HEADER CELL ADHESION 11-DEC-02 1O9A TITLE SOLUTION STRUCTURE OF THE COMPLEX OF 1F12F1 FROM FIBRONECTIN WITH B3 TITLE 2 FROM FNBB FROM S. DYSGALACTIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINAL F1 MODULE PAIR, RESIDUES 48-140; COMPND 5 SYNONYM: COLD-INSOLUBLE GLOBULIN, FN, CIG; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FIBRONECTIN BINDING PROTEIN; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: B3 FIBRONECTIN-BINDING REPEAT, RESIDUES 1031-1066; COMPND 11 SYNONYM: FNBB; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: PICHIA PASTORIS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4922; SOURCE 7 MOL_ID: 2; SOURCE 8 SYNTHETIC: YES; SOURCE 9 ORGANISM_SCIENTIFIC: STREPTOCOCCUS DYSGALACTIAE; SOURCE 10 ORGANISM_TAXID: 1334 KEYWDS CELL ADHESION-COMPLEX, HOST-PATHOGEN PROTEIN COMPLEX, CELL ADHESION, KEYWDS 2 FIBRONECTIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR U.SCHWARZ-LINEK,J.M.WERNER,A.R.PICKFORD,E.S.PILKA,S.GURUSIDDAPPA, AUTHOR 2 J.A.G.BRIGGS,M.HOOK,I.D.CAMPBELL,J.R.POTTS REVDAT 4 24-JAN-18 1O9A 1 JRNL REMARK REVDAT 3 15-APR-15 1O9A 1 JRNL REMARK VERSN REVDAT 2 24-FEB-09 1O9A 1 VERSN REVDAT 1 08-MAY-03 1O9A 0 JRNL AUTH U.SCHWARZ-LINEK,J.M.WERNER,A.R.PICKFORD,S.GURUSIDDAPPA, JRNL AUTH 2 J.H.KIM,E.S.PILKA,J.A.BRIGGS,T.S.GOUGH,M.HOOK,I.D.CAMPBELL, JRNL AUTH 3 J.R.POTTS JRNL TITL PATHOGENIC BACTERIA ATTACH TO HUMAN FIBRONECTIN THROUGH A JRNL TITL 2 TANDEM BETA-ZIPPER. JRNL REF NATURE V. 423 177 2003 JRNL REFN ISSN 0028-0836 JRNL PMID 12736686 JRNL DOI 10.1038/NATURE01589 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FURTHER REFINEMENT DETAILS CAN BE FOUND REMARK 3 IN THE JRNL CITATION ABOVE REMARK 4 REMARK 4 1O9A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 11-DEC-02. REMARK 100 THE DEPOSITION ID IS D_1290011850. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 5.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NOESY; TOCSY; COSY; 15N-NOESY REMARK 210 -HSQC; 15N-TOCSY-HSQC; HNCO; REMARK 210 CCCONH; 13C-NOESY-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : HOME-BUILT REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XPLOR 3.8 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : LEAST RESTRAINT VIOLATION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING NMR SPECTROSCOPY ON REMARK 210 UNLABELLED, 15N-, 2H,15N- AND 15N,13C-LABELLED 1F12F1 IN COMPLEX REMARK 210 WITH UNLABELLED B3 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 FIBRONECTINS BIND CELL SURFACES AND VARIOUS COMPOUNDS REMARK 400 INCLUDING COLLAGEN, FIBRIN, HEPARIN, DNA, AND ACTIN. REMARK 400 THEY ARE ALSO INVOLVED IN CELL ADHESION, CELL MOTILITY, REMARK 400 OPSONIZATION, WOUND HEALING, AND MAINTENANCE OF CELL SHAPE REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-15 