HEADER TRANSFERASE 21-OCT-02 1O6Y TITLE CATALYTIC DOMAIN OF PKNB KINASE FROM MYCOBACTERIUM TUBERCULOSIS COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PKNB; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, RESIDUES 1-279; COMPND 5 SYNONYM: PKNB; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 9 OTHER_DETAILS: INSTITUT PASTEUR COLLECTION KEYWDS SERINE/THREONINE PROTEIN KINASE, TRANSFERASE, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, TB STRUCTURAL GENOMICS CONSORTIUM, TB, TBSGC EXPDTA X-RAY DIFFRACTION AUTHOR M.ORTIZ-LOMBARDIA,F.POMPEO,B.BOITEL,P.M.ALZARI,TB STRUCTURAL GENOMICS AUTHOR 2 CONSORTIUM (TBSGC) REVDAT 11 13-DEC-23 1O6Y 1 REMARK LINK REVDAT 10 21-AUG-19 1O6Y 1 REMARK REVDAT 9 15-MAY-19 1O6Y 1 REMARK REVDAT 8 24-MAY-17 1O6Y 1 AUTHOR REVDAT 7 13-JUL-11 1O6Y 1 VERSN REVDAT 6 21-JUL-09 1O6Y 1 REMARK MASTER REVDAT 5 24-FEB-09 1O6Y 1 VERSN REVDAT 4 03-FEB-05 1O6Y 1 KEYWDS REVDAT 3 24-JAN-05 1O6Y 1 KEYWDS AUTHOR REMARK REVDAT 2 10-APR-03 1O6Y 1 JRNL REMARK REVDAT 1 30-JAN-03 1O6Y 0 JRNL AUTH M.ORTIZ-LOMBARDIA,F.POMPEO,B.BOITEL,P.M.ALZARI JRNL TITL CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE PKNB JRNL TITL 2 SERINE/THREONINE KINASE FROM MYCOBACTERIUM TUBERCULOSIS JRNL REF J.BIOL.CHEM. V. 278 13094 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12551895 JRNL DOI 10.1074/JBC.M300660200 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 16292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1195 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 59 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1953 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 33 REMARK 3 SOLVENT ATOMS : 85 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.52000 REMARK 3 B22 (A**2) : -3.59000 REMARK 3 B33 (A**2) : 4.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.217 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.184 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.141 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.608 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2026 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2767 ; 1.623 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 258 ; 4.192 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 320 ; 0.115 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1541 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 840 ; 0.205 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 2 ; 0.062 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 26 ; 0.209 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 11 ; 0.279 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1299 ; 0.790 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2090 ; 1.406 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 727 ; 2.533 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 677 ; 3.763 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 97 REMARK 3 ORIGIN FOR THE GROUP (A): 75.1064 71.5977 25.0741 REMARK 3 T TENSOR REMARK 3 T11: 0.1144 T22: 0.1231 REMARK 3 T33: 0.2822 T12: 0.0375 REMARK 3 T13: -0.0341 T23: -0.0621 REMARK 3 L TENSOR REMARK 3 L11: 3.8276 L22: 5.3644 REMARK 3 L33: 4.6566 L12: -0.2260 REMARK 3 L13: -1.3476 L23: -0.1798 REMARK 3 S TENSOR REMARK 3 S11: -0.0976 S12: 0.0133 S13: 0.2779 REMARK 3 S21: 0.0536 S22: -0.0422 S23: 1.0543 REMARK 3 S31: -0.3597 S32: -0.7030 S33: 0.1398 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 