE OCT1 AND SOX2 TRANSCRIPTION FACTORS WITH A 19MER OLIGONUCLEOTIDE FROM THE HOXB1 REGULATORY ELEMENT ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1O4X _struct_keywords.pdbx_keywords TRANSCRIPTION/DNA _struct_keywords.text 'OCT1, POU, POUS, POUHD, SOX2, HMG-BOX, TRANSCRIPTION FACTORS, DNA, PROTEIN-DNA COMPLEX, TRANSCRIPTION-DNA COMPLEX' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP PO2F1_HUMAN P14859 3 ;EEPSDLEELEQFAKTFKQRRIKLGFTQGDVGLAMGKLYGNDFSQTTISRFEALNLSFKNMCKLKPLLEKWLNDAENLSSD SSLSSPSALNSPGIEGLSERRKKRTSIETNIRVALEKSFLENQKPTSEEITMIADQLNMEKEVIRVWFCNRRQKEKRINP PSS ; 303 ? 2 UNP SOX2_HUMAN P48431 4 ;DRVKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLSETEKRPFIDEAKRLRALHMKEHPDYKYRPRRKTKT LMK ; 39 ? 3 PDB 1O4X 1O4X 1 ? ? ? 4 PDB 1O4X 1O4X 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1O4X A 5 ? 167 ? P14859 303 ? 465 ? 5 167 2 2 1O4X B 6 ? 88 ? P48431 39 ? 121 ? 206 288 3 3 1O4X C 1 ? 19 ? 1O4X 301 ? 319 ? 301 319 4 4 1O4X D 1 ? 19 ? 1O4X 320 ? 338 ? 320 338 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1O4X GLY A 1 ? UNP P14859 ? ? 'cloning artifact' 1 1 1 1O4X SER A 2 ? UNP P14859 ? ? 'cloning artifact' 2 2 1 1O4X HIS A 3 ? UNP P14859 ? ? 'cloning artifact' 3 3 1 1O4X MET A 4 ? UNP P14859 ? ? 'cloning artifact' 4 4 1 1O4X ALA A 65 ? UNP P14859 CYS 363 'engineered mutation' 65 5 2 1O4X GLY B 1 ? UNP P48431 ? ? 'cloning artifact' 201 6 2 1O4X SER B 2 ? UNP P48431 ? ? 'cloning artifact' 202 7 2 1O4X HIS B 3 ? UNP P48431 ? ? 'cloning artifact' 203 8 2 1O4X MET B 4 ? UNP P48431 ? ? 'cloning artifact' 204 9 2 1O4X PRO B 5 ? UNP P48431 ? ? 'cloning artifact' 205 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP C 9 ? LEU C 27 ? ASP A 9 LEU A 27 1 ? 19 HELX_P HELX_P2 2 THR C 30 ? GLY C 43 ? THR A 30 GLY A 43 1 ? 14 HELX_P HELX_P3 3 SER C 47 ? LEU C 57 ? SER A 47 LEU A 57 1 ? 11 HELX_P HELX_P4 4 SER C 60 ? GLU C 79 ? SER A 60 GLU A 79 1 ? 20 HELX_P HELX_P5 5 GLU C 112 ? ASN C 126 ? GLU A 112 ASN A 126 1 ? 15 HELX_P HELX_P6 6 THR C 130 ? ASN C 142 ? THR A 130 ASN A 142 1 ? 13 HELX_P HELX_P7 7 GLU C 144 ? LYS C 160 ? GLU A 144 LYS A 160 1 ? 17 HELX_P HELX_P8 8 ASN D 13 ? ASN D 30 ? ASN B 213 ASN B 230 1 ? 18 HELX_P HELX_P9 9 HIS D 34 ? LYS D 47 ? HIS B 234 LYS B 247 1 ? 14 HELX_P HELX_P10 10 SER D 50 ? HIS D 72 ? SER B 250 HIS B 272 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 N3 ? ? ? 1_555 B DA 19 N1 ? ? C DT 301 D DA 338 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DA 19 N6 ? ? C DT 301 D DA 338 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 18 N3 ? ? C DG 302 D DC 337 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 18 O2 ? ? C DG 302 D DC 337 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 18 N4 ? ? C DG 302 D DC 337 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DT 3 N3 ? ? ? 1_555 B DA 17 N1 ? ? C DT 303 D DA 336 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DT 3 O4 ? ? ? 1_555 B DA 17 N6 ? ? C DT 303 D DA 336 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 4 N3 ? ? ? 1_555 B DG 16 N1 ? ? C DC 304 D DG 335 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 4 N4 ? ? ? 1_555 B DG 16 O6 ? ? C DC 304 D DG 335 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DC 4 O2 ? ? ? 1_555 B DG 16 N2 ? ? C DC 304 D DG 335 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DT 5 N3 ? ? ? 1_555 B DA 15 N1 ? ? C DT 305 D DA 334 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DT 5 O4 ? ? ? 1_555 B DA 15 N6 ? ? C DT 305 D DA 334 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DT 6 N3 ? ? ? 1_555 B DA 14 N1 ? ? C DT 306 D DA 333 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 6 O4 ? ? ? 1_555 B DA 14 N6 ? ? C DT 306 D DA 333 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 13 N1 ? ? C DT 307 D DA 332 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 13 N6 ? ? C DT 307 D DA 332 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 12 N3 ? ? C DG 308 D DC 331 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 12 O2 ? ? C DG 308 D DC 331 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 12 N4 ? ? C DG 308 D DC 331 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 9 N3 ? ? ? 1_555 B DA 11 N1 ? ? C DT 309 D DA 330 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 9 O4 ? ? ? 1_555 B DA 11 N6 ? ? C DT 309 D DA 330 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 10 N3 ? ? ? 1_555 B DG 10 N1 ? ? C DC 310 D DG 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 10 N4 ? ? ? 1_555 B DG 10 O6 ? ? C DC 310 D DG 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 10 O2 ? ? ? 1_555 B DG 10 N2 ? ? C DC 310 D DG 329 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DA 11 N1 ? ? ? 1_555 B DT 9 N3 ? ? C DA 311 D DT 328 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DA 11 N6 ? ? ? 1_555 B DT 9 O4 ? ? C DA 311 D DT 328 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 12 N3 ? ? ? 1_555 B DA 8 N1 ? ? C DT 312 D DA 327 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 12 O4 ? ? ? 1_555 B DA 8 N6 ? ? C DT 312 D DA 327 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DG 13 N1 ? ? ? 1_555 B DC 7 N3 ? ? C DG 313 D DC 326 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 13 N2 ? ? ? 