REMARK 465 RES C SSSEQI REMARK 465 GLU B 1 REMARK 465 GLU B 2 REMARK 465 SER B 3 REMARK 465 LEU B 4 REMARK 465 PRO B 5 REMARK 465 THR B 6 REMARK 465 GLU B 7 REMARK 465 GLN B 8 REMARK 465 GLY B 9 REMARK 465 GLN B 10 REMARK 465 SER B 11 REMARK 465 GLY B 12 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 PRO A 19 102.28 -57.07 REMARK 500 1 ASN A 24 -1.81 -59.07 REMARK 500 1 LEU A 39 -36.95 72.02 REMARK 500 1 GLU A 61 -168.40 -75.35 REMARK 500 1 GLU A 63 64.40 -102.11 REMARK 500 1 LYS A 85 133.87 -174.21 REMARK 500 1 SER A 87 9.68 55.44 REMARK 500 1 MET A 88 -165.51 -124.34 REMARK 500 1 ARG A 99 -83.15 -145.24 REMARK 500 1 ALA A 107 68.44 -167.15 REMARK 500 1 GLU B 16 -62.13 -141.27 REMARK 500 1 VAL B 17 109.71 62.03 REMARK 500 1 ASP B 19 -163.28 55.99 REMARK 500 1 SER B 20 -72.81 -146.36 REMARK 500 1 LYS B 21 70.29 -150.26 REMARK 500 1 PRO B 22 93.08 -58.53 REMARK 500 1 LYS B 23 -174.91 58.32 REMARK 500 1 LEU B 24 120.48 -174.15 REMARK 500 1 ILE B 26 -168.69 -104.84 REMARK 500 1 HIS B 27 51.34 -164.12 REMARK 500 1 GLU B 35 84.18 56.69 REMARK 500 2 ASN A 24 86.04 -45.68 REMARK 500 2 LEU A 39 -4.91 60.17 REMARK 500 2 TYR A 48 -76.20 -105.14 REMARK 500 2 PRO A 60 -169.13 -72.00 REMARK 500 2 ALA A 62 -38.64 -175.44 REMARK 500 2 GLU A 64 -167.89 51.91 REMARK 500 2 THR A 65 167.84 53.19 REMARK 500 2 THR A 71 -9.75 -143.20 REMARK 500 2 VAL A 77 109.53 -58.86 REMARK 500 2 ASP A 86 -62.39 74.66 REMARK 500 2 SER A 87 4.42 -172.83 REMARK 500 2 MET A 88 -163.11 -125.48 REMARK 500 2 ARG A 99 49.91 -160.48 REMARK 500 2 ALA A 107 69.43 -169.12 REMARK 500 2 GLU B 16 63.28 -155.31 REMARK 500 2 ASP B 19 79.46 54.74 REMARK 500 2 PRO B 22 173.27 -59.25 REMARK 500 2 SER B 25 112.75 -162.23 REMARK 500 2 HIS B 27 51.36 -110.04 REMARK 500 2 ASN B 30 -49.75 -143.63 REMARK 500 2 TRP B 32 96.08 57.41 REMARK 500 2 GLU B 35 -165.50 57.41 REMARK 500 3 ASN A 24 86.29 -46.41 REMARK 500 3 LEU A 39 -33.71 72.40 REMARK 500 3 THR A 46 -164.46 -106.92 REMARK 500 3 TYR A 48 -31.49 -131.22 REMARK 500 3 GLU A 61 -174.05 -67.64 REMARK 500 3 ALA A 62 -47.96 -133.59 REMARK 500 3 GLU A 63 60.42 -104.29 REMARK 500 REMARK 500 THIS ENTRY HAS 312 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR PROVIDED. REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E88 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF 6F11F22F2, A COMPACT THREE-MODULE FRAGMENT OF REMARK 900 THE GELATIN-BINDING DOMAIN OF HUMAN FIBRONECTIN REMARK 900 RELATED ID: 1E8B RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF 6F11F22F2, A COMPACT THREE-MODULE FRAGMENT OF REMARK 900 THE GELATIN-BINDING DOMAIN OF HUMAN FIBRONECTIN REMARK 900 RELATED ID: 1FBR RELATED DB: PDB REMARK 900 FOURTH AND FIFTH FIBRONECTIN TYPE I MODULE PAIR REMARK 900 RELATED ID: 1FNA RELATED DB: PDB