HEADER UNKNOWN FUNCTION 06-OCT-03 1O5U TITLE CRYSTAL STRUCTURE OF A DUF861 FAMILY PROTEIN (TM1112) FROM THERMOTOGA TITLE 2 MARITIMA AT 1.83 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOVEL THERMOTOGA MARITIMA ENZYME TM1112; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: TM1112; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CUPIN, NOVEL THERMOTOGA MARITIMA ENZYME, STRUCTURAL GENOMICS, JOINT KEYWDS 2 CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, KEYWDS 3 PSI, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 12 13-NOV-24 1O5U 1 REMARK REVDAT 11 20-SEP-23 1O5U 1 REMARK REVDAT 10 25-JAN-23 1O5U 1 REMARK SEQADV LINK REVDAT 9 18-JUL-18 1O5U 1 REMARK REVDAT 8 13-JUL-11 1O5U 1 VERSN REVDAT 7 23-MAR-11 1O5U 1 HEADER TITLE KEYWDS REVDAT 6 24-FEB-09 1O5U 1 VERSN REVDAT 5 20-SEP-05 1O5U 1 JRNL REVDAT 4 08-MAR-05 1O5U 1 JRNL REVDAT 3 18-JAN-05 1O5U 1 AUTHOR KEYWDS REMARK REVDAT 2 03-AUG-04 1O5U 1 JRNL TITLE KEYWDS COMPND REVDAT 1 11-NOV-03 1O5U 0 JRNL AUTH D.MCMULLAN,R.SCHWARZENBACHER,L.JAROSZEWSKI,F.VON DELFT, JRNL AUTH 2 H.E.KLOCK,J.VINCENT,K.QUIJANO,P.ABDUBEK,E.AMBING,T.BIORAC, JRNL AUTH 3 L.S.BRINEN,J.M.CANAVES,X.DAI,A.M.DEACON,M.DIDONATO, JRNL AUTH 4 M.A.ELSLIGER,S.ESHAGHI,R.FLOYD,A.GODZIK,C.GRITTINI, JRNL AUTH 5 S.K.GRZECHNIK,E.HAMPTON,C.KARLAK,E.KOESEMA,A.KREUSCH,P.KUHN, JRNL AUTH 6 I.LEVIN,T.M.MCPHILLIPS,M.D.MILLER,A.MORSE,K.MOY,J.OUYANG, JRNL AUTH 7 R.PAGE,R.REYES,F.REZEZADEH,A.ROBB,E.SIMS,G.SPRAGGON, JRNL AUTH 8 R.C.STEVENS,H.VAN DEN BEDEM,J.VELASQUEZ,X.WANG,B.WEST, JRNL AUTH 9 G.WOLF,Q.XU,K.O.HODGSON,J.WOOLEY,S.A.LESLEY,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF A NOVEL THERMOTOGA MARITIMA ENZYME JRNL TITL 2 (TM1112) FROM THE CUPIN FAMILY AT 1.83 A RESOLUTION JRNL REF PROTEINS V. 56 615 2004 JRNL REFN ISSN 0887-3585 JRNL PMID 15229894 JRNL DOI 10.1002/PROT.20139 REMARK 2 REMARK 2 RESOLUTION. 1.83 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.9999 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.83 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.98 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.2 REMARK 3 NUMBER OF REFLECTIONS : 20232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1071 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.83 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.88 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1445 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1970 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2460 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1504 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 13 REMARK 3 SOLVENT ATOMS : 282 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 36.92 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.84000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.38000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.119 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.124 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.087 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.520 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1549 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1393 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2097 ; 1.649 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3280 ; 0.842 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 174 ; 7.884 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 72 ;28.751 ;24.722 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 299 ;12.710 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 6 ;24.740 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 222 ; 0.117 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1640 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 302 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 241 ; 0.194 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1367 ; 0.179 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 941 ; 0.084 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1 ; 0.078 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.227 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 28 ; 0.343 