HEADER HYDROLASE 22-AUG-03 1O59 TITLE CRYSTAL STRUCTURE OF ALLANTOICASE (YIR029W) FROM SACCHAROMYCES TITLE 2 CEREVISIAE AT 2.40 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALLANTOICASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ALLANTOATE AMIDINOHYDROLASE; COMPND 5 EC: 3.5.3.4; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: YIR029W; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS YIR029W, ALLANTOICASE, STRUCTURAL GENOMICS, JCSG, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 8 25-JAN-23 1O59 1 SEQADV LINK REVDAT 7 20-DEC-17 1O59 1 REMARK REVDAT 6 13-JUL-11 1O59 1 VERSN REVDAT 5 24-FEB-09 1O59 1 VERSN REVDAT 4 20-SEP-05 1O59 1 JRNL REVDAT 3 18-JAN-05 1O59 1 AUTHOR KEYWDS REMARK REVDAT 2 03-AUG-04 1O59 1 JRNL REVDAT 1 02-SEP-03 1O59 0 JRNL AUTH Q.XU,R.SCHWARZENBACHER,R.PAGE,E.SIMS,P.ABDUBEK,E.AMBING, JRNL AUTH 2 T.BIORAC,L.S.BRINEN,J.CAMBELL,J.M.CANAVES,H.J.CHIU,X.DAI, JRNL AUTH 3 A.M.DEACON,M.DIDONATO,M.A.ELSLIGER,R.FLOYD,A.GODZIK, JRNL AUTH 4 C.GRITTINI,S.K.GRZECHNIK,E.HAMPTON,L.JAROSZEWSKI,C.KARLAK, JRNL AUTH 5 H.E.KLOCK,E.KOESEMA,J.S.KOVARIK,A.KREUSCH,P.KUHN,S.A.LESLEY, JRNL AUTH 6 I.LEVIN,D.MCMULLAN,T.M.MCPHILLIPS,M.D.MILLER,A.MORSE,K.MOY, JRNL AUTH 7 J.OUYANG,K.QUIJANO,R.REYES,F.REZEZADEH,A.ROBB,G.SPRAGGON, JRNL AUTH 8 R.C.STEVENS,H.VAN DEN BEDEM,J.VELASQUEZ,J.VINCENT, JRNL AUTH 9 F.VON DELFT,X.WANG,B.WEST,G.WOLF,K.O.HODGSON,J.WOOLEY, JRNL AUTH10 I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF AN ALLANTOICASE (YIR029W) FROM JRNL TITL 2 SACCHAROMYCES CEREVISIAE AT 2.4 A RESOLUTION JRNL REF PROTEINS V. 56 619 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15229895 JRNL DOI 10.1002/PROT.20164 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 17676 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.500 REMARK 3 FREE R VALUE TEST SET COUNT : 830 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1323 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2450 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2548 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 218 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 56.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.40000 REMARK 3 B22 (A**2) : -2.40000 REMARK 3 B33 (A**2) : 3.61000 REMARK 3 B12 (A**2) : -1.20000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.279 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.215 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.165 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.449 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2633 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2362 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3554 ; 1.505 ; 1.913 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5478 ; 0.832 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 312 ; 7.304 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 131 ;36.267 ;23.206 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 446 ;17.738 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.963 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 372 ; 0.093 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2920 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 579 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 479 ; 0.185 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2422 ; 0.199 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1648 ; 0.091 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1 ; 0.022 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.148 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 46 ; 0.302 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.164 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1672 ; 0.832 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2531 ; 1.285 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1201 ; 1.706 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1023 ; 2.603 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 31.8230 53.2820 49.0190 REMARK 3 T TENSOR REMARK 3 T11: -0.2430 T22: -0.2104 REMARK 3 T33: -0.2905 T12: 0.0106 REMARK 3 T13: 0.0270 T23: -0.0930 REMARK 3 L TENSOR REMARK 3 L11: 3.3975 L22: 2.0648 REMARK 3 L33: 1.9452 L12: 1.3062 REMARK 3 L13: -0.5912 L23: -0.6154 REMARK 3 S TENSOR REMARK 3 S11: 0.0171 S12: -0.3583 S13: 0.4264 REMARK 3 S21: 0.3071 S22: -0.1626 S23: 0.3068 REMARK 3 S31: -0.1779 S32: -0.0122 S33: 0.1455 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 343 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8810 29.3240 46.2170 REMARK 3 T TENSOR REMARK 3 T11: -0.3778 T22: -0.2744 REMARK 3 T33: -0.3478 T12: 0.0183 REMARK 3 T13: 0.0501 T23: -0.0211 REMARK 3 L TENSOR REMARK 3 L11: 3.0547 L22: 4.7750 REMARK 3 L33: 3.0036 L12: -0.3312 REMARK 3 L13: -0.9740 L23: -0.7944 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.1506 S13: 0.0814 REMARK 3 S21: 0.1398 S22: 0.1777 S23: 0.7001 REMARK 3 S31: 0.0730 S32: -0.0168 S33: -0.1352 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. SELENIUM OCCUPANCIES WERE SET TO REMARK 3 0.5, TO REFLECT VARIABLE INCORPORATION DURING EXPRESSION. THIS REMARK 3 VALUE MINIMIZES RFREE AND THE AMOUNT OF DIFFERENCE DENSITY OVER REMARK 3 THE SITES. 2. RESIDUES 188-193 WERE OMITTED, BECAUSE THE STRONG REMARK 3 DIFFERENCE DENSITY REMAINED AMBIGUOUS ABOUT THE PATH OF MAIN REMARK 3 CHAIN TRACE; THE DENSITY WAS MODELED WITH WATER. 3. THE N- REMARK 3 TERMINUS RETAINS STRONG DIFFERENCE DENSITY, SUGGESTING A DOUBLE REMARK 3 CONFORMATION FOR MSE1; THIS PROVED DIFFICULT TO MODEL, SO THE REMARK 3 CONFORMATION AGREEING BEST WITH EXPERIMENTAL DENSITY WAS REMARK 3 RETAINED. 4. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 4 REMARK 4 1O59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1000001819. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-APR-03; 17-APR-03 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : SSRL; SSRL REMARK 200 BEAMLINE : BL11-1; BL9-2 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976224; 0.979608, 0.918370, REMARK 200 0.979413 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR; DOUBLE CRYSTAL REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315; ADSC QUANTUM REMARK 200 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18532 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 54.554 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.100 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.70700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% ETHYLENE GLYCOL , VAPOR REMARK 280 DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K. 30% ETHYLENE REMARK 280 GLYCOL, VAPOR DIFFUSION,SITTING DROP,NANODROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 67.45900 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 67.45900 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.45900 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 67.45900 