data_1O5J # _entry.id 1O5J # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1O5J pdb_00001o5j 10.2210/pdb1o5j/pdb RCSB RCSB001829 ? ? WWPDB D_1000001829 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 282923 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 1O5J _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2003-09-19 _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf REL _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of Periplasmic divalent cation tolerance protein (TM1056) from Thermotoga maritima at 1.95 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.length_a 52.514 _cell.length_b 52.514 _cell.length_c 34.707 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.entry_id 1O5J _cell.pdbx_unique_axis ? _cell.Z_PDB 3 # _symmetry.space_group_name_H-M 'P 3' _symmetry.entry_id 1O5J _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 143 _symmetry.cell_setting ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'periplasmic divalent cation tolerance protein' 13748.500 1 ? ? ? ? 2 water nat water 18.015 74 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;MGSDKIHHHHHH(MSE)ILVYSTFPNEEKALEIGRKLLEKRLIACFNAFEIRSGYWWKGEIVQDKEWAAIFKTTEEKEKE LYEELRKLHPYETPAIFTLKVENVLTEY(MSE)NWLRESVL ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHMILVYSTFPNEEKALEIGRKLLEKRLIACFNAFEIRSGYWWKGEIVQDKEWAAIFKTTEEKEKELYEE LRKLHPYETPAIFTLKVENVLTEYMNWLRESVL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier 282923 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 MSE n 1 14 ILE n 1 15 LEU n 1 16 VAL n 1 17 TYR n 1 18 SER n 1 19 THR n 1 20 PHE n 1 21 PRO n 1 22 ASN n 1 23 GLU n 1 24 GLU n 1 25 LYS n 1 26 ALA n 1 27 LEU n 1 28 GLU n 1 29 ILE n 1 30 GLY n 1 31 ARG n 1 32 LYS n 1 33 LEU n 1 34 LEU n 1 35 GLU n 1 36 LYS n 1 37 ARG n 1 38 LEU n 1 39 ILE n 1 40 ALA n 1 41 CYS n 1 42 PHE n 1 43 ASN n 1 44 ALA n 1 45 PHE n 1 46 GLU n 1 47 ILE n 1 48 ARG n 1 49 SER n 1 50 GLY n 1 51 TYR n 1 52 TRP n 1 53 TRP n 1 54 LYS n 1 55 GLY n 1 56 GLU n 1 57 ILE n 1 58 VAL n 1 59 GLN n 1 60 ASP n 1 61 LYS n 1 62 GLU n 1 63 TRP n 1 64 ALA n 1 65 ALA n 1 66 ILE n 1 67 PHE n 1 68 LYS n 1 69 THR n 1 70 THR n 1 71 GLU n 1 72 GLU n 1 73 LYS n 1 74 GLU n 1 75 LYS n 1 76 GLU n 1 77 LEU n 1 78 TYR n 1 79 GLU n 1 80 GLU n 1 81 LEU n 1 82 ARG n 1 83 LYS n 1 84 LEU n 1 85 HIS n 1 86 PRO n 1 87 TYR n 1 88 GLU n 1 89 THR n 1 90 PRO n 1 91 ALA n 1 92 ILE n 1 93 PHE n 1 94 THR n 1 95 LEU n 1 96 LYS n 1 97 VAL n 1 98 GLU n 1 99 ASN n 1 100 VAL n 1 101 LEU n 1 102 THR n 1 103 GLU n 1 104 TYR n 1 105 MSE n 1 106 ASN n 1 107 TRP n 1 108 LEU n 1 109 ARG n 1 110 GLU n 1 111 SER n 1 112 VAL n 1 113 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Thermotoga _entity_src_gen.pdbx_gene_src_gene TM1056 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Thermotoga maritima' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 2336 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code CUTA_THEMA _struct_ref.pdbx_db_accession Q9X0E6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MILVYSTFPNEEKALEIGRKLLEKRLIACFNAFEIRSGYWWKGEIVQDKEWAAIFKTTEEKEKELYEELRKLHPYETPAI FTLKVENVLTEYMNWLRESVL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1O5J _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 13 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 113 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9X0E6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 101 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 101 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1O5J MET A 1 ? UNP Q9X0E6 ? ? 