98 A 278 REMARK 3 ORIGIN FOR THE GROUP (A): 99.2916 81.3507 17.4130 REMARK 3 T TENSOR REMARK 3 T11: 0.0724 T22: 0.0675 REMARK 3 T33: 0.0148 T12: 0.0385 REMARK 3 T13: 0.0134 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 5.7436 L22: 4.6718 REMARK 3 L33: 3.1234 L12: 1.2839 REMARK 3 L13: -1.0752 L23: 0.0242 REMARK 3 S TENSOR REMARK 3 S11: 0.1102 S12: -0.0903 S13: 0.3283 REMARK 3 S21: -0.0189 S22: -0.0667 S23: -0.0839 REMARK 3 S31: -0.1283 S32: 0.1966 S33: -0.0435 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1279 A 1279 REMARK 3 ORIGIN FOR THE GROUP (A): 83.0089 77.9436 25.8829 REMARK 3 T TENSOR REMARK 3 T11: 0.0398 T22: 0.1537 REMARK 3 T33: 0.1226 T12: 0.0676 REMARK 3 T13: -0.0245 T23: -0.0466 REMARK 3 L TENSOR REMARK 3 L11: 14.0382 L22: 40.4748 REMARK 3 L33: 25.4652 L12: -16.6443 REMARK 3 L13: 26.0424 L23: -30.5662 REMARK 3 S TENSOR REMARK 3 S11: 0.0025 S12: -0.4727 S13: 0.6087 REMARK 3 S21: 0.4572 S22: 0.4664 S23: -0.5314 REMARK 3 S31: -0.6783 S32: -0.7214 S33: -0.4688 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1O6Y COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 21-OCT-02. REMARK 100 THE DEPOSITION ID IS D_1290011564. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17152 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 60.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 8.000 REMARK 200 R MERGE (I) : 0.07900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 8.10 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1PHK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN CRYSTALLIZED FROM 27% PEG 400, REMARK 280 4% 1,3-BUTANEDIOL, 100 MM HEPES, PH 7.5, 30 MM MGCL2 AT 19 REMARK 280 DEGREES C, PH 7.50, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 23.48750 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 23.48750 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 57.30350 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 61.04400 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 57.30350 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 61.04400 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 23.48750 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 57.30350 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 61.04400 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 23.48750 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 57.30350 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 61.04400 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 THR A 2 REMARK 465 ALA A 164 REMARK 465 ASP A 165 REMARK 465 SER A 166 REMARK 465 GLY A 167 REMARK 465 ASN A 168 REMARK 465 SER A 169 REMARK 465 VAL A 170 REMARK 465 THR A 171 REMARK 465 GLN A 172 REMARK 465 THR A 173 REMARK 465 ALA A 174 REMARK 465 ALA A 175 REMARK 465 VAL A 176 REMARK 465 ILE A 177 REMARK 465 GLY A 178 REMARK 465 THR A 179 REMARK 465 GLY A 279 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 15 OE1 OE2 REMARK 470 TYR A 53 CD1 CD2 CE1 CE2 CZ OH REMARK 470 LEU A 54 CD1 CD2 REMARK 470 ARG A 55 CD NE CZ NH1 NH2 REMARK 470 ARG A 57 NE CZ NH1 NH2 REMARK 470 ARG A 58 NE CZ NH1 NH2 REMARK 470 GLU A 79 CD OE1 OE2 REMARK 470 GLU A 81 CG CD OE1 OE2 REMARK 470 GLU A 107 OE1 OE2 REMARK 470 LYS A 113 CD CE NZ REMARK 470 LYS A 140 NZ REMARK 470 ARG A 161 CD NE CZ NH1 NH2 REMARK 470 ASP A 219 CB CG OD1 OD2 REMARK 470 GLU A 231 OE1 OE2 REMARK 470 GLU A 241 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG A 230 O HOH A 2062 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 226 CG TYR A 226 CD1 0.094 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 156 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 ASP A 248 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 10 -43.48 -139.63 REMARK 500 ALA A 44 -49.09 91.31 REMARK 500 ARG A 137 -5.94 71.79 REMARK 500 ASP A 156 83.57 67.82 REMARK 500 ALA A 160 150.02 -49.34 REMARK 500 ASP A 191 -177.24 -66.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1280 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 143 OD1 REMARK 620 2 ASP A 156 OD1 90.1 REMARK 620 3 ACP A1279 O1A 90.2 99.3 REMARK 620 4 ACP A1279 O1B 176.7 88.3 92.9 REMARK 620 5 HOH A2079 O 81.7 169.5 87.4 99.6 REMARK 620 6 HOH A2080 O 89.1 90.8 169.8 88.0 82.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1281 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ACP A1279 O2B REMARK 620 2 ACP A1279 O1G 92.6 REMARK 620 3 HOH A2054 O 90.4 174.8 REMARK 620 4 HOH A2055 O 93.5 97.1 87.0 REMARK 620 5 HOH A2081 O 84.1 79.8 96.3 175.9 REMARK 620 6 HOH A2082 O 176.6 85.8 91.0 89.7 92.7 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1280 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 1281 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACP A 1279 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: RV0014C RELATED DB: TARGETDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES IN THE N-TERMINAL TAG (1-22) ARE DISORDERED. REMARK 999 SIXTEEN RESIDUES (164-179) IN THE ACTIVATION LOOP ARE ALSO REMARK 999 DISORDERED. DBREF 1O6Y A 1 279 UNP P0A5S4 PKNB_MYCTU 1 279 SEQADV 1O6Y MET A -19 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y GLY A -18 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y SER A -17 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y SER A -16 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y HIS A -15 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y HIS A -14 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y HIS A -13 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y HIS A -12 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y HIS A -11 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y HIS A -10 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y SER A -9 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y SER A -8 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y GLY A -7 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y LEU A -6 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y VAL A -5 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y PRO A -4 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y ARG A -3 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y GLY A -2 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y SER A -1 UNP P0A5S4 EXPRESSION TAG SEQADV 1O6Y HIS A 0 UNP P0A5S4 EXPRESSION TAG SEQRES 1 A 299 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 299 LEU VAL PRO ARG GLY SER HIS MET THR THR PRO SER HIS SEQRES 3 A 299 LEU SER ASP ARG TYR GLU LEU GLY GLU ILE LEU GLY PHE SEQRES 4 A 299 GLY GLY MET SER GLU VAL HIS LEU ALA ARG ASP LEU ARG SEQRES 5 A 299 LEU HIS ARG ASP VAL ALA VAL LYS VAL LEU ARG ALA ASP SEQRES 6 A 299 LEU ALA ARG ASP PRO SER PHE TYR LEU ARG PHE ARG ARG SEQRES 7 A 299 GLU ALA GLN ASN ALA ALA ALA LEU ASN HIS PRO ALA ILE SEQRES 8 A 299 VAL ALA VAL TYR ASP THR GLY GLU ALA GLU THR PRO ALA SEQRES 