1_555 B DC 7 O2 ? ? C DG 313 D DC 326 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 13 O6 ? ? ? 1_555 B DC 7 N4 ? ? C DG 313 D DC 326 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DC 14 N3 ? ? ? 1_555 B DG 6 N1 ? ? C DC 314 D DG 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A DC 14 N4 ? ? ? 1_555 B DG 6 O6 ? ? C DC 314 D DG 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A DC 14 O2 ? ? ? 1_555 B DG 6 N2 ? ? C DC 314 D DG 325 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A DT 15 N3 ? ? ? 1_555 B DA 5 N1 ? ? C DT 315 D DA 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A DT 15 O4 ? ? ? 1_555 B DA 5 N6 ? ? C DT 315 D DA 324 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog37 hydrog ? ? A DA 16 N1 ? ? ? 1_555 B DT 4 N3 ? ? C DA 316 D DT 323 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A DA 16 N6 ? ? ? 1_555 B DT 4 O4 ? ? C DA 316 D DT 323 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A DA 17 N1 ? ? ? 1_555 B DT 3 N3 ? ? C DA 317 D DT 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A DA 17 N6 ? ? ? 1_555 B DT 3 O4 ? ? C DA 317 D DT 322 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A DT 18 N3 ? ? ? 1_555 B DA 2 N1 ? ? C DT 318 D DA 321 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A DT 18 O4 ? ? ? 1_555 B DA 2 N6 ? ? C DT 318 D DA 321 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A DG 19 N1 ? ? ? 1_555 B DC 1 N3 ? ? C DG 319 D DC 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A DG 19 N2 ? ? ? 1_555 B DC 1 O2 ? ? C DG 319 D DC 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A DG 19 O6 ? ? ? 1_555 B DC 1 N4 ? ? C DG 319 D DC 320 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 OE2 B GLU 251 ? ? HH12 B ARG 255 ? ? 0.84 2 1 HD12 A LEU 13 ? ? HD2 A LYS 68 ? ? 1.24 3 1 HE21 A GLN 31 ? ? O A GLN 48 ? ? 1.28 4 1 HE2 B MET 233 ? ? HH22 B ARG 241 ? ? 1.32 5 1 HH12 A ARG 24 ? ? HB2 A GLN 31 ? ? 1.33 6 1 OD1 B ASN 213 ? ? H B MET 216 ? ? 1.44 7 1 O B SER 219 ? ? H B ARG 223 ? ? 1.50 8 1 OE2 B GLU 251 ? ? NH1 B ARG 255 ? ? 1.54 9 1 O A GLY 28 ? ? HZ3 B LYS 262 ? B 1.56 10 1 NE2 A GLN 31 ? ? O A GLN 48 ? ? 1.62 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 C DA 311 ? ? C2 C DA 311 ? ? N3 C DA 311 ? ? 126.27 129.30 -3.03 0.50 N 2 1 N1 D DA 321 ? ? C2 D DA 321 ? ? N3 D DA 321 ? ? 126.22 129.30 -3.08 0.50 N 3 1 C6 D DT 322 ? ? C5 D DT 322 ? ? C7 D DT 322 ? ? 119.08 122.90 -3.82 0.60 N 4 1 N1 D DA 324 ? ? C2 D DA 324 ? ? N3 D DA 324 ? ? 126.23 129.30 -3.07 0.50 N 5 1 N1 D DA 330 ? ? C2 D DA 330 ? ? N3 D DA 330 ? ? 126.24 129.30 -3.06 0.50 N 6 1 N1 D DA 332 ? ? C2 D DA 332 ? ? N3 D DA 332 ? ? 126.14 129.30 -3.16 0.50 N 7 1 N1 D DA 333 ? ? C2 D DA 333 ? ? N3 D DA 333 ? ? 126.25 129.30 -3.05 0.50 N 8 1 N1 D DA 334 ? ? C2 D DA 334 ? ? N3 D DA 334 ? ? 126.29 129.30 -3.01 0.50 N 9 1 N1 D DA 336 ? ? C2 D DA 336 ? ? N3 D DA 336 ? ? 126.13 129.30 -3.17 0.50 N # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id ARG _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 155 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.085 _pdbx_validate_planes.type 'SIDE CHAIN' # _pdbx_nmr_ensemble.entry_id 1O4X _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'REGULARIZED MEAN STRUCTURE' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303.00 _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pH 6.50 _pdbx_nmr_exptl_sample_conditions.ionic_strength '10 mM SODIUM PHOSPHATE' _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '1) TRIPLE RESONANCE FOR ASSIGNMENT OF PROTEIN' 1 2 1 '(2) QUANTITATIVE J CORRELATION FOR COUPLING CONSTANTS' 1 3 1 '(3) 3D HETERONUCLEAR SEPARATED' 1 4 1 'FILTERED NOE EXPTS' 1 5 1 '(4) IPAP EXPERIMENTS' 1 6 1 'TRIPLE RESONANC FOR DIPOLAR COUPLINGS. DIPOLAR COUPLINGS WERE MEASURED IN PHAGE PF1' 1 # _pdbx_nmr_refine.entry_id 1O4X _pdbx_nmr_refine.method 'CONJOINED RIGID BODY/TORSION ANGLE DYNAMICS' _pdbx_nmr_refine.details ;THE STRUCTURES WERE CALCULATED BY CONJOINED RIGID BODY/TORSION ANGLE DYNAMICS (SCHWIETERS & CLORE (2001) J.MAGN.RESON 152, 288-302). THE TARGET FUNCTION COMPRISES TERMS FOR THE DIPOLAR COUPLING RESTRAINTS (CLORE ET AL. J.MAGN.RESON. 131, 159-162 (1998); J.MAGN.RESON. 133, 216- 221(1998)), INTERMOLECULAR NOE RESTRAINTS AND TORSION ANGLE RESTRAINTS. THE NON-BONDED TERMS INCLUDE A QUARTIC VAN DER WAALS REPULSION TERM (NILGES ET AL. (1988) FEBS LETT. 229, 129-136), RADIUS OF GYRATION RESTRAINTS (KUSZEWSKI ET AL. (1999) J.AM.CHEM.SOC 121, 2337-2338) AT THE PROTEIN-PROTEIN AND PROTEIN-DNA INTERFACES, AND DATABASE TORSION ANGLE AND BASE-BASE POSITIONAL POTENTIALS OF MEAN FORCE (KUSZEWSKI ET AL. (2001) J.AM.CHEM.SOC 123, 3903-3918; CLORE & KUSZEWSKI (2003) J.AM.CHEM.SOC. 125, 1518-1525). THE STARTING COORDINATES FOR THE POUHD AND POUS DOMAINS OF OCT1 ARE TAKEN FROM THE 1.9 A RESOLUTION CRYSTAL STRUCTURE OF THE OCT1/MORE-DNA COMPLEX (1E3O) AND PLACED IN THE ORIENTATION OF THE 2.7 A RESOLUTION CRYSTAL STRUCTURE OF THE OCT1/PORE-DNA COMPLEX (1HFO) (REMENYI ET AL. (2001) MOL.CELL 8, 569-580). THE STARTING COORDINATES FOR SOX2 ARE DERIVED FROM THE NMR STRUCTURE OF THE RELATED BINARY SRY-DNA COMPLEX (1J46) (MURPHY ET AL. (2001) J.MOL.BIOL. 