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 67.45900 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 67.45900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 577 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 PRO A 58 REMARK 465 THR A 59 REMARK 465 ARG A 60 REMARK 465 PHE A 61 REMARK 465 VAL A 62 REMARK 465 HIS A 63 REMARK 465 SER A 64 REMARK 465 GLY A 65 REMARK 465 ALA A 66 REMARK 465 GLU A 188 REMARK 465 LEU A 189 REMARK 465 LYS A 190 REMARK 465 THR A 191 REMARK 465 LYS A 192 REMARK 465 ASP A 193 REMARK 465 GLU A 285 REMARK 465 SER A 286 REMARK 465 GLU A 287 REMARK 465 SER A 288 REMARK 465 SER A 289 REMARK 465 GLU A 290 REMARK 465 ASN A 291 REMARK 465 THR A 292 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 GLY A 295 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 2 CE NZ REMARK 470 LYS A 318 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 502 O HOH A 736 1.85 REMARK 500 N HIS A 194 O HOH A 721 1.96 REMARK 500 O HOH A 507 O HOH A 734 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 212 CB - CG - OD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 17 -60.11 -95.84 REMARK 500 GLU A 40 19.42 -159.81 REMARK 500 ALA A 43 141.88 -170.76 REMARK 500 PHE A 104 -2.02 71.34 REMARK 500 ASN A 106 67.56 -103.74 REMARK 500 GLU A 121 -74.55 -94.18 REMARK 500 GLU A 123 74.33 -66.57 REMARK 500 THR A 158 133.52 -37.01 REMARK 500 ALA A 267 129.23 -38.72 REMARK 500 HIS A 268 -13.55 70.33 REMARK 500 ASN A 272 23.56 -149.77 REMARK 500 ASP A 332 -176.08 -173.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 355059 RELATED DB: TARGETDB DBREF 1O59 A 1 343 UNP P25335 ALC_YEAST 1 343 SEQADV 1O59 GLY A -10 UNP P25335 EXPRESSION TAG SEQADV 1O59 SER A -9 UNP P25335 EXPRESSION TAG SEQADV 1O59 ASP A -8 UNP P25335 EXPRESSION TAG SEQADV 1O59 LYS A -7 UNP P25335 EXPRESSION TAG SEQADV 1O59 ILE A -6 UNP P25335 EXPRESSION TAG SEQADV 1O59 HIS A -5 UNP P25335 EXPRESSION TAG SEQADV 1O59 HIS A -4 UNP P25335 EXPRESSION TAG SEQADV 1O59 HIS A -3 UNP P25335 EXPRESSION TAG SEQADV 1O59 HIS A -2 UNP P25335 EXPRESSION TAG SEQADV 1O59 HIS A -1 UNP P25335 EXPRESSION TAG SEQADV 1O59 HIS A 0 UNP P25335 EXPRESSION TAG SEQADV 1O59 MSE A 1 UNP P25335 MET 1 MODIFIED RESIDUE SEQADV 1O59 MSE A 79 UNP P25335 MET 79 MODIFIED RESIDUE SEQADV 1O59 MSE A 88 UNP P25335 MET 88 MODIFIED RESIDUE SEQADV 1O59 MSE A 169 UNP P25335 MET 169 MODIFIED RESIDUE SEQADV 1O59 MSE A 230 UNP P25335 MET 230 MODIFIED RESIDUE SEQRES 1 A 355 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MSE SEQRES 2 A 355 LYS PHE PHE SER LEU ALA ASP GLU ALA GLU PHE LYS SER SEQRES 3 A 355 ILE ILE ILE SER LYS ASN LYS ALA VAL ASP VAL ILE GLY SEQRES 4 A 355 SER LYS LEU GLY GLY GLN VAL VAL SER PHE SER ASP GLU SEQRES 5 A 355 TRP PHE ALA SER ALA GLU ASN LEU ILE GLN PRO THR ALA SEQRES 6 A 355 PRO ILE ARG ASP PRO THR ARG PHE VAL HIS SER GLY ALA SEQRES 7 A 355 TRP TYR ASP GLY TRP GLU THR ARG ARG HIS ASN GLU MSE SEQRES 8 A 355 GLU TYR ASP TRP VAL ILE ILE LYS MSE GLY VAL ALA ALA SEQRES 9 A 355 ALA HIS ILE ILE GLY GLY GLU ILE ASP THR ALA PHE PHE SEQRES 10 A 355 ASN GLY ASN HIS ALA PRO PHE VAL SER ILE GLU ALA LEU SEQRES 11 A 355 TYR ASP GLU GLY GLU GLU GLY ASN ILE VAL GLU ASP ASP SEQRES 12 A 355 SER ARG TRP VAL GLU ILE VAL GLU LYS PHE GLU CYS GLY SEQRES 13 A 355 PRO SER GLN ARG HIS LEU PHE VAL ARG GLY ASN GLY LEU SEQRES 14 A 355 THR LYS GLU ARG PHE THR HIS ILE LYS LEU LYS MSE TYR SEQRES 15 A 355 PRO ASP GLY GLY ILE ALA ARG PHE ARG LEU TYR GLY