REMARK 900 FIBRONECTIN CELL-ADHESION MODULE TYPE III-10 REMARK 900 RELATED ID: 1FNF RELATED DB: PDB REMARK 900 FRAGMENT OF HUMAN FIBRONECTIN ENCOMPASSING TYPE-III REPEATS 7 REMARK 900 THROUGH 10 REMARK 900 RELATED ID: 1FNH RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF HEPARIN AND INTEGRIN BINDING SEGMENT OF HUMAN REMARK 900 FIBRONECTIN REMARK 900 RELATED ID: 1J8K RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE FIBRONECTIN EDA DOMAIN , NMR, 20STRUCTURES REMARK 900 RELATED ID: 1QGB RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF THE N-TERMINAL F1 MODULE PAIR FROM HUMAN REMARK 900 FIBRONECTIN REMARK 900 RELATED ID: 1QO6 RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF A PAIR OF MODULES FROM THE GELATIN-BINDING REMARK 900 DOMAIN OF FIBRONECTIN REMARK 900 RELATED ID: 1TTF RELATED DB: PDB REMARK 900 FIBRONECTIN (TENTH TYPE III MODULE) (NMR, 36 STRUCTURES) REMARK 900 RELATED ID: 1TTG RELATED DB: PDB REMARK 900 FIBRONECTIN (TENTH TYPE III MODULE) (NMR, RESTRAINED MINIMIZED REMARK 900 AVERAGE STRUCTURE) REMARK 900 RELATED ID: 2FN2 RELATED DB: PDB REMARK 900 SOLUTION NMR STRUCTURE OF THE GLYCOSYLATED SECOND TYPE TWO MODULE REMARK 900 OF FIBRONECTIN, 20 STRUCTURES DBREF 1O9A A 17 109 UNP P02751 FINC_HUMAN 48 140 DBREF 1O9A B 1 36 UNP Q53971 Q53971 1031 1066 SEQRES 1 A 93 SER LYS PRO GLY CYS TYR ASP ASN GLY LYS HIS TYR GLN SEQRES 2 A 93 ILE ASN GLN GLN TRP GLU ARG THR TYR LEU GLY ASN ALA SEQRES 3 A 93 LEU VAL CYS THR CYS TYR GLY GLY SER ARG GLY PHE ASN SEQRES 4 A 93 CYS GLU SER LYS PRO GLU ALA GLU GLU THR CYS PHE ASP SEQRES 5 A 93 LYS TYR THR GLY ASN THR TYR ARG VAL GLY ASP THR TYR SEQRES 6 A 93 GLU ARG PRO LYS ASP SER MET ILE TRP ASP CYS THR CYS SEQRES 7 A 93 ILE GLY ALA GLY ARG GLY ARG ILE SER CYS THR ILE ALA SEQRES 8 A 93 ASN ARG SEQRES 1 B 36 GLU GLU SER LEU PRO THR GLU GLN GLY GLN SER GLY SER SEQRES 2 B 36 THR THR GLU VAL GLU ASP SER LYS PRO LYS LEU SER ILE SEQRES 3 B 36 HIS PHE ASP ASN GLU TRP PRO LYS GLU ASP SHEET 1 AA 2 CYS A 21 ASP A 23 0 SHEET 2 AA 2 LYS A 26 TYR A 28 -1 O LYS A 26 N ASP A 23 SHEET 1 AB 4 GLN A 33 THR A 37 0 SHEET 2 AB 4 ALA A 42 CYS A 47 -1 O LEU A 43 N ARG A 36 SHEET 3 AB 4 PHE A 54 SER A 58 -1 O ASN A 55 N THR A 46 SHEET 4 AB 4 LEU B 24 HIS B 27 -1 O LEU B 24 N SER A 58 SHEET 1 AC 2 CYS A 66 ASP A 68 0 SHEET 2 AC 2 ASN A 73 TYR A 75 -1 O ASN A 73 N ASP A 68 SHEET 1 AD 4 THR A 80 PRO A 84 0 SHEET 2 AD 4 TRP A 90 ILE A 95 -1 O TRP A 90 N ARG A 83 SHEET 3 AD 4 ILE A 102 ILE A 106 -1 O SER A 103 N THR A 93 SHEET 4 AD 4 THR B 14 VAL B 17 -1 O THR B 14 N ILE A 106 SSBOND 1 CYS A 21 CYS A 47 1555 1555 2.03 SSBOND 2 CYS A 45 CYS A 56 1555 1555 2.03 SSBOND 3 CYS A 66 CYS A 94 1555 1555 2.03 SSBOND 4 CYS A 92 CYS A 104 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1