'expression tag' -11 1 1 1O5J GLY A 2 ? UNP Q9X0E6 ? ? 'expression tag' -10 2 1 1O5J SER A 3 ? UNP Q9X0E6 ? ? 'expression tag' -9 3 1 1O5J ASP A 4 ? UNP Q9X0E6 ? ? 'expression tag' -8 4 1 1O5J LYS A 5 ? UNP Q9X0E6 ? ? 'expression tag' -7 5 1 1O5J ILE A 6 ? UNP Q9X0E6 ? ? 'expression tag' -6 6 1 1O5J HIS A 7 ? UNP Q9X0E6 ? ? 'expression tag' -5 7 1 1O5J HIS A 8 ? UNP Q9X0E6 ? ? 'expression tag' -4 8 1 1O5J HIS A 9 ? UNP Q9X0E6 ? ? 'expression tag' -3 9 1 1O5J HIS A 10 ? UNP Q9X0E6 ? ? 'expression tag' -2 10 1 1O5J HIS A 11 ? UNP Q9X0E6 ? ? 'expression tag' -1 11 1 1O5J HIS A 12 ? UNP Q9X0E6 ? ? 'expression tag' 0 12 1 1O5J MSE A 13 ? UNP Q9X0E6 MET 1 'modified residue' 1 13 1 1O5J MSE A 105 ? UNP Q9X0E6 MET 93 'modified residue' 93 14 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 1O5J # _exptl_crystal.id 1 _exptl_crystal.density_percent_sol 39.45 _exptl_crystal.density_Matthews 2.05 _exptl_crystal.density_meas ? _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION,SITTING DROP,NANODROP' _exptl_crystal_grow.pH 10.5 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details '30% PEG-400, 0.1M CAPS pH 10.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type APS _diffrn_detector.details 'water cooled; sagitally focusing 2nd crystal, Rosenbaum-Rock vertical focusing mirror' _diffrn_detector.pdbx_collection_date 2002-10-25 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Rosenbaum-Rock double-crystal monochromator' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97944 1.0 2 0.97924 1.0 3 0.95658 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-BM _diffrn_source.type 'APS BEAMLINE 19-BM' _diffrn_source.pdbx_wavelength_list '0.97944, 0.97924, 0.95658' _diffrn_source.pdbx_wavelength ? # _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.95 _reflns.d_resolution_low 45.48 _reflns.number_obs 7337 _reflns.percent_possible_obs 100.00 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_netI_over_sigmaI 32.91 _reflns.B_iso_Wilson_estimate 41.58 _reflns.pdbx_redundancy 7.49 _reflns.pdbx_Rsym_value 0.068 _reflns.entry_id 1O5J _reflns.number_all ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.95 _reflns_shell.d_res_low 2.02 _reflns_shell.percent_possible_all 70.02 _reflns_shell.pdbx_Rsym_value 0.245 _reflns_shell.pdbx_redundancy 3.99 _reflns_shell.number_unique_all 563 _reflns_shell.meanI_over_sigI_obs 3.70 _reflns_shell.Rmerge_I_obs ? _reflns_shell.percent_possible_obs ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.ls_d_res_high 1.95 _refine.ls_d_res_low 45.48 _refine.pdbx_ls_sigma_F ? _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_obs 6993 _refine.ls_number_reflns_R_free 339 _refine.ls_percent_reflns_R_free 4.6 _refine.ls_percent_reflns_obs 93.94 _refine.ls_R_factor_obs 0.15907 _refine.ls_R_factor_R_work 0.15603 _refine.ls_R_factor_R_free 0.22061 _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_starting_model ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_isotropic_thermal_model ISOTROPIC _refine.B_iso_mean 39.270 _refine.aniso_B[1][1] -2.39 _refine.aniso_B[2][2] -2.39 _refine.aniso_B[3][3] 3.59 _refine.aniso_B[1][2] -1.20 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_overall_ESU_R 0.175 _refine.pdbx_overall_ESU_R_Free 0.166 _refine.overall_SU_ML 0.131 _refine.overall_SU_B 9.470 _refine.correlation_coeff_Fo_to_Fc 0.973 _refine.correlation_coeff_Fo_to_Fc_free 0.937 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.entry_id 1O5J _refine.ls_R_factor_all ? _refine.ls_number_reflns_all ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 