312, 481-499). THE STARTING COORDINATES FOR THE 19MER DNA WERE BUILT AS FOLLOWS: THE POUS AND POUHD HEMI-BINDING SITES (B.P. 11-14 AND 17-19, RESPECTIVELY) WERE DERIVED FROM THE 1.9 A RESIOLUTION STRUCTURE OF THE OCT1/MORE-DNA COMPLEX (1E3O); THE SOX2 BINDING SITE (B.P. 1-10) WAS DERIVED FROM THE NMR STRUCTURE OF THE BINARY SRY/DNA COMPLEX (1J46); AND THE INTERVENING SEQUENCES (B.P. 15-16) AND REGIONS CONTAINING SUBSTITUTIONS (B.P. 1, 4 AND 10) WERE DERIVED FROM CLASSICAL DNA. THE RESULTING MODEL WAS SUBJECTED TO REGULARIZATION. THE STRATEGY USED IN THE CONJOINED RIGID BODY/TORSION ANGLE DYNAMICS CALCULATIONS IS AS FOLLOWS: THERE ARE 4 RIGID BODIES: (1) BACKBONE AND NON-INTERFACIAL SIDE CHAINS OF POUHD + B.P. 17-19 OF THE DNA (2) BACKBONE AND NON-INTERFACIAL SIDE CHAINS OF POUS; (3) BACKBONE AND NON-INTERFACIAL SIDE CHAINS OF SOX2 + B.P. 1-4 OF THE DNA; (4) THE AXIS OF THE DIPOLAR COUPLING ALIGNMENT TENSOR. RIGID BODIES 1-3 HAVE ROTATIONAL AND TRANSLATIONAL DEGREES OF FREEDOM, WHILE RIGID BODY 4 IS GIVEN ONLY ROTATIONAL DEGREES OF FREEDOM. THE FOLLOWING SIDE CHAINS WERE GIVEN TORSIONAL DEGREES OF FREEDOM: (1) POUHD: 10 RESIDUES AT POUHD-DNA INTERFACE (RESIDUES 107, 108, 113, 144, 147, 148, 151, 154, 155 AND 158) WITH 24 SIDE C AIN TORSION ANGLES RESTRAINED TO WITHIN A RANGE OF +/-20 DEGREES OF VALUES IN BINARY OCT1/DNA COMPLEXES (2) POUS: (A) 6 RESIDUES AT POUS/SOX2 INTERFACE (RESIDUES 14, 17, 18, 21, 26 AND 52); (B) 14 RESIDUES AT POUS/DNA INTERFACE (RESIDUES 20, 27, 41, 42, 44, 45, 46, 48, 49, 54, 58, 59, 62 AND 63) WITH 35 SIDE CHAIN TORSION ANGLES RESTRAINED TO WITHIN A RANGE OF +/-20 DEGREES OF VALUES IN BINARY OCT1/DNA COMPLEXES (3) SOX2: (A) 7 RESIDUES AT POUS/SOX2 INTERFACE (RESIDUES 59, 62, 63, 66, 67, 71, 73); (B) 18 RESIDUES AT SOX2/DNA INTERFACE (RESIDUES 4, 6, 7, 8, 9, 10, 12, 13 17, 31, 35, 43, 44, 51, 55, 76, 78, 79) WITH 35 SIDE CHAIN TORSION ANGLES RESTRAINED TO WITHIN A RANGE OF +/-20 DEGREES OF VALUES IN BINARY SRY/DNA COMPLEXES. BASE PAIRS 5-16 OF THE DNA WERE GIVEN TORSIONAL DEGREES OF FREEDOM WITH 220 LOOSE BACKBONE PHOSPHODIESTER TORSION ANGLE RESTRAINTS TO PREVENT LOCAL MIRROR IMAGES (MURPHY ET AL. (2001) J.MOL.BIOL. 312, 481-499). THE NUMBERING SYSTEM IS AS FOLLOWS: OCT1 POUS DOMAIN: 5-79 OCT1 POUHD DOMAIN: 110-163 SOX-2 HMG-BOX: 206-282 RESIDUES 1-4, 80-109, 201-205 AND 283-288 ARE DISORDERED IN SOLUTION AND THUS NOT INCLUDED IN THE COORDINATES. IN THIS ENTRY THE LAST COLUMN REPRESENTS THE AVERAGE RMS DIFFERENCE BETWEEN THE INDIVIDUAL SIMULATED ANNEALING STRUCTURES AND THE MEAN COORDINATE POSITIONS. IT IS IMPORTANT TO NOTE THAT SINCE THE BACKBONE AND NON- INTERFACIAL SIECHAINS OF THE THREE PROTEIN DOMAINS ARE TREATED AS RIGID BODIES, THESE NUMBERS DO NOT TAKE INTO ACCOUNT THE ERRORS IN THE X-RAY COORDINATES OF OCT1 OR THE NMR COORDINATES OF THE HOMOLOGOUS SRY. RESIDUE NUMBERING: THIS FOLLOWS THE NUMBERING USED PREVIOUS STRUCTURAL WORK ON THE BINARY OCT1/DNA COMPLEX (KLEMM ET AL. (1994) CELL 77, 21-32; REMENYI ET AL. MOL.CELL (2001) 8, 569-580); AND THE BINARY SRY/DNA COMPLEX (MURPHY ET AL. (2001) J.MOL.BIOL. 312, 481-499). THE SIDECHAINS OF K18, Q22, K262, R265 AND K276 ARE IN MULTIPLE CONFORMATIONS. EXPERIMENTAL NMR RESTRAINTS: RESIDUAL DIPOLAR COUPLINGS: 345 (1) SOX2: 51 NH, 39 NC', 49 CaC' (2) POUS: 39 NH, 33 NC', 34 CaC' (3) POUHD: 39 NH, 34 NC', 27 CaC' INTERMOLECULAR NOE-DERIVED INTERPROTON DISTANCE RESTRAINTS: 67 (16, 48 AND 3 at POUS/SOX2, SOX2/DNA AND POUHD/DNA INTERFACES) TORSION ANGLE RESTRAINTS: 21 (18 AT POUS/SOX2 INTERFACE AND 3 AT SOX2/DNA INTERFACE). NH DIPOLAR COUPLING R-FACTORS TERNARY COMPLEX INDIVIDUAL DOMAINS SOX2 17.7% 16.5% POUS 16.7% 16.2% POUHD 17.7% 17.5% (THE VALUES GIVEN FOR THE INDIVIDUAL DOMAINS ARE CALCULATED USING A SEPARATED ALIGNMENT TENSOR FOR EACH DOMAIN AND ARE SIMPLY LISTED FOR REFERENCE. THE VALUES FOR THE TERNARY COMPLEX (USING THE RESTRAINED REGULARIZED MEAN COORDINATES) MAKE USE OF A SINGLE ALIGNMENT TENSOR FOR THE ENTIRE COMPLEX). NON-EXPERIMENTAL RESTRAINTS: (1) 220 LOOSE TORSION ANGLE RESTRAINTS FOR THE SUGAR-PHOSPHATE BACKBONE (2) 106 LOOSE TORSION ANGLE RESTRAINTS FOR SIDE CHAINS AT PROTEIN-DNA INTERFACES (3) 35 LOOSE DISTANCE RESTRAINTS AT THE POUS/DNA AND POUHD/DNA INTERFACES TO PRESERVE HYDROGEN BONDING INTERCATIONS AND SALT BRIDGES TO BASES AND PHOSPHATES (4) WEAK NCS RESTRAINT TO PROVIDE A TRANSLATIONAL RESTRANT BETWEEN POUS AND POUHD. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name 'X-PLOR NIH' _pdbx_nmr_software.version '(HTTP://NMR.CIT.NIH.GOV/XPLOR_NIH)' _pdbx_nmr_software.authors 'SCHWIETERS, KUSZEWSKI, TJANDRA, CLORE' _pdbx_nmr_software.ordinal 1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 1 ? C GLY 1 2 1 Y 1 A SER 2 ? C SER 2 3 1 Y 1 A HIS 3 ? C HIS 3 4 1 Y 1 A MET 4 ? C MET 4 5 1 Y 1 A ASN 80 ? C ASN 80 6 1 Y 1 A LEU 81 ? C LEU 81 7 1 Y 1 A SER 82 ? C SER 82 8 1 Y 1 A SER 83 ? C SER 83 9 1 Y 1 A ASP 84 ? C ASP 84 10 1 Y 1 A SER 85 ? C SER 85 11 1 Y 1 A SER 86 ? C SER 86 12 1 Y 1 A LEU 87 ? C LEU 87 13 1 Y 1 A SER 88 ? C SER 88 14 1 Y 1 A SER 89 ? C SER 89 15 1 Y 1 A PRO 90 ? C PRO 90 16 1 Y 1 A SER 91 ? C SER 91 17 1 Y 1 A ALA 92 ? C ALA 92 18 1 Y 1 A LEU 93 ? C LEU 93 19 1 Y 1 A ASN 94 ? C ASN 94 20 1 Y 1 A SER 95 ? C SER 95 21 1 Y 1 A PRO 96 ? C PRO 96 22 1 Y 1 A GLY 97 ? C GLY 97 23 1 Y 1 A ILE 98 ? C ILE 98 24 1 Y 1 A GLU 99 ? C GLU 99 25 1 Y 1 A GLY 100 ? C GLY 100 26 1 Y 1 A LEU 101 ? C LEU 101 27 1 Y 1 A SER 102 ? C SER 102 28 1 Y 1 A GLU 103 ? C GLU 103 29 1 Y 1 A ARG 104 ? C ARG 104 30 1 Y 1 A ARG 105 ? C ARG 105 31 1 Y 1 A LYS 106 ? C LYS 106 32 1 Y 1 A LYS 107 ? C LYS 107 33 1 Y 1 A ARG 108 ? C ARG 108 34 1 Y 1 A THR 109 ? C THR 109 35 1 Y 1 A PRO 164 ? C PRO 164 36 1 Y 1 A PRO 165 ? C PRO 165 37 1 Y 1 A SER 166 ? C SER 166 38 1 Y 1 A SER 167 ? C SER 167 39 1 Y 1 B GLY 201 ? D GLY 1 40 1 Y 1 B SER 202 ? D SER 2 41 1 Y 1 B HIS 203 ? D HIS 3 42 1 Y 1 B MET 204 ? D MET 4 43 1 Y 1 B PRO 205 ? D PRO 5 44 1 Y 1 B THR 283 ? D THR 83 45 1 Y 1 B LYS 284 ? D LYS 84 46 1 Y 1 B THR 285 ? D THR 85 47 1 Y 1 B LEU 286 ? D LEU 86 48 1 Y 1 B MET 287 ? D MET 87 49 1 Y 1 B LYS 288 ? D LYS 88 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 CYS N N N N 74 CYS CA C N R 75 CYS C C N N 76 CYS O O N N 77 CYS CB C N N 78 CYS SG S N N 79 CYS OXT O N N 80 CYS H H N N 81 CYS H2 H N N 82 CYS HA H N N 83 CYS HB2 H N N 84 CYS HB3 H N N 85 CYS HG H N N 86 CYS HXT H N N 87 DA OP3 O N N 88 DA P P N N 89 DA OP1 O N N 90 DA OP2 O N N 91 DA "O5'" O N N 92 DA "C5'" C N N 93 DA "C4'" C N R 94 DA "O4'" O N N 95 DA "C3'" C N S 96 DA "O3'" O N N 97 DA "C2'" C N N 98 DA "C1'" C N R 99 DA N9 N Y N 100 DA C8 C Y N 101 DA N7 N Y N 102 DA C5 C Y N 103 DA C6 C Y N 104 DA N6 N N N 105 DA N1 N Y N 106 DA C2 C Y N 107 DA N3 N Y N 108 DA C4 C Y N 109 DA HOP3 H N N 110 DA HOP2 H N N 111 DA "H5'" H N N 112 DA "H5''" H N N 113 DA "H4'" H N N 114 DA "H3'" H N N 115 DA "HO3'" H N N 116 DA "H2'" H N N 117 DA "H2''" H N N 118 DA "H1'" H N N 119 DA H8 H N N 120 DA H61 H N N 121 DA H62 H N N 122 DA H2 H N N 123 DC OP3 O N N 124 DC P P N N 125 DC OP1 O N N 126 DC OP2 O N N 127 DC "O5'" O N N 128 DC "C5'" C N N 129 DC "C4'" C N R 130 DC "O4'" O N N 131 DC "C3'" C N S 132 DC "O3'" O N N 133 DC "C2'" C N N 134 DC "C1'" C N R 135 DC N1 N N N 136 DC C2 C N N 137 DC O2 O N N 138 DC N3 N N N 139 DC C4 C N N 140 DC N4 N N N 141 DC C5 C N N 142 DC C6 C N N 143 DC HOP3 H N N 144 DC HOP2 H N N 145 DC "H5'" H N N 146 DC "H5''" H N N 147 DC "H4'" H N N 148 DC "H3'" H N N 149 DC "HO3'" H N N 150 DC "H2'" H N N 151 DC "H2''" H N N 152 DC "H1'" H N N 153 DC H41 H N N 154 DC H42 H N N 155 DC H5 H N N 156 DC H6 H N N 157 DG OP3 O N N 158 DG P P N N 159 DG OP1 O N N 160 DG OP2 O N N 161 DG "O5'" O N N 162 DG "C5'" C N N 163 DG "C4'" C N R 164 DG "O4'" O N N 165 DG "C3'" C N S 166 DG "O3'" O N N 167 DG "C2'" C N N 168 DG "C1'" C N R 169 DG N9 N Y N 170 DG C8 C Y N 171 DG N7 N Y N 172 DG C5 C Y N 173 DG C6 C N N 174 DG O6 O N N 175 DG N1 N N N 176 DG C2 C N N 177 DG N2 N N N 178 DG N3 N N N 179 DG C4 C Y N 180 DG HOP3 H N N 181 DG HOP2 H N N 182 DG "H5'" H N N 183 DG "H5''" H N N 184 DG "H4'" H N N 185 DG "H3'" H N N 186 DG "HO3'" H N N 187 DG "H2'" H N N 188 DG "H2''" H N N 189 DG "H1'" H N N 190 DG H8 H N N 191 DG H1 H N N 192 DG H21 H N N 193 DG H22 H N N 194 DT OP3 O N N 195 DT P P N N 196 DT OP1 O N N 197 DT OP2 O N N 198 DT "O5'" O N N 199 DT "C5'" C N N 200 DT "C4'" C N R 201 DT "O4'" O N N 202 DT "C3'" C N S 203 DT "O3'" O N N 204 DT "C2'" C N N 205 DT "C1'" C N R 206 DT N1 N N N 207 DT C2 C N N 208 DT O2 O N N 209 DT N3 N N N 210 DT C4 C N N 211 DT O4 O N N 212 DT C5 C N N 213 DT C7 C N N 214 DT C6 C N N 215 DT HOP3 H N N 216 DT HOP2 H N N 217 DT "H5'" H N N 218 DT "H5''" H N N 219 DT "H4'" H N N 220 DT "H3'" H N N 221 DT "HO3'" H N N 222 DT "H2'" H N N 223 DT "H2''" H N N 224 DT "H1'" H N N 225 DT H3 H N N 226 DT H71 H N N 227 DT H72 H N N 228 DT H73 H N N 229 DT H6 H N N 230 GLN N N N N 231 GLN CA C N S 232 GLN C C N N 233 GLN O O N N 234 GLN CB C N N 235 GLN CG C N N 236 GLN CD C N N 237 GLN OE1 O N N 238 GLN NE2 N N N 239 GLN OXT O N N 240 GLN H H N N 241 GLN H2 H N N 242 GLN HA H N N 243 GLN HB2 H N N 244 GLN HB3 H N N 245 GLN HG2 H N N 246 GLN HG3 H N N 247 GLN HE21 H N N 248 GLN HE22 H N N 249 GLN HXT H N N 250 GLU N N N N 251 GLU CA C N S 252 GLU C C N N 253 GLU O O N N 254 GLU CB C N N 255 GLU CG C N N 256 GLU CD C N N 257 GLU OE1 O N N 258 GLU OE2 O N N 259 GLU OXT O N N 260 GLU H H N N 261 GLU H2 H N N 262 GLU HA H N N 263 GLU HB2 H N N 264 GLU HB3 H N N 265 GLU HG2 H N N 266 GLU HG3 H N N 267 GLU HE2 H N N 268 GLU HXT H N N 269 GLY N N N N 270 GLY CA C N N 271 GLY C C N N 272 GLY O O N N 273 GLY OXT O N N 274 GLY H H N N 275 GLY H2 H N N 276 GLY HA2 H N N 277 GLY HA3 H N N 278 GLY HXT H N N 279 HIS N N N N 280 HIS CA C N S 281 HIS C C N N 282 HIS O O N N 283 HIS CB C N N 284 HIS CG C Y N 285 HIS ND1 N Y N 286 HIS CD2 C Y N 287 HIS CE1 C Y N 288 HIS NE2 N Y N 289 HIS OXT O N N 290 HIS H H N N 291 HIS H2 H N N 292 HIS HA H N N 293 HIS HB2 H N N 294 HIS HB3 H N N 295 HIS HD1 H N N 296 HIS HD2 H N N 297 HIS HE1 H N N 298 HIS HE2 H N N 299 HIS HXT H N N 300 ILE N N N N 301 ILE CA C N S 302 ILE C C N N 303 ILE O O N N 304 ILE CB C N S 305 ILE CG1 C N N 306 ILE CG2 C N N 307 ILE CD1 C N N 308 ILE OXT O N N 309 ILE H H N N 310 ILE H2 H N N 311 ILE HA H N N 312 ILE HB H N N 313 ILE HG12 H N N 314 ILE HG13 H N N 315 ILE HG21 H N N 316 ILE HG22 H N N 317 ILE HG23 H N N 318 ILE HD11 H N N 319 ILE HD12 H N N 320 ILE HD13 H N N 321 ILE HXT H N N 322 LEU N N N N 323 LEU CA C N S 324 LEU C C N N 325 LEU O O N N 326 LEU CB C N N 327 LEU CG C N N 328 LEU CD1 C N N 329 LEU CD2 C N N 330 LEU OXT O N N 331 LEU H H N N 332 LEU H2 H N N 333 LEU HA H N N 334 LEU HB2 H N N 335 LEU HB3 H N N 336 LEU HG H N N 337 LEU HD11 H N N 338 LEU HD12 H N N 339 LEU HD13 H N N 340 LEU HD21 H N N 341 LEU HD22 H N N 342 LEU HD23 H N N 343 LEU HXT H N N 344 LYS N N N N 345 LYS CA C N S 346 LYS C C N N 347 LYS O O N N 348 LYS CB C N N 349 LYS CG C N N 350 LYS CD C N N 351 LYS CE C N N 352 LYS NZ N N N 353 LYS OXT O N N 354 LYS H H N N 355 LYS H2 H N N 356 LYS HA H N N 357 LYS HB2 H N N 358 LYS HB3 H N N 359 LYS HG2 H N N 360 LYS HG3 H N N 361 LYS HD2 H N N 362 LYS HD3 H N N 363 LYS HE2 H N N 364 LYS HE3 H N N 365 LYS HZ1 H N N 366 LYS HZ2 H N N 367 LYS HZ3 H N N 368 LYS HXT H N N 369 MET N N N N 370 MET CA C N S 371 MET C C N N 372 MET O O N N 373 MET CB C N N 374 MET CG C N N 375 MET SD S N N 376 MET CE C N N 377 MET OXT O N N 378 MET H H N N 379 MET H2 H N N 380 MET HA H N N 381 MET HB2 H N N 382 MET HB3 H N N 383 MET HG2 H N N 384 MET HG3 H N N 385 MET HE1 H N N 386 MET HE2 H N N 387 MET HE3 H N N 388 MET HXT H N N 389 PHE N N N N 390 PHE CA C N S 391 PHE C C N N 392 PHE O O N N 393 PHE CB C N N 394 PHE CG C Y N 395 PHE CD1 C Y N 396 PHE CD2 C Y N 397 PHE CE1 C Y N 398 PHE CE2 C Y N 399 PHE CZ C Y N 400 PHE OXT O N N 401 PHE H H N N 402 PHE H2 H N N 403 PHE HA H N N 404 PHE HB2 H N N 405 PHE HB3 H N N 406 PHE HD1 H N N 407 PHE HD2 H N N 408 PHE HE1 H N N 409 PHE HE2 H N N 410 PHE HZ H N N 411 PHE HXT H N N 412 PRO N N N N 413 PRO CA C N S 414 PRO C C N N 415 PRO O O N N 416 PRO CB C N N 417 PRO CG C N N 418 PRO CD C N N 419 PRO OXT O N N 420 PRO H H N N 421 PRO HA H N N 422 PRO HB2 H N N 423 PRO HB3 H N N 424 PRO HG2 H N N 425 PRO HG3 H N N 426 PRO HD2 H N N 427 PRO HD3 H N N 428 PRO HXT H N N 429 SER N N N N 430 SER CA C N S 431 SER C C N N 432 SER O O N N 433 SER CB C N N 434 SER OG O N N 435 SER OXT O N N 436 SER H H N N 437 SER H2 H N N 438 SER HA H N N 439 SER HB2 H N N 440 SER HB3 H N N 441 SER HG H N N 442 SER HXT H N N 443 THR N N N N 444 THR CA C N S 445 THR C C N N 446 THR O O N N 447 THR CB C N R 448 THR OG1 O N N 449 THR CG2 C N N 450 THR OXT O N N 451 THR H H N N 452 THR H2 H N N 453 THR HA H N N 454 THR HB H N N 455 THR HG1 H N N 456 THR HG21 H N N 457 THR HG22 H N N 458 THR HG23 H N N 459 THR HXT H N N 460 TRP N N N N 461 TRP CA C N S 462 TRP C C N N 463 TRP O O N N 464 TRP CB C N N 465 TRP CG C Y N 466 TRP CD1 C Y N 467 TRP CD2 C Y N 468 TRP NE1 N Y N 469 TRP CE2 C Y N 470 TRP CE3 C Y N 471 TRP CZ2 C Y N 472 TRP CZ3 C Y N 473 TRP CH2 C Y N 474 TRP OXT O N N 475 TRP H H N N 476 TRP H2 H N N 477 TRP HA H N N 478 TRP HB2 H N N 479 TRP HB3 H N N 480 TRP HD1 H N N 481 TRP HE1 H N N 482 TRP HE3 H N N 483 TRP HZ2 H N N 484 TRP HZ3 H N N 485 TRP HH2 H N N 486 TRP HXT H N N 487 TYR N N N N 488 TYR CA C N S 489 TYR C C N N 490 TYR O O N N 491 TYR CB C N N 492 TYR CG C Y N 493 TYR CD1 C Y N 494 TYR CD2 C Y N 495 TYR CE1 C Y N 496 TYR CE2 C Y N 497 TYR CZ C Y N 498 TYR OH O N N 499 TYR OXT O N N 500 TYR H H N N 501 TYR H2 H N N 502 TYR HA H N N 503 TYR HB2 H N N 504 TYR HB3 H N N 505 TYR HD1 H N N 506 TYR HD2 H N N 507 TYR HE1 H N N 508 TYR HE2 H N N 509 TYR HH H N N 510 TYR HXT H N N 511 VAL N N N N 512 VAL CA C N S 513 VAL C C N N 514 VAL O O N N 515 VAL CB C N N 516 VAL CG1 C N N 517 VAL CG2 C N N 518 VAL OXT O N N 519 VAL H H N N 520 VAL H2 H N N 521 VAL HA H N N 522 VAL HB H N N 523 VAL HG11 H N N 524 VAL HG12 H N N 525 VAL HG13 H N N 526 VAL HG21 H N N 527 VAL HG22 H N N 528 VAL HG23 H N N 529 VAL HXT H N N 530 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 CYS N CA sing N N 70 CYS N H sing N N 71 CYS N H2 sing N N 72 CYS CA C sing N N 73 CYS CA CB sing N N 74 CYS CA HA sing N N 75 CYS C O doub N N 76 CYS C OXT sing N N 77 CYS CB SG sing N N 78 CYS CB HB2 sing N N 79 CYS CB HB3 sing N N 80 CYS SG HG sing N N 81 CYS OXT HXT sing N N 82 DA OP3 P sing N N 83 DA OP3 HOP3 sing N N 84 DA P OP1 doub N N 85 DA P OP2 sing N N 86 DA P "O5'" sing N N 87 DA OP2 HOP2 sing N N 88 DA "O5'" "C5'" sing N N 89 DA "C5'" "C4'" sing N N 90 DA "C5'" "H5'" sing N N 91 DA "C5'" "H5''" sing N N 92 DA "C4'" "O4'" sing N N 93 DA "C4'" "C3'" sing N N 94 DA "C4'" "H4'" sing N N 95 DA "O4'" "C1'" sing N N 96 DA "C3'" "O3'" sing N N 97 DA "C3'" "C2'" sing N N 98 DA "C3'" "H3'" sing N N 99 DA "O3'" "HO3'" sing N N 100 DA "C2'" "C1'" sing N N 101 DA "C2'" "H2'" sing N N 102 DA "C2'" "H2''" sing N N 103 DA "C1'" N9 sing N N 104 DA "C1'" "H1'" sing N N 105 DA N9 C8 sing Y N 106 DA N9 C4 sing Y N 107 DA C8 N7 doub Y N 108 DA C8 H8 sing N N 109 DA N7 C5 sing Y N 110 DA C5 C6 sing Y N 111 DA C5 C4 doub Y N 112 DA C6 N6 sing N N 113 DA C6 N1 doub Y N 114 DA N6 H61 sing N N 115 DA N6 H62 sing N N 116 DA N1 C2 sing Y N 117 DA C2 N3 doub Y N 118 DA C2 H2 sing N N 119 DA N3 C4 sing Y N 120 DC OP3 P sing N N 121 DC OP3 HOP3 sing N N 122 DC P OP1 doub N N 123 DC P OP2 sing N N 124 DC P "O5'" sing N N 125 DC OP2 HOP2 sing