9 A 299 GLY PRO LEU PRO TYR ILE VAL MET GLU TYR VAL ASP GLY SEQRES 10 A 299 VAL THR LEU ARG ASP ILE VAL HIS THR GLU GLY PRO MET SEQRES 11 A 299 THR PRO LYS ARG ALA ILE GLU VAL ILE ALA ASP ALA CYS SEQRES 12 A 299 GLN ALA LEU ASN PHE SER HIS GLN ASN GLY ILE ILE HIS SEQRES 13 A 299 ARG ASP VAL LYS PRO ALA ASN ILE MET ILE SER ALA THR SEQRES 14 A 299 ASN ALA VAL LYS VAL MET ASP PHE GLY ILE ALA ARG ALA SEQRES 15 A 299 ILE ALA ASP SER GLY ASN SER VAL THR GLN THR ALA ALA SEQRES 16 A 299 VAL ILE GLY THR ALA GLN TYR LEU SER PRO GLU GLN ALA SEQRES 17 A 299 ARG GLY ASP SER VAL ASP ALA ARG SER ASP VAL TYR SER SEQRES 18 A 299 LEU GLY CYS VAL LEU TYR GLU VAL LEU THR GLY GLU PRO SEQRES 19 A 299 PRO PHE THR GLY ASP SER PRO VAL SER VAL ALA TYR GLN SEQRES 20 A 299 HIS VAL ARG GLU ASP PRO ILE PRO PRO SER ALA ARG HIS SEQRES 21 A 299 GLU GLY LEU SER ALA ASP LEU ASP ALA VAL VAL LEU LYS SEQRES 22 A 299 ALA LEU ALA LYS ASN PRO GLU ASN ARG TYR GLN THR ALA SEQRES 23 A 299 ALA GLU MET ARG ALA ASP LEU VAL ARG VAL HIS ASN GLY HET ACP A1279 31 HET MG A1280 1 HET MG A1281 1 HETNAM ACP PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER HETNAM MG MAGNESIUM ION HETSYN ACP ADENOSINE-5'-[BETA, GAMMA-METHYLENE]TRIPHOSPHATE FORMUL 2 ACP C11 H18 N5 O12 P3 FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *85(H2 O) HELIX 1 1 ASP A 49 ALA A 65 1 17 HELIX 2 2 LEU A 100 GLY A 108 1 9 HELIX 3 3 THR A 111 ASN A 132 1 22 HELIX 4 4 LYS A 140 ALA A 142 5 3 HELIX 5 5 SER A 184 ARG A 189 1 6 HELIX 6 6 ASP A 194 GLY A 212 1 19 HELIX 7 7 SER A 220 GLU A 231 1 12 HELIX 8 8 PRO A 235 ARG A 239 5 5 HELIX 9 9 SER A 244 LEU A 255 1 12 HELIX 10 10 ASN A 258 ARG A 262 5 5 HELIX 11 11 THR A 265 ASN A 278 1 14 SHEET 1 AA 6 HIS A 6 LEU A 7 0 SHEET 2 AA 6 TYR A 11 PHE A 19 -1 O TYR A 11 N LEU A 7 SHEET 3 AA 6 SER A 23 ASP A 30 -1 O VAL A 25 N LEU A 17 SHEET 4 AA 6 ARG A 35 LEU A 42 -1 O ARG A 35 N ASP A 30 SHEET 5 AA 6 PRO A 86 GLU A 93 -1 O PRO A 88 N LEU A 42 SHEET 6 AA 6 VAL A 74 GLU A 81 -1 N TYR A 75 O VAL A 91 SHEET 1 AB 3 GLY A 97 THR A 99 0 SHEET 2 AB 3 ILE A 144 SER A 147 -1 O ILE A 146 N VAL A 98 SHEET 3 AB 3 VAL A 152 VAL A 154 -1 O LYS A 153 N MET A 145 SHEET 1 AC 2 ILE A 134 ILE A 135 0 SHEET 2 AC 2 ARG A 161 ALA A 162 -1 O ARG A 161 N ILE A 135 LINK OD1 ASN A 143 MG MG A1280 1555 1555 2.27 LINK OD1 ASP A 156 MG MG A1280 1555 1555 2.12 LINK O1A ACP A1279 MG MG A1280 1555 1555 2.02 LINK O1B ACP A1279 MG MG A1280 1555 1555 2.09 LINK O2B ACP A1279 MG MG A1281 1555 1555 1.94 LINK O1G ACP A1279 MG MG A1281 1555 1555 2.08 LINK MG MG A1280 O HOH A2079 1555 1555 2.13 LINK MG MG A1280 O HOH A2080 1555 1555 2.03 LINK MG MG A1281 O HOH A2054 1555 1555 1.92 LINK MG MG A1281 O HOH A2055 1555 1555 2.12 LINK MG MG A1281 O HOH A2081 1555 1555 2.06 LINK MG MG A1281 O HOH A2082 1555 1555 2.07 SITE 1 AC1 5 ASN A 143 ASP A 156 ACP A1279 HOH A2079 SITE 2 AC1 5 HOH A2080 SITE 1 AC2 6 LYS A 40 ACP A1279 HOH A2054 HOH A2055 SITE 2 AC2 6 HOH A2081 HOH A2082 SITE 1 AC3 24 GLY A 18 GLY A 20 GLY A 21 MET A 22 SITE 2 AC3 24 SER A 23 ALA A 38 LYS A 40 VAL A 72 SITE 3 AC3 24 GLU A 93 VAL A 95 THR A 99 ALA A 142 SITE 4 AC3 24 ASN A 143 ASP A 156 MG A1280 MG A1281 SITE 5 AC3 24 HOH A2054 HOH A2055 HOH A2079 HOH A2080 SITE 6 AC3 24 HOH A2081 HOH A2082 HOH A2083 HOH A2084 CRYST1 114.607 122.088 46.975 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008725 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021288 0.00000