890 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 74 _refine_hist.number_atoms_total 964 _refine_hist.d_res_high 1.95 _refine_hist.d_res_low 45.48 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 914 0.018 0.022 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 828 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1235 1.441 1.938 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 1928 0.804 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 103 6.361 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 46 39.307 23.913 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 172 16.609 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 5 23.559 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 131 0.097 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 984 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 193 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 180 0.206 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 796 0.193 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 553 0.089 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 55 0.239 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 12 0.148 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 58 0.214 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 11 0.232 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 625 2.511 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 843 3.116 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 466 5.692 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 392 7.133 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.95 _refine_ls_shell.d_res_low 2.002 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.number_reflns_R_work 356 _refine_ls_shell.R_factor_R_work 0.225 _refine_ls_shell.percent_reflns_R_free 5.07 _refine_ls_shell.number_reflns_R_free 19 _refine_ls_shell.R_factor_R_free 0.321 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1O5J _struct.title 'Crystal structure of Periplasmic divalent cation tolerance protein (TM1056) from Thermotoga maritima at 1.95 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;TM1056, PERIPLASMIC DIVALENT CATION TOLERANCE PROTEIN, STRUCTURAL GENOMICS, JCSG, PSI, Protein Structure Initiative, Joint Center for Structural Genomics, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'UNKNOWN FUNCTION' _struct_keywords.entry_id 1O5J # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 22 ? LYS A 36 ? ASN A 10 LYS A 24 1 ? 15 HELX_P HELX_P2 2 LYS A 73 ? HIS A 85 ? LYS A 61 HIS A 73 1 ? 13 HELX_P HELX_P3 3 LEU A 101 ? LEU A 113 ? LEU A 89 LEU A 101 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A HIS 12 C ? ? ? 1_555 A MSE 13 N ? ? A HIS 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.317 ? ? covale2 covale both ? A MSE 13 C ? ? ? 1_555 A ILE 14 N ? ? A MSE 1 A ILE 2 1_555 ? ? ? ? ? ? ? 1.333 ? ? covale3 covale both ? A TYR 104 C ? ? ? 1_555 A MSE 105 N ? ? A TYR 92 A MSE 93 1_555 ? ? ? ? ? ? ? 1.329 ? ? covale4 covale both ? A MSE 105 C ? ? ? 1_555 A ASN 106 N ? ? A MSE 93 A ASN 94 1_555 ? ? ? ? ? ? ? 