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 18 ; 0.191 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1181 ; 1.360 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1454 ; 1.496 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 930 ; 2.821 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 643 ; 3.506 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 13.2477 -0.6503 12.6328 REMARK 3 T TENSOR REMARK 3 T11: -0.1647 T22: -0.2042 REMARK 3 T33: -0.2129 T12: -0.0196 REMARK 3 T13: 0.0346 T23: -0.0108 REMARK 3 L TENSOR REMARK 3 L11: 4.4003 L22: 2.2828 REMARK 3 L33: 2.0222 L12: -0.3671 REMARK 3 L13: 0.4284 L23: -0.0449 REMARK 3 S TENSOR REMARK 3 S11: 0.0301 S12: -0.2825 S13: 0.1317 REMARK 3 S21: 0.1708 S22: 0.0287 S23: 0.1516 REMARK 3 S31: 0.1839 S32: -0.0118 S33: -0.0588 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 89 REMARK 3 ORIGIN FOR THE GROUP (A): 31.4617 -19.4877 6.4856 REMARK 3 T TENSOR REMARK 3 T11: -0.2088 T22: -0.1947 REMARK 3 T33: -0.1817 T12: 0.0012 REMARK 3 T13: -0.0437 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 2.8504 L22: 2.7597 REMARK 3 L33: 4.2698 L12: -0.0040 REMARK 3 L13: -0.9305 L23: 0.4697 REMARK 3 S TENSOR REMARK 3 S11: -0.0672 S12: 0.0387 S13: -0.2489 REMARK 3 S21: 0.1787 S22: 0.0858 S23: -0.1594 REMARK 3 S31: -0.0632 S32: 0.0994 S33: -0.0186 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. THE UNIDENTIFIABLE SPECIES COVALENTLY BOUND REMARK 3 TO LYS84 HAS BEEN MODELED AS RESIDUE UNL, UNKNOWN LIGAND, AND REMARK 3 ATOM TYPE C TO ACCOUNT FOR THE SCATTERING STRENGTH. REMARK 4 REMARK 4 1O5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-OCT-03. REMARK 100 THE DEPOSITION ID IS D_1000001835. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97001 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(311) BENT REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 5.0), CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21322 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.810 REMARK 200 RESOLUTION RANGE LOW (A) : 36.760 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 2.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04500 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.81 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 34.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.30700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1LKN REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25.5% PEG-4000, 0.17M AMMONIUM REMARK 280 SULFATE, 15% GLYCEROL ANHYDROUS , VAPOR DIFFUSION,SITTING DROP, REMARK 280 NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 37.36450 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -11 REMARK 465 GLY A -10 REMARK 465 SER A -9 REMARK 465 ASP A -8 REMARK 465 LYS A -7 REMARK 465 ILE A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 MET B -11 REMARK 465 GLY B -10 REMARK 465 SER B -9 REMARK 465 ASP B -8 REMARK 465 LYS B -7 REMARK 465 ILE B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 538 O HOH B 539 1.69 REMARK 500 O HOH A 403 O HOH A 482 1.84 REMARK 500 CE LYS B 84 C1 UNL B 402 2.00 REMARK 500 O HOH B 471 O HOH B 488 2.02 REMARK 500 O HOH B 543 O HOH B 544 2.03 REMARK 500 O HOH B 495 O HOH B 545 2.11 REMARK 500 OE1 GLU A 27 O HOH A 415 2.13 REMARK 500 O LEU B 16 O HOH B 543 2.15 REMARK 500 CE LYS A 84 C1 UNL A 401 2.17 REMARK 500 OE2 GLU B 61 O HOH B 460 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 54 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ARG B 83 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER B 29 169.51 179.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU B 2 VAL B 3 134.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 THE UNIDENTIFIABLE SPECIES COVALENTLY REMARK 600 BOUND TO LYS84 HAS BEEN MODELED AS RESIDUE UNL, REMARK 600 UNKNOWN LIGAND, AND ATOM TYPE C TO ACCOUNT FOR REMARK 600 THE SCATTERING STRENGTH. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNL B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 282978 RELATED DB: TARGETDB DBREF 1O5U A 1 89 UNP Q9X0J6 Q9X0J6_THEMA 1 89 DBREF 1O5U B 1 89 UNP Q9X0J6 Q9X0J6_THEMA 1 89 SEQADV 1O5U MET A -11 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U GLY A -10 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U SER A -9 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U ASP A -8 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U LYS A -7 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U ILE A -6 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS A -5 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS A -4 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS A -3 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS A -2 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS A -1 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS A 0 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U MET B -11 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U GLY B -10 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U SER B -9 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U ASP B -8 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U LYS B -7 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U ILE B -6 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS B -5 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS B -4 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS B -3 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS B -2 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS B -1 UNP Q9X0J6 EXPRESSION TAG SEQADV 1O5U HIS B 0 UNP Q9X0J6 EXPRESSION TAG SEQRES 1 A 101 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 A 101 GLU VAL LYS ILE GLU LYS PRO THR PRO GLU LYS LEU LYS SEQRES 3 A 101 GLU LEU SER VAL GLU LYS TRP PRO ILE TRP GLU LYS GLU SEQRES 4 A 101 VAL SER GLU PHE ASP TRP TYR TYR ASP THR ASN GLU THR SEQRES 5 A 101 CYS TYR ILE LEU GLU GLY LYS VAL GLU VAL THR THR GLU SEQRES 6 A 101 ASP GLY LYS LYS TYR VAL ILE GLU LYS GLY ASP LEU VAL SEQRES 7 A 101 THR PHE PRO LYS GLY LEU ARG CYS ARG TRP LYS VAL LEU SEQRES 8 A 101 GLU PRO VAL ARG LYS HIS TYR ASN LEU PHE SEQRES 1 B 101 MET GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS MET SEQRES 2 B 101 GLU VAL LYS ILE GLU LYS PRO THR PRO GLU LYS LEU LYS SEQRES 3 B 101 GLU LEU SER VAL GLU LYS TRP PRO ILE TRP GLU LYS GLU SEQRES 4 B 101 VAL SER GLU PHE ASP TRP TYR TYR ASP THR ASN GLU THR SEQRES 5 B 101 CYS TYR ILE LEU GLU GLY LYS VAL GLU VAL THR THR GLU SEQRES 6 B 101 ASP GLY LYS LYS TYR VAL ILE GLU LYS GLY ASP LEU VAL SEQRES 7 B 101 THR PHE PRO LYS GLY LEU ARG CYS ARG TRP LYS VAL LEU SEQRES 8 B 101 GLU PRO VAL ARG LYS HIS TYR ASN LEU PHE HET UNL A 401 5 HET UNL B 402 5 HET UNL B 403 3 HETNAM UNL UNKNOWN LIGAND FORMUL 6 HOH *282(H2 O) HELIX 1 1 THR A 9 SER A 17 1 9 HELIX 2 2 VAL A 18 TRP A 21 5 4 HELIX 3 3 THR B 9 SER B 17 1 9 HELIX 4 4 VAL B 18 TRP B 21 5 4 SHEET 1 A 5 LYS A 4 GLU A 6 0 SHEET 2 A 5 LEU A 65 PHE A 68 -1 O LEU A 65 N GLU A 6 SHEET 3 A 5 GLU A 39 THR A 52 -1 N GLU A 39 O PHE A 68 SHEET 4 A 5 ARG A 73 LEU A 88 -1 O HIS A 85 N TYR A 42 SHEET 5 A 5 SER A 29 TYR A 34 -1 N PHE A 31 O TRP A 76 SHEET 1 B 4 ILE A 23 LYS A 26 0 SHEET 2 B 4 ARG A 73 LEU A 88 -1 O LYS A 84 N TRP A 24 SHEET 3 B 4 GLU A 39 THR A 52 -1 N TYR A 42 O HIS A 85 SHEET 4 B 4 LYS A 57 GLU A 61 -1 O ILE A 60 N VAL A 48 SHEET 1 C 5 LYS B 4 GLU B 6 0 SHEET 2 C 5 LEU B 65 PHE B 68 -1 O LEU B 65 N GLU B 6 SHEET 3 C 5 GLU B 39 THR B 52 -1 N CYS B 41 O VAL B 66 SHEET 4 C 5 ARG B 73 LEU B 88 -1 O ASN B 87 N THR B 40 SHEET 5 C 5 SER B 29 TYR B 34 -1 N PHE B 31 O TRP B 76 SHEET 1 D 4 ILE B 23 LYS B 26 0 SHEET 2 D 4 ARG B 73 LEU B 88 -1 O VAL B 82 N LYS B 26 SHEET 3 D 4 GLU B 39 THR B 52 -1 N THR B 40 O ASN B 87 SHEET 4 D 4 LYS B 57 GLU B 61 -1 O ILE B 60 N VAL B 48 LINK NZ LYS A 84 C1 UNL A 401 1555 1555 1.61 LINK NZ LYS B 84 C1 UNL B 402 1555 1555 1.54 SITE 1 AC1 5 TYR A 35 GLU A 39 CYS A 41 TRP A 76 SITE 2 AC1 5 LYS A 84 SITE 1 AC2 5 TYR B 35 GLU B 39 CYS B 41 TRP B 76 SITE 2 AC2 5 LYS B 84 SITE 1 AC3 5 LYS A 57 HOH A 516 PRO B 22 ILE B 23 SITE 2 AC3 5 HOH B 541 CRYST1 39.627 74.729 42.210 90.00 91.02 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025235 0.000000 0.000449 0.00000 SCALE2 0.000000 0.013382 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023695 0.00000