ARG SEQRES 16 A 355 VAL VAL PRO PRO GLU LEU LYS THR LYS ASP HIS ILE ILE SEQRES 17 A 355 ASP LEU ALA TYR VAL CYS ASN GLY ALA VAL ALA LEU LYS SEQRES 18 A 355 TYR SER ASP GLN HIS PHE GLY SER VAL ASP ASN LEU LEU SEQRES 19 A 355 LEU PRO GLY ARG GLY HIS ASP MSE SER ASP GLY TRP GLU SEQRES 20 A 355 THR LYS ARG SER ARG GLN PRO GLY HIS THR ASP TRP ALA SEQRES 21 A 355 VAL ILE GLN LEU GLY ARG GLU SER SER PHE ILE GLU LYS SEQRES 22 A 355 ILE ILE VAL ASP THR ALA HIS PHE ARG GLY ASN PHE PRO SEQRES 23 A 355 GLN PHE ILE THR VAL GLU GLY CYS LEU LYS GLU SER GLU SEQRES 24 A 355 SER SER GLU ASN THR GLY GLU GLY THR TRP VAL GLU LEU SEQRES 25 A 355 VAL GLY LYS SER LYS THR GLY PRO ASP LYS GLU HIS VAL SEQRES 26 A 355 TYR GLU ILE ARG LYS SER ILE ARG VAL SER HIS VAL LYS SEQRES 27 A 355 LEU THR ILE ILE PRO ASP GLY GLY VAL LYS ARG ILE ARG SEQRES 28 A 355 VAL TRP GLY TYR MODRES 1O59 MSE A 1 MET SELENOMETHIONINE MODRES 1O59 MSE A 79 MET SELENOMETHIONINE MODRES 1O59 MSE A 88 MET SELENOMETHIONINE MODRES 1O59 MSE A 169 MET SELENOMETHIONINE MODRES 1O59 MSE A 230 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 79 8 HET MSE A 88 8 HET MSE A 169 8 HET MSE A 230 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 5(C5 H11 N O2 SE) FORMUL 2 HOH *218(H2 O) HELIX 1 1 SER A 5 ALA A 7 5 3 HELIX 2 2 ASP A 8 ILE A 17 1 10 HELIX 3 3 GLY A 27 GLY A 31 5 5 HELIX 4 4 SER A 44 GLN A 50 5 7 HELIX 5 5 TYR A 200 GLY A 204 5 5 HELIX 6 6 VAL A 218 LEU A 223 5 6 HELIX 7 7 ASP A 229 ASP A 232 5 4 SHEET 1 A 5 LYS A 2 PHE A 4 0 SHEET 2 A 5 ARG A 148 VAL A 152 -1 O LEU A 150 N PHE A 4 SHEET 3 A 5 ALA A 93 ASP A 101 -1 N GLY A 98 O PHE A 151 SHEET 4 A 5 ARG A 177 VAL A 184 -1 O ARG A 177 N ASP A 101 SHEET 5 A 5 VAL A 23 ASP A 24 -1 N VAL A 23 O GLY A 182 SHEET 1 B 5 GLN A 33 PHE A 37 0 SHEET 2 B 5 ASP A 82 LYS A 87 -1 O LYS A 87 N GLN A 33 SHEET 3 B 5 HIS A 164 TYR A 170 -1 O ILE A 165 N ILE A 86 SHEET 4 B 5 PHE A 112 LEU A 118 -1 N GLU A 116 O LYS A 166 SHEET 5 B 5 VAL A 135 GLU A 142 -1 O ILE A 137 N ILE A 115 SHEET 1 C 2 TRP A 71 GLU A 72 0 SHEET 2 C 2 GLY A 174 ILE A 175 -1 O ILE A 175 N TRP A 71 SHEET 1 D 4 ILE A 196 ASP A 197 0 SHEET 2 D 4 ARG A 337 TYR A 343 -1 O GLY A 342 N ILE A 196 SHEET 3 D 4 PHE A 258 ASP A 265 -1 N ILE A 263 O ARG A 339 SHEET 4 D 4 GLU A 311 SER A 319 -1 O TYR A 314 N ILE A 262 SHEET 1 E 5 VAL A 206 TYR A 210 0 SHEET 2 E 5 ASP A 246 GLN A 251 -1 O VAL A 249 N LYS A 209 SHEET 3 E 5 HIS A 324 ILE A 330 -1 O VAL A 325 N ILE A 250 SHEET 4 E 5 PHE A 276 CYS A 282 -1 N GLU A 280 O LYS A 326 SHEET 5 E 5 TRP A 297 LYS A 305 -1 O VAL A 301 N VAL A 279 SHEET 1 F 3 PHE A 215 GLY A 216 0 SHEET 2 F 3 TRP A 234 GLU A 235 -1 O GLU A 235 N PHE A 215 SHEET 3 F 3 GLY A 334 VAL A 335 -1 O VAL A 335 N TRP A 234 LINK C HIS A 0 N MSE A 1 1555 1555 1.34 LINK C MSE A 1 N LYS A 2 1555 1555 1.33 LINK C GLU A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N GLU A 80 1555 1555 1.33 LINK C LYS A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N GLY A 89 1555 1555 1.33 LINK C LYS A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N TYR A 170 1555 1555 1.33 LINK C ASP A 229 N MSE A 230 1555 1555 1.34 LINK C MSE A 230 N SER A 231 1555 1555 1.32 CISPEP 1 TYR A 170 PRO A 171 0 0.04 CISPEP 2 ILE A 330 PRO A 331 0 -16.11 CRYST1 107.209 107.209 134.918 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009328 0.005385 0.000000 0.00000 SCALE2 0.000000 0.010771 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007412 0.00000