1.332 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 CYS A 41 ? TRP A 53 ? CYS A 29 TRP A 41 A 2 GLU A 56 ? THR A 70 ? GLU A 44 THR A 58 A 3 MSE A 13 ? PHE A 20 ? MSE A 1 PHE A 8 A 4 ILE A 92 ? LYS A 96 ? ILE A 80 LYS A 84 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N PHE A 45 ? N PHE A 33 O ALA A 64 ? O ALA A 52 A 2 3 O THR A 69 ? O THR A 57 N ILE A 14 ? N ILE A 2 A 3 4 N TYR A 17 ? N TYR A 5 O PHE A 93 ? O PHE A 81 # _atom_sites.entry_id 1O5J _atom_sites.fract_transf_matrix[1][1] 0.019043 _atom_sites.fract_transf_matrix[1][2] 0.010994 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.021988 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.028813 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 -11 ? ? ? A . n A 1 2 GLY 2 -10 ? ? ? A . n A 1 3 SER 3 -9 ? ? ? A . n A 1 4 ASP 4 -8 ? ? ? A . n A 1 5 LYS 5 -7 ? ? ? A . n A 1 6 ILE 6 -6 ? ? ? A . n A 1 7 HIS 7 -5 ? ? ? A . n A 1 8 HIS 8 -4 ? ? ? A . n A 1 9 HIS 9 -3 ? ? ? A . n A 1 10 HIS 10 -2 -2 HIS HIS A . n A 1 11 HIS 11 -1 -1 HIS HIS A . n A 1 12 HIS 12 0 0 HIS HIS A . n A 1 13 MSE 13 1 1 MSE MSE A . n A 1 14 ILE 14 2 2 ILE ILE A . n A 1 15 LEU 15 3 3 LEU LEU A . n A 1 16 VAL 16 4 4 VAL VAL A . n A 1 17 TYR 17 5 5 TYR TYR A . n A 1 18 SER 18 6 6 SER SER A . n A 1 19 THR 19 7 7 THR THR A . n A 1 20 PHE 20 8 8 PHE PHE A . n A 1 21 PRO 21 9 9 PRO PRO A . n A 1 22 ASN 22 10 10 ASN ASN A . n A 1 23 GLU 23 11 11 GLU GLU A . n A 1 24 GLU 24 12 12 GLU GLU A . n A 1 25 LYS 25 13 13 LYS LYS A . n A 1 26 ALA 26 14 14 ALA ALA A . n A 1 27 LEU 27 15 15 LEU LEU A . n A 1 28 GLU 28 16 16 GLU GLU A . n A 1 29 ILE 29 17 17 ILE ILE A . n A 1 30 GLY 30 18 18 GLY GLY A . n A 1 31 ARG 31 19 19 ARG ARG A . n A 1 32 LYS 32 20 20 LYS LYS A . n A 1 33 LEU 33 21 21 LEU LEU A . n A 1 34 LEU 34 22 22 LEU LEU A . n A 1 35 GLU 35 23 23 GLU GLU A . n A 1 36 LYS 36 24 24 LYS LYS A . n A 1 37 ARG 37 25 25 ARG ARG A . n A 1 38 LEU 38 26 26 LEU LEU A . n A 1 39 ILE 39 27 27 ILE ILE A . n A 1 40 ALA 40 28 28 ALA ALA A . n A 1 41 CYS 41 29 29 CYS CYS A . n A 1 42 PHE 42 30 30 PHE PHE A . n A 1 43 ASN 43 31 31 ASN ASN A . n A 1 44 ALA 44 32 32 ALA ALA A . n A 1 45 PHE 45 33 33 PHE PHE A . n A 1 46 GLU 46 34 34 GLU GLU A . n A 1 47 ILE 47 35 35 ILE ILE A . n A 1 48 ARG 48 36 36 ARG ARG A . n A 1 49 SER 49 37 37 SER SER A . n A 1 50 GLY 50 38 38 GLY GLY A . n A 1 51 TYR 51 39 39 TYR TYR A . n A 1 52 TRP 52 40 40 TRP TRP A . n A 1 53 TRP 53 41 41 TRP TRP A . n A 1 54 LYS 54 42 42 LYS LYS A . n A 1 55 GLY 55 43 43 GLY GLY A . n A 1 56 GLU 56 44 44 GLU GLU A . n A 1 57 ILE 57 45 45 ILE ILE A . n A 1 58 VAL 58 46 46 VAL VAL A . n A 1 59 GLN 59 47 47 GLN GLN A . n A 1 60 ASP 60 48 48 ASP ASP A . n A 1 61 LYS 61 49 49 LYS LYS A . n A 1 62 GLU 62 50 50 GLU GLU A . n A 1 63 TRP 63 51 51 TRP TRP A . n A 1 64 ALA 64 52 52 ALA ALA A . n A 1 65 ALA 65 53 53 ALA ALA A . n A 1 66 ILE 66 54 54 ILE ILE A . n A 1 67 PHE 67 55 55 PHE PHE A . n A 1 68 LYS 68 56 56 LYS LYS A . n A 1 69 THR 69 57 57 THR THR A . n A 1 70 THR 70 58 58 THR THR A . n A 1 71 GLU 71 59 59 GLU GLU A . n A 1 72 GLU 72 60 60 GLU GLU A . n A 1 73 LYS 73 61 61 LYS LYS A . n A 1 74 GLU 74 62 62 GLU GLU A . n A 1 75 LYS 75 63 63 LYS LYS A . n A 1 76 GLU 76 64 64 GLU GLU A . n A 1 77 LEU 77 65 65 LEU LEU A . n A 1 78 TYR 78 66 66 TYR TYR A . n A 1 79 GLU 79 67 67 GLU GLU A . n A 1 80 GLU 80 68 68 GLU GLU A . n A 1 81 LEU 81 69 69 LEU LEU A . n A 1 82 ARG 82 70 70 ARG ARG A . n A 1 83 LYS 83 71 71 LYS LYS A . n A 1 84 LEU 84 72 72 LEU LEU A . n A 1 85 HIS 85 73 73 HIS HIS A . n A 1 86 PRO 86 74 74 PRO PRO A . n A 1 87 TYR 87 75 75 TYR TYR A . n A 1 88 GLU 88 76 76 GLU GLU A . n A 1 89 THR 89 77 77 THR THR A . n A 1 90 PRO 90 78 78 PRO PRO A . n A 1 91 ALA 91 79 79 ALA ALA A . n A 1 92 ILE 92 80 80 ILE ILE A . n A 1 93 PHE 93 81 81 PHE PHE A . n A 1 94 THR 94 82 82 THR THR A . n A 1 95 LEU 95 83 83 LEU LEU A . n A 1 96 LYS 96 84 84 LYS LYS A . n A 1 97 VAL 97 85 85 VAL VAL A . n A 1 98 GLU 98 86 86 GLU GLU A . n A 1 99 ASN 99 87 87 ASN ASN A . n A 1 100 VAL 100 88 88 VAL VAL A . n A 1 101 LEU 101 89 89 LEU LEU A . n A 1 102 THR 102 90 90 THR THR A . n A 1 103 GLU 103 91 91 GLU GLU A . n A 1 104 TYR 104 92 92 TYR TYR A . n A 1 105 MSE 105 93 93 MSE MSE A . n A 1 106 ASN 106 94 94 ASN ASN A . n A 1 107 TRP 107 95 95 TRP TRP A . n A 1 108 LEU 108 96 96 LEU LEU A . n A 1 109 ARG 109 97 97 ARG ARG A . n A 1 110 GLU 110 98 98 GLU GLU A . n A 1 111 SER 111 99 99 SER SER A . n A 1 112 VAL 112 100 100 VAL VAL A . n A 1 113 LEU 113 101 101 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 102 102 HOH HOH A . B 2 HOH 2 104 104 HOH HOH A . B 2 HOH 3 105 105 HOH HOH A . B 2 HOH 4 106 106 HOH HOH A . B 2 HOH 5 107 107 HOH HOH A . B 2 HOH 6 108 108 HOH HOH A . B 2 HOH 7 109 109 HOH HOH A . B 2 HOH 8 110 110 HOH HOH A . B 2 HOH 9 111 111 HOH HOH A . B 2 HOH 10 112 112 HOH HOH A . B 2 HOH 11 113 113 HOH HOH A . B 2 HOH 12 114 114 HOH HOH A . B 2 HOH 13 115 115 HOH HOH A . B 2 HOH 14 116 116 HOH HOH A . B 2 HOH 15 117 117 HOH HOH A . B 2 HOH 16 118 118 HOH HOH A . B 2 HOH 17 119 119 HOH HOH A . B 2 HOH 18 120 120 HOH HOH A . B 2 HOH 19 121 121 HOH HOH A . B 2 HOH 20 122 122 HOH HOH A . B 2 HOH 21 123 123 HOH HOH A . B 2 HOH 22 124 124 HOH HOH A . B 2 HOH 23 125 125 HOH HOH A . B 2 HOH 24 126 126 HOH HOH A . B 2 HOH 25 127 127 HOH HOH A . B 2 HOH 26 128 128 HOH HOH A . B 2 HOH 27 129 129 HOH HOH A . B 2 HOH 28 131 131 HOH HOH A . B 2 HOH 29 134 134 HOH HOH A . B 2 HOH 30 135 135 HOH HOH A . B 2 HOH 31 137 137 HOH HOH A . B 2 HOH 32 138 138 HOH HOH A . B 2 HOH 33 139 139 HOH HOH A . B 2 HOH 34 140 140 HOH HOH A . B 2 HOH 35 141 141 HOH HOH A . B 2 HOH 36 142 142 HOH HOH A . B 2 HOH 37 143 143 HOH HOH A . B 2 HOH 38 144 144 HOH HOH A . B 2 HOH 39 145 145 HOH HOH A . B 2 HOH 40 146 146 HOH HOH A . B 2 HOH 41 147 147 HOH HOH A . B 2 HOH 42 148 148 HOH HOH A . B 2 HOH 43 149 149 HOH HOH A . B 2 HOH 44 150 150 HOH HOH A . B 2 HOH 45 151 151 HOH HOH A . B 2 HOH 46 152 152 HOH HOH A . B 2 HOH 47 153 153 HOH HOH A . B 2 HOH 48 154 154 HOH HOH A . B 2 HOH 49 155 155 HOH HOH A . B 2 HOH 50 156 156 HOH HOH A . B 2 HOH 51 157 157 HOH HOH A . B 2 HOH 52 158 158 HOH HOH A . B 2 HOH 53 159 159 HOH HOH A . B 2 HOH 54 160 160 HOH HOH A . B 2 HOH 55 161 161 HOH HOH A . B 2 HOH 56 162 162 HOH HOH A . B 2 HOH 57 163 163 HOH HOH A . B 2 HOH 58 164 164 HOH HOH A . B 2 HOH 59 165 165 HOH HOH A . B 2 HOH 60 166 166 HOH HOH A . B 2 HOH 61 167 167 HOH HOH A . B 2 HOH 62 169 169 HOH HOH A . B 2 HOH 63 170 170 HOH HOH A . B 2 HOH 64 171 171 HOH HOH A . B 2 HOH 65 172 172 HOH HOH A . B 2 HOH 66 173 173 HOH HOH A . B 2 HOH 67 174 174 HOH HOH A . B 2 HOH 68 175 175 HOH HOH A . B 2 HOH 69 176 176 HOH HOH A . B 2 HOH 70 177 177 HOH HOH A . B 2 HOH 71 178 178 HOH HOH A . B 2 HOH 72 179 179 HOH HOH A . B 2 HOH 73 180 180 HOH HOH A . B 2 HOH 74 181 181 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 13 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 105 A MSE 93 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 6570 ? 1 MORE -44 ? 1 'SSA (A^2)' 13600 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_775 -y+2,x-y+2,z -0.5000000000 -0.8660254038 0.0000000000 52.5140000000 0.8660254038 -0.5000000000 0.0000000000 90.9569161087 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_575 -x+y,-x+2,z -0.5000000000 0.8660254038 0.0000000000 -52.5140000000 -0.8660254038 -0.5000000000 0.0000000000 90.9569161087 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 127 ? B HOH . 