N N 126 DC "O5'" "C5'" sing N N 127 DC "C5'" "C4'" sing N N 128 DC "C5'" "H5'" sing N N 129 DC "C5'" "H5''" sing N N 130 DC "C4'" "O4'" sing N N 131 DC "C4'" "C3'" sing N N 132 DC "C4'" "H4'" sing N N 133 DC "O4'" "C1'" sing N N 134 DC "C3'" "O3'" sing N N 135 DC "C3'" "C2'" sing N N 136 DC "C3'" "H3'" sing N N 137 DC "O3'" "HO3'" sing N N 138 DC "C2'" "C1'" sing N N 139 DC "C2'" "H2'" sing N N 140 DC "C2'" "H2''" sing N N 141 DC "C1'" N1 sing N N 142 DC "C1'" "H1'" sing N N 143 DC N1 C2 sing N N 144 DC N1 C6 sing N N 145 DC C2 O2 doub N N 146 DC C2 N3 sing N N 147 DC N3 C4 doub N N 148 DC C4 N4 sing N N 149 DC C4 C5 sing N N 150 DC N4 H41 sing N N 151 DC N4 H42 sing N N 152 DC C5 C6 doub N N 153 DC C5 H5 sing N N 154 DC C6 H6 sing N N 155 DG OP3 P sing N N 156 DG OP3 HOP3 sing N N 157 DG P OP1 doub N N 158 DG P OP2 sing N N 159 DG P "O5'" sing N N 160 DG OP2 HOP2 sing N N 161 DG "O5'" "C5'" sing N N 162 DG "C5'" "C4'" sing N N 163 DG "C5'" "H5'" sing N N 164 DG "C5'" "H5''" sing N N 165 DG "C4'" "O4'" sing N N 166 DG "C4'" "C3'" sing N N 167 DG "C4'" "H4'" sing N N 168 DG "O4'" "C1'" sing N N 169 DG "C3'" "O3'" sing N N 170 DG "C3'" "C2'" sing N N 171 DG "C3'" "H3'" sing N N 172 DG "O3'" "HO3'" sing N N 173 DG "C2'" "C1'" sing N N 174 DG "C2'" "H2'" sing N N 175 DG "C2'" "H2''" sing N N 176 DG "C1'" N9 sing N N 177 DG "C1'" "H1'" sing N N 178 DG N9 C8 sing Y N 179 DG N9 C4 sing Y N 180 DG C8 N7 doub Y N 181 DG C8 H8 sing N N 182 DG N7 C5 sing Y N 183 DG C5 C6 sing N N 184 DG C5 C4 doub Y N 185 DG C6 O6 doub N N 186 DG C6 N1 sing N N 187 DG N1 C2 sing N N 188 DG N1 H1 sing N N 189 DG C2 N2 sing N N 190 DG C2 N3 doub N N 191 DG N2 H21 sing N N 192 DG N2 H22 sing N N 193 DG N3 C4 sing N N 194 DT OP3 P sing N N 195 DT OP3 HOP3 sing N N 196 DT P OP1 doub N N 197 DT P OP2 sing N N 198 DT P "O5'" sing N N 199 DT OP2 HOP2 sing N N 200 DT "O5'" "C5'" sing N N 201 DT "C5'" "C4'" sing N N 202 DT "C5'" "H5'" sing N N 203 DT "C5'" "H5''" sing N N 204 DT "C4'" "O4'" sing N N 205 DT "C4'" "C3'" sing N N 206 DT "C4'" "H4'" sing N N 207 DT "O4'" "C1'" sing N N 208 DT "C3'" "O3'" sing N N 209 DT "C3'" "C2'" sing N N 210 DT "C3'" "H3'" sing N N 211 DT "O3'" "HO3'" sing N N 212 DT "C2'" "C1'" sing N N 213 DT "C2'" "H2'" sing N N 214 DT "C2'" "H2''" sing N N 215 DT "C1'" N1 sing N N 216 DT "C1'" "H1'" sing N N 217 DT N1 C2 sing N N 218 DT N1 C6 sing N N 219 DT C2 O2 doub N N 220 DT C2 N3 sing N N 221 DT N3 C4 sing N N 222 DT N3 H3 sing N N 223 DT C4 O4 doub N N 224 DT C4 C5 sing N N 225 DT C5 C7 sing N N 226 DT C5 C6 doub N N 227 DT C7 H71 sing N N 228 DT C7 H72 sing N N 229 DT C7 H73 sing N N 230 DT C6 H6 sing N N 231 GLN N CA sing N N 232 GLN N H sing N N 233 GLN N H2 sing N N 234 GLN CA C sing N N 235 GLN CA CB sing N N 236 GLN CA HA sing N N 237 GLN C O doub N N 238 GLN C OXT sing N N 239 GLN CB CG sing N N 240 GLN CB HB2 sing N N 241 GLN CB HB3 sing N N 242 GLN CG CD sing N N 243 GLN CG HG2 sing N N 244 GLN CG HG3 sing N N 245 GLN CD OE1 doub N N 246 GLN CD NE2 sing N N 247 GLN NE2 HE21 sing N N 248 GLN NE2 HE22 sing N N 249 GLN OXT HXT sing N N 250 GLU N CA sing N N 251 GLU N H sing N N 252 GLU N H2 sing N N 253 GLU CA C sing N N 254 GLU CA CB sing N N 255 GLU CA HA sing N N 256 GLU C O doub N N 257 GLU C OXT sing N N 258 GLU CB CG sing N N 259 GLU CB HB2 sing N N 260 GLU CB HB3 sing N N 261 GLU CG CD sing N N 262 GLU CG HG2 sing N N 263 GLU CG HG3 sing N N 264 GLU CD OE1 doub N N 265 GLU CD OE2 sing N N 266 GLU OE2 HE2 sing N N 267 GLU OXT HXT sing N N 268 GLY N CA sing N N 269 GLY N H sing N N 270 GLY N H2 sing N N 271 GLY CA C sing N N 272 GLY CA HA2 sing N N 273 GLY CA HA3 sing N N 274 GLY C O doub N N 275 GLY C OXT sing N N 276 GLY OXT HXT sing N N 277 HIS N CA sing N N 278 HIS N H sing N N 279 HIS N H2 sing N N 280 HIS CA C sing N N 281 HIS CA CB sing N N 282 HIS CA HA sing N N 283 HIS C O doub N N 284 HIS C OXT sing N N 285 HIS CB CG sing N N 286 HIS CB HB2 sing N N 287 HIS CB HB3 sing N N 288 HIS CG ND1 sing Y N 289 HIS CG CD2 doub Y N 290 HIS ND1 CE1 doub Y N 291 HIS ND1 HD1 sing N N 292 HIS CD2 NE2 sing Y N 293 HIS CD2 HD2 sing N N 294 HIS CE1 NE2 sing Y N 295 HIS CE1 HE1 sing N N 296 HIS NE2 HE2 sing N N 297 HIS OXT HXT sing N N 298 ILE N CA sing N N 299 ILE N H sing N N 300 ILE N H2 sing N N 301 ILE CA C sing N N 302 ILE CA CB sing N N 303 ILE CA HA sing N N 304 ILE C O doub N N 305 ILE C OXT sing N N 306 ILE CB CG1 sing N N 307 ILE CB CG2 sing N N 308 ILE CB HB sing N N 309 ILE CG1 CD1 sing N N 310 ILE CG1 HG12 sing N N 311 ILE CG1 HG13 sing N N 312 ILE CG2 HG21 sing N N 313 ILE CG2 HG22 sing N N 314 ILE CG2 HG23 sing N N 315 ILE CD1 HD11 sing N N 316 ILE CD1 HD12 sing N N 317 ILE CD1 HD13 sing N N 318 ILE OXT HXT sing N N 319 LEU N CA sing N N 320 LEU N H sing N N 321 LEU N H2 sing N N 322 LEU CA C sing N N 323 LEU CA CB sing N N 324 LEU CA HA sing N N 325 LEU C O doub N N 326 LEU C OXT sing N N 327 LEU CB CG sing N N 328 LEU CB HB2 sing N N 329 LEU CB HB3 sing N N 330 LEU CG CD1 sing N N 331 LEU CG CD2 sing N N 332 LEU CG HG sing N N 333 LEU CD1 HD11 sing N N 334 LEU CD1 HD12 sing N N 335 LEU CD1 HD13 sing N N 336 LEU CD2 HD21 sing N N 337 LEU CD2 HD22 sing N N 338 LEU CD2 HD23 sing N N 339 LEU OXT HXT sing N N 340 LYS N CA sing N N 341 LYS N H sing N N 342 LYS N H2 sing N N 343 LYS CA C sing N N 344 LYS CA CB sing N N 345 LYS CA HA sing N N 346 LYS C O doub N N 347 LYS C OXT sing N N 348 LYS CB CG sing N N 349 LYS CB HB2 sing N N 350 LYS CB HB3 sing N N 351 LYS CG CD sing N N 352 LYS CG HG2 sing N N 353 LYS CG HG3 sing N N 354 LYS CD CE sing N N 355 LYS CD HD2 sing N N 356 LYS CD HD3 sing N N 357 LYS CE NZ sing N N 358 LYS CE HE2 sing N N 359 LYS CE HE3 sing N N 360 LYS NZ HZ1 sing N N 361 LYS NZ HZ2 sing N N 362 LYS NZ HZ3 sing N N 363 LYS OXT HXT sing N N 364 MET N CA sing N N 365 MET N H sing N N 366 MET N H2 sing N N 367 MET CA C sing N N 368 MET CA CB sing N N 369 MET CA HA sing N N 370 MET C O doub N N 371 MET C OXT sing N N 372 MET CB CG sing N N 373 MET CB HB2 sing N N 374 MET CB HB3 sing N N 375 MET CG SD sing N N 376 MET CG HG2 sing N N 377 MET CG HG3 sing N N 378 MET SD CE sing N N 379 MET CE HE1 sing N N 380 MET CE HE2 sing N N 381 MET CE HE3 sing N N 382 MET OXT HXT sing N N 383 PHE N CA sing N N 384 PHE N H sing N N 385 PHE N H2 sing N N 386 PHE CA C sing N N 387 PHE CA CB sing N N 388 PHE CA HA sing N N 389 PHE C O doub N N 390 PHE C OXT sing N N 391 PHE CB CG sing N N 392 PHE CB HB2 sing N N 393 PHE CB HB3 sing N N 394 PHE CG CD1 doub Y N 395 PHE CG CD2 sing Y N 396 PHE CD1 CE1 sing Y N 397 PHE CD1 HD1 sing N N 398 PHE CD2 CE2 doub Y N 399 PHE CD2 HD2 sing N N 400 PHE CE1 CZ doub Y N 401 PHE CE1 HE1 sing N N 402 PHE CE2 CZ sing Y N 403 PHE CE2 HE2 sing N N 404 PHE CZ HZ sing N N 405 PHE OXT HXT sing N N 406 PRO N CA sing N N 407 PRO N CD sing N N 408 PRO N H sing N N 409 PRO CA C sing N N 410 PRO CA CB sing N N 411 PRO CA HA sing N N 412 PRO C O doub N N 413 PRO C OXT sing N N 414 PRO CB CG sing N N 415 PRO CB HB2 sing N N 416 PRO CB HB3 sing N N 417 PRO CG CD sing N N 418 PRO CG HG2 sing N N 419 PRO CG HG3 sing N N 420 PRO CD HD2 sing N N 421 PRO CD HD3 sing N N 422 PRO OXT HXT sing N N 423 SER N CA sing N N 424 SER N H sing N N 425 SER N H2 sing N N 426 SER CA C sing N N 427 SER CA CB sing N N 428 SER CA HA sing N N 429 SER C O doub N N 430 SER C OXT sing N N 431 SER CB OG sing N N 432 SER CB HB2 sing N N 433 SER CB HB3 sing N N 434 SER OG HG sing N N 435 SER OXT HXT sing N N 436 THR N CA sing N N 437 THR N H sing N N 438 THR N H2 sing N N 439 THR CA C sing N N 440 THR CA CB sing N N 441 THR CA HA sing N N 442 THR C O doub N N 443 THR C OXT sing N N 444 THR CB OG1 sing N N 445 THR CB CG2 sing N N 446 THR CB HB sing N N 447 THR OG1 HG1 sing N N 448 THR CG2 HG21 sing N N 449 THR CG2 HG22 sing N N 450 THR CG2 HG23 sing N N 451 THR OXT HXT sing N N 452 TRP N CA sing N N 453 TRP N H sing N N 454 TRP N H2 sing N N 455 TRP CA C sing N N 456 TRP CA CB sing N N 457 TRP CA HA sing N N 458 TRP C O doub N N 459 TRP C OXT sing N N 460 TRP CB CG sing N N 461 TRP CB HB2 sing N N 462 TRP CB HB3 sing N N 463 TRP CG CD1 doub Y N 464 TRP CG CD2 sing Y N 465 TRP CD1 NE1 sing Y N 466 TRP CD1 HD1 sing N N 467 TRP CD2 CE2 doub Y N 468 TRP CD2 CE3 sing Y N 469 TRP NE1 CE2 sing Y N 470 TRP NE1 HE1 sing N N 471 TRP CE2 CZ2 sing Y N 472 TRP CE3 CZ3 doub Y N 473 TRP CE3 HE3 sing N N 474 TRP CZ2 CH2 doub Y N 475 TRP CZ2 HZ2 sing N N 476 TRP CZ3 CH2 sing Y N 477 TRP CZ3 HZ3 sing N N 478 TRP CH2 HH2 sing N N 479 TRP OXT HXT sing N N 480 TYR N CA sing N N 481 TYR N H sing N N 482 TYR N H2 sing N N 483 TYR CA C sing N N 484 TYR CA CB sing N N 485 TYR CA HA sing N N 486 TYR C O doub N N 487 TYR C OXT sing N N 488 TYR CB CG sing N N 489 TYR CB HB2 sing N N 490 TYR CB HB3 sing N N 491 TYR CG CD1 doub Y N 492 TYR CG CD2 sing Y N 493 TYR CD1 CE1 sing Y N 494 TYR CD1 HD1 sing N N 495 TYR CD2 CE2 doub Y N 496 TYR CD2 HD2 sing N N 497 TYR CE1 CZ doub Y N 498 TYR CE1 HE1 sing N N 499 TYR CE2 CZ sing Y N 500 TYR CE2 HE2 sing N N 501 TYR CZ OH sing N N 502 TYR OH HH sing N N 503 TYR OXT HXT sing N N 504 VAL N CA sing N N 505 VAL N H sing N N 506 VAL N H2 sing N N 507 VAL CA C sing N N 508 VAL CA CB sing N N 509 VAL CA HA sing N N 510 VAL C O doub N N 511 VAL C OXT sing N N 512 VAL CB CG1 sing N N 513 VAL CB CG2 sing N N 514 VAL CB HB sing N N 515 VAL CG1 HG11 sing N N 516 VAL CG1 HG12 sing N N 517 VAL CG1 HG13 sing N N 518 VAL CG2 HG21 sing N N 519 VAL CG2 HG22 sing N N 520 VAL CG2 HG23 sing N N 521 VAL OXT HXT sing N N 522 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1O4X 'double helix' 1O4X 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DT 1 1_555 B DA 19 1_555 -0.074 -0.107 -0.363 6.618 -4.191 -1.158 1 C_DT301:DA338_D C 301 ? D 338 ? 20 1 1 A DG 2 1_555 B DC 18 1_555 -0.208 -0.280 -0.517 -0.984 -17.393 3.959 2 C_DG302:DC337_D C 302 ? D 337 ? 19 1 1 A DT 3 1_555 B DA 17 1_555 0.056 -0.244 -0.534 -5.307 -18.318 4.628 3 C_DT303:DA336_D C 303 ? D 336 ? 20 1 1 A DC 4 1_555 B DG 16 1_555 0.103 -0.162 0.272 -14.263 19.976 -0.113 4 C_DC304:DG335_D C 304 ? D 335 ? 19 1 1 A DT 5 1_555 B DA 15 1_555 0.084 -0.152 0.401 -9.596 19.614 3.505 5 C_DT305:DA334_D C 305 ? D 334 ? 20 1 1 A DT 6 1_555 B DA 14 1_555 0.015 -0.128 0.194 2.374 11.419 -0.212 6 C_DT306:DA333_D C 306 ? D 333 ? 20 1 1 A DT 7 1_555 B DA 13 1_555 -0.135 -0.138 -0.306 3.353 -0.921 1.358 7 C_DT307:DA332_D C 307 ? D 332 ? 20 1 1 A DG 8 1_555 B DC 12 1_555 -0.067 -0.170 -0.153 2.663 4.508 -2.433 8 C_DG308:DC331_D C 308 ? D 331 ? 19 1 1 A DT 9 1_555 B DA 11 1_555 -0.042 -0.118 -0.232 1.940 -3.608 -2.200 9 C_DT309:DA330_D C 309 ? D 330 ? 20 1 1 A DC 10 1_555 B DG 10 1_555 0.125 -0.196 -0.276 1.917 -7.691 -0.622 10 C_DC310:DG329_D C 310 ? D 329 ? 19 1 1 A DA 11 1_555 B DT 9 1_555 0.084 -0.107 -0.202 -0.872 -6.512 -0.111 11 C_DA311:DT328_D C 311 ? D 328 ? 20 1 1 A DT 12 1_555 B DA 8 1_555 -0.014 -0.125 -0.235 1.622 -8.055 -1.535 12 C_DT312:DA327_D C 312 ? D 327 ? 20 1 1 A DG 13 1_555 B DC 7 1_555 -0.084 -0.189 -0.049 -0.116 -5.890 -1.660 13 C_DG313:DC326_D C 313 ? D 326 ? 19 1 1 A DC 14 1_555 B DG 6 1_555 0.093 -0.188 -0.323 2.587 -4.647 -0.371 14 C_DC314:DG325_D C 314 ? D 325 ? 19 1 1 A DT 15 1_555 B DA 5 1_555 0.008 -0.137 -0.225 -0.592 -7.120 -0.833 15 C_DT315:DA324_D C 315 ? D 324 ? 20 1 1 A DA 16 1_555 B DT 4 1_555 0.060 -0.122 -0.289 -3.708 -3.013 -0.337 16 C_DA316:DT323_D C 316 ? D 323 ? 20 1 1 A DA 17 1_555 B DT 3 1_555 0.038 -0.123 -0.376 -0.852 2.928 1.782 17 C_DA317:DT322_D C 317 ? D 322 ? 20 1 1 A DT 18 1_555 B DA 2 1_555 -0.064 -0.134 -0.353 5.519 -1.954 0.488 18 C_DT318:DA321_D C 318 ? D 321 ? 20 1 1 A DG 19 1_555 B DC 1 1_555 -0.237 -0.212 -0.264 8.106 -3.427 2.218 19 C_DG319:DC320_D C 319 ? D 320 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DT 1 1_555 B DA 19 1_555 A DG 2 1_555 B DC 18 1_555 0.433 0.408 3.624 1.507 8.999 35.434 -0.749 -0.456 3.631 14.490 -2.427 36.554 1 CC_DT301DG302:DC337DA338_DD C 301 ? D 338 ? C 302 ? D 337 ? 1 A DG 2 1_555 B DC 18 1_555 A DT 3 1_555 B DA 17 1_555 0.068 -0.209 3.261 -0.385 6.218 37.031 -1.130 -0.155 3.184 9.706 0.601 37.533 2 CC_DG302DT303:DA336DC337_DD C 302 ? D 337 ? C 303 ? D 336 ? 1 A DT 3 1_555 B DA 17 1_555 A DC 4 1_555 B DG 16 1_555 0.685 0.481 3.700 -7.403 18.003 33.038 -1.887 -2.126 3.306 28.763 11.828 38.208 3 CC_DT303DC304:DG335DA336_DD C 303 ? D 336 ? C 304 ? D 335 ? 1 A DC 4 1_555 B DG 16 1_555 A DT 5 1_555 B DA 15 1_555 0.069 -0.738 3.857 -3.168 8.269 26.422 -3.803 -1.012 3.441 17.478 6.695 27.842 4 CC_DC304DT305:DA334DG335_DD C 304 ? D 335 ? C 305 ? D 334 ? 1 A DT 5 1_555 B DA 15 1_555 A DT 6 1_555 B DA 14 1_555 -0.182 0.097 3.543 4.709 11.835 25.455 -2.763 1.549 3.190 24.964 -9.934 28.417 5 CC_DT305DT306:DA333DA334_DD C 305 ? D 334 ? C 306 ? D 333 ? 1 A DT 6 1_555 B DA 14 1_555 A DT 7 1_555 B DA 13 1_555 -0.228 0.770 4.174 2.026 32.292 22.474 -4.376 0.686 3.038 56.000 -3.514 39.223 6 CC_DT306DT307:DA332DA333_DD C 306 ? D 333 ? C 307 ? D 332 ? 1 A DT 7 1_555 B DA 13 1_555 A DG 8 1_555 B DC 12 1_555 0.006 0.267 3.705 -0.683 4.678 35.534 -0.331 -0.121 3.708 7.623 1.113 35.837 7 CC_DT307DG308:DC331DA332_DD C 307 ? D 332 ? C 308 ? D 331 ? 1 A DG 8 1_555 B DC 12 1_555 A DT 9 1_555 B DA 11 1_555 -0.122 -0.444 3.588 0.976 8.528 31.571 -2.382 0.399 3.352 15.323 -1.754 32.688 8 CC_DG308DT309:DA330DC331_DD C 308 ? D 331 ? C 309 ? D 330 ? 1 A DT 9 1_555 B DA 11 1_555 A DC 10 1_555 B DG 10 1_555 -0.044 -0.075 3.465 0.902 5.124 35.123 -0.916 0.211 3.418 8.433 -1.484 35.494 9 CC_DT309DC310:DG329DA330_DD C 309 ? D 330 ? C 310 ? D 329 ? 1 A DC 10 1_555 B DG 10 1_555 A DA 11 1_555 B DT 9 1_555 0.086 0.205 3.665 -0.644 3.755 36.279 -0.257 -0.237 3.666 6.010 1.031 36.471 10 CC_DC310DA311:DT328DG329_DD C 310 ? D 329 ? C 311 ? D 328 ? 1 A DA 11 1_555 B DT 9 1_555 A DT 12 1_555 B DA 8 1_555 -0.199 -0.377 3.234 0.576 2.143 34.225 -0.971 0.427 3.202 3.636 -0.978 34.295 11 CC_DA311DT312:DA327DT328_DD C 311 ? D 328 ? C 312 ? D 327 ? 1 A DT 12 1_555 B DA 8 1_555 A DG 13 1_555 B DC 7 1_555 -0.294 0.559 3.657 -0.724 5.295 37.080 0.085 0.350 3.704 8.273 1.131 37.450 12 CC_DT312DG313:DC326DA327_DD C 312 ? D 327 ? C 313 ? D 326 ? 1 A DG 13 1_555 B DC 7 1_555 A DC 14 1_555 B DG 6 1_555 0.637 0.527 3.361 2.089 1.642 37.864 0.593 -0.703 3.409 2.527 -3.214 37.954 13 CC_DG313DC314:DG325DC326_DD C 313 ? D 326 ? C 314 ? D 325 ? 1 A DC 14 1_555 B DG 6 1_555 A DT 15 1_555 B DA 5 1_555 0.013 -0.300 3.627 0.186 2.975 33.253 -1.067 0.011 3.588 5.186 -0.324 33.383 14 CC_DC314DT315:DA324DG325_DD C 314 ? D 325 ? C 315 ? D 324 ? 1 A DT 15 1_555 B DA 5 1_555 A DA 16 1_555 B DT 4 1_555 0.126 -0.079 3.758 0.272 2.509 35.712 -0.543 -0.160 3.745 4.084 -0.443 35.798 15 CC_DT315DA316:DT323DA324_DD C 315 ? D 324 ? C 316 ? D 323 ? 1 A DA 16 1_555 B DT 4 1_555 A DA 17 1_555 B DT 3 1_555 0.507 -0.374 3.464 -0.946 0.240 34.285 -0.675 -1.016 3.447 0.407 1.605 34.298 16 CC_DA316DA317:DT322DT323_DD C 316 ? D 323 ? C 317 ? D 322 ? 1 A DA 17 1_555 B DT 3 1_555 A DT 18 1_555 B DA 2 1_555 -0.519 -0.603 3.270 0.264 0.910 31.794 -1.266 0.994 3.248 1.662 -0.482 31.807 17 CC_DA317DT318:DA321DT322_DD C 317 ? D 322 ? C 318 ? D 321 ? 1 A DT 18 1_555 B DA 2 1_555 A DG 19 1_555 B DC 1 1_555 -0.022 -0.139 3.369 0.238 7.434 32.975 -1.474 0.077 3.261 12.894 -0.412 33.781 18 CC_DT318DG319:DC320DA321_DD C 318 ? D 321 ? C 319 ? D 320 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 DMX500 Bruker 500 ? 2 DMX600 Bruker 600 ? 3 DRX600 Bruker 750 ? 4 DRX750 Bruker 800 ? 5 DRX800 Bruker 800 ? # _atom_sites.entry_id 1O4X _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P S # loop_