2 1 A HOH 140 ? B HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-09-30 2 'Structure model' 1 1 2008-04-26 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-07-18 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Derived calculations' 4 3 'Structure model' 'Version format compliance' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' 7 5 'Structure model' 'Database references' 8 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_related 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' # _pdbx_refine_tls.id 1 _pdbx_refine_tls.details . _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x -8.4640 _pdbx_refine_tls.origin_y 52.9350 _pdbx_refine_tls.origin_z 24.3780 _pdbx_refine_tls.T[1][1] -0.1697 _pdbx_refine_tls.T[2][2] -0.1922 _pdbx_refine_tls.T[3][3] -0.1708 _pdbx_refine_tls.T[1][2] -0.0176 _pdbx_refine_tls.T[1][3] 0.0042 _pdbx_refine_tls.T[2][3] 0.0569 _pdbx_refine_tls.L[1][1] 4.7897 _pdbx_refine_tls.L[2][2] 2.8242 _pdbx_refine_tls.L[3][3] 1.5748 _pdbx_refine_tls.L[1][2] -1.0135 _pdbx_refine_tls.L[1][3] -0.8635 _pdbx_refine_tls.L[2][3] 0.3902 _pdbx_refine_tls.S[1][1] 0.0623 _pdbx_refine_tls.S[2][2] -0.0623 _pdbx_refine_tls.S[3][3] 0.0000 _pdbx_refine_tls.S[1][2] -0.3280 _pdbx_refine_tls.S[1][3] -0.3740 _pdbx_refine_tls.S[2][3] 0.3014 _pdbx_refine_tls.S[2][1] 0.1637 _pdbx_refine_tls.S[3][1] 0.1072 _pdbx_refine_tls.S[3][2] -0.1999 _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' # _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_label_asym_id A _pdbx_refine_tls_group.beg_label_seq_id 10 _pdbx_refine_tls_group.end_label_asym_id A _pdbx_refine_tls_group.end_label_seq_id 113 _pdbx_refine_tls_group.selection ALL _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -2 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 101 _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.selection_details ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 SOLVE phasing . ? 3 RESOLVE 'model building' . ? 4 REFMAC refinement 5.1.9999 ? 5 RESOLVE phasing . ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 118 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 148 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.14 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 LYS _pdbx_validate_rmsd_bond.auth_seq_id_1 42 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 O _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 LYS _pdbx_validate_rmsd_bond.auth_seq_id_2 42 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.390 _pdbx_validate_rmsd_bond.bond_target_value 1.229 _pdbx_validate_rmsd_bond.bond_deviation 0.161 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.019 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id HIS _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 0 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -140.79 _pdbx_validate_torsion.psi 44.70 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 1 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id LYS _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 71 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id NZ _pdbx_unobs_or_zero_occ_atoms.label_alt_id ? _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id LYS _pdbx_unobs_or_zero_occ_atoms.label_seq_id 83 _pdbx_unobs_or_zero_occ_atoms.label_atom_id NZ # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET -11 ? A MET 1 2 1 Y 1 A GLY -10 ? A GLY 2 3 1 Y 1 A SER -9 ? A SER 3 4 1 Y 1 A ASP -8 ? A ASP 4 5 1 Y 1 A LYS -7 ? A LYS 5 6 1 Y 1 A ILE -6 ? A ILE 6 7 1 Y 1 A HIS -5 ? A HIS 7 8 1 Y 1 A HIS -4 ? A HIS 8 9 1 Y 1 A HIS -3 ? A HIS 9 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #