HEADER RNA BINDING 02-JAN-03 1OA8 TITLE AXH DOMAIN OF HUMAN SPINOCEREBELLAR ATAXIN-1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: ATAXIN-1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: AXH DOMAIN, RESIDUES 562-694; COMPND 5 SYNONYM: SPINOCEREBELLAR ATAXIA TYPE 1 PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_VARIANT: C41; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PRSETA KEYWDS RNA BINDING, HIGH MOBILITY GROUP HOMOLOGY, HMG, RNA-BINDING, KEYWDS 2 DIMERIZATION EXPDTA X-RAY DIFFRACTION AUTHOR M.D.ALLEN,Y.W.CHEN,M.BYCROFT REVDAT 7 08-MAY-24 1OA8 1 LINK REVDAT 6 09-OCT-19 1OA8 1 REMARK REVDAT 5 06-FEB-19 1OA8 1 JRNL REMARK REVDAT 4 24-JAN-18 1OA8 1 SOURCE REVDAT 3 24-FEB-09 1OA8 1 VERSN REVDAT 2 29-JAN-04 1OA8 1 JRNL REVDAT 1 06-NOV-03 1OA8 0 JRNL AUTH Y.W.CHEN,M.D.ALLEN,D.B.VEPRINTSEV,J.LOWE,M.BYCROFT JRNL TITL THE STRUCTURE OF THE AXH DOMAIN OF SPINOCEREBELLAR ATAXIN-1. JRNL REF J. BIOL. CHEM. V. 279 3758 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 14583607 JRNL DOI 10.1074/JBC.M309817200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH C.DE CHIARA,C.GIANNINI,S.ADINOLFI,J.DE BOER,S.GUIDA,A.RAMOS, REMARK 1 AUTH 2 C.JODICE,D.KIOUSSIS,A.PASTORE REMARK 1 TITL THE AXH MODULE: AN INDEPENDENTLY FOLDED DOMAIN COMMON TO REMARK 1 TITL 2 ATAXIN-1 AND HBP1. REMARK 1 REF FEBS LETT. V. 551 107 2003 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 12965213 REMARK 1 DOI 10.1016/S0014-5793(03)00818-4 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.27 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 58574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.252 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3125 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4211 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 224 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3934 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 378 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.39000 REMARK 3 B22 (A**2) : -1.09000 REMARK 3 B33 (A**2) : -0.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.118 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.093 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.883 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4018 ; 0.020 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5458 ; 1.780 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 514 ; 6.668 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 628 ; 0.123 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3020 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1747 ; 0.225 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 347 ; 0.166 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 11 ; 0.176 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.233 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 27 ; 0.239 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2585 ; 1.292 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4201 ; 2.253 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1433 ; 3.333 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1257 ; 5.640 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DISORDERED REGION IN B CHAIN (RESIDUES REMARK 3 39 - 51) MODELED BUILT FROM SE-METHONINE DATA. REMARK 4 REMARK 4 1OA8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1290011915. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.960,0.97916,0.97966 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 62044 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 70.710 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 5.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.40 REMARK 200 R MERGE FOR SHELL (I) : 0.41600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 0.1M REMARK 280 TRIS/HCL, PH 7.0, 0.2M AMMONIUM SULPHATE, 5 MM DTT, 15% PEG 4000, REMARK 280 20% GLYCEROL, AT 290K, PH 7.00, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.39150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.89050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.22050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.89050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.39150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.22050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 ATAXIN-1 BINDS TO RNA IN VITRO. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 690 REMARK 465 LEU A 691 REMARK 465 LYS A 692 REMARK 465 ASN A 693 REMARK 465 GLY A 694 REMARK 465 ASN B 690 REMARK 465 LEU B 691 REMARK 465 LYS B 692 REMARK 465 ASN B 693 REMARK 465 GLY B 694 REMARK 465 LEU C 691 REMARK 465 LYS C 692 REMARK 465 ASN C 693 REMARK 465 GLY C 694 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 689 C O CB CG CD CE NZ REMARK 470 ASN C 690 O CB CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 2017 O HOH D 2021 1.99 REMARK 500 O HOH A 2065 O HOH A 2091 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2091 O HOH D 2031 1545 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 598 CB - CG - OD2 ANGL. DEV. = 8.7 DEGREES REMARK 500 ASP D 598 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 584 2.35 -56.31 REMARK 500 GLN A 656 -56.30 -132.42 REMARK 500 LEU B 609 106.92 -42.33 REMARK 500 GLN B 656 -39.11 -147.01 REMARK 500 CYS B 662 81.20 -152.19 REMARK 500 ARG C 638 67.59 27.04 REMARK 500 GLN C 656 -36.65 -142.47 REMARK 500 ASN D 585 0.48 -61.15 REMARK 500 GLN D 656 -33.48 -136.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH D2098 DISTANCE = 5.82 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A1690 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 603 O REMARK 620 2 SER A 606 O 80.6 REMARK 620 3 LEU A 609 O 83.3 93.6 REMARK 620 4 HOH A2096 O 104.9 164.5 101.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA D1695 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A2066 O REMARK 620 2 ALA D 603 O 91.0 REMARK 620 3 SER D 606 O 168.8 94.2 REMARK 620 4 LEU D 609 O 95.6 104.7 92.6 REMARK 620 5 HOH D2115 O 81.5 108.6 87.5 146.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA C1691 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B2049 O REMARK 620 2 ALA C 603 O 91.9 REMARK 620 3 SER C 606 O 172.6 90.1 REMARK 620 4 LEU C 609 O 90.2 101.8 96.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A1690 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA C1691 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D1695 DBREF 1OA8 A 562 562 PDB 1OA8 1OA8 562 562 DBREF 1OA8 A 563 694 UNP P54253 ATX1_HUMAN 563 694 DBREF 1OA8 B 562 562 PDB 1OA8 1OA8 562 562 DBREF 1OA8 B 563 694 UNP P54253 ATX1_HUMAN 563 694 DBREF 1OA8 C 562 562 PDB 1OA8 1OA8 562 562 DBREF 1OA8 C 563 694 UNP P54253 ATX1_HUMAN 563 694 DBREF 1OA8 D 562 562 PDB 1OA8 1OA8 562 562 DBREF 1OA8 D 563 694 UNP P54253 ATX1_HUMAN 563 694 SEQRES 1 A 133 GLY SER PRO ALA ALA ALA PRO PRO THR LEU PRO PRO TYR SEQRES 2 A 133 PHE MET LYS GLY SER ILE ILE GLN LEU ALA ASN GLY GLU SEQRES 3 A 133 LEU LYS LYS VAL GLU ASP LEU LYS THR GLU ASP PHE ILE SEQRES 4 A 133 GLN SER ALA GLU ILE SER ASN ASP LEU LYS ILE ASP SER SEQRES 5 A 133 SER THR VAL GLU ARG ILE GLU ASP SER HIS SER PRO GLY SEQRES 6 A 133 VAL ALA VAL ILE GLN PHE ALA VAL GLY GLU HIS ARG ALA SEQRES 7 A 133 GLN VAL SER VAL GLU VAL LEU VAL GLU TYR PRO PHE PHE SEQRES 8 A 133 VAL PHE GLY GLN GLY TRP SER SER CYS CYS PRO GLU ARG SEQRES 9 A 133 THR SER GLN LEU PHE ASP LEU PRO CYS SER LYS LEU SER SEQRES 10 A 133 VAL GLY ASP VAL CYS ILE SER LEU THR LEU LYS ASN LEU SEQRES 11 A 133 LYS ASN GLY SEQRES 1 B 133 GLY SER PRO ALA ALA ALA PRO PRO THR LEU PRO PRO TYR SEQRES 2 B 133 PHE MET LYS GLY SER ILE ILE GLN LEU ALA ASN GLY GLU SEQRES 3 B 133 LEU LYS LYS VAL GLU ASP LEU LYS THR GLU ASP PHE ILE SEQRES 4 B 133 GLN SER ALA GLU ILE SER ASN ASP LEU LYS ILE ASP SER SEQRES 5 B 133 SER THR VAL GLU ARG ILE GLU ASP SER HIS SER PRO GLY SEQRES 6 B 133 VAL ALA VAL ILE GLN PHE ALA VAL GLY GLU HIS ARG ALA SEQRES 7 B 133 GLN VAL SER VAL GLU VAL LEU VAL GLU TYR PRO PHE PHE SEQRES 8 B 133 VAL PHE GLY GLN GLY TRP SER SER CYS CYS PRO GLU ARG SEQRES 9 B 133 THR SER GLN LEU PHE ASP LEU PRO CYS SER LYS LEU SER SEQRES 10 B 133 VAL GLY ASP VAL CYS ILE SER LEU THR LEU LYS ASN LEU SEQRES 11 B 133 LYS ASN GLY SEQRES 1 C 133 GLY SER PRO ALA ALA ALA PRO PRO THR LEU PRO PRO TYR SEQRES 2 C 133 PHE MET LYS GLY SER ILE ILE GLN LEU ALA ASN GLY GLU SEQRES 3 C 133 LEU LYS LYS VAL GLU ASP LEU LYS THR GLU ASP PHE ILE SEQRES 4 C 133 GLN SER ALA GLU ILE SER ASN ASP LEU LYS ILE ASP SER SEQRES 5 C 133 SER THR VAL GLU ARG ILE GLU ASP SER HIS SER PRO GLY SEQRES 6 C 133 VAL ALA VAL ILE GLN PHE ALA VAL GLY GLU HIS ARG ALA SEQRES 7 C 133 GLN VAL SER VAL GLU VAL LEU VAL GLU TYR PRO PHE PHE SEQRES 8 C 133 VAL PHE GLY GLN GLY TRP SER SER CYS CYS PRO GLU ARG SEQRES 9 C 133 THR SER GLN LEU PHE ASP LEU PRO CYS SER LYS LEU SER SEQRES 10 C 133 VAL GLY ASP VAL CYS ILE SER LEU THR LEU LYS ASN LEU SEQRES 11 C 133 LYS ASN GLY SEQRES 1 D 133 GLY SER PRO ALA ALA ALA PRO PRO THR LEU PRO PRO TYR SEQRES 2 D 133 PHE MET LYS GLY SER ILE ILE GLN LEU ALA ASN GLY GLU SEQRES 3 D 133 LEU LYS LYS VAL GLU ASP LEU LYS THR GLU ASP PHE ILE SEQRES 4 D 133 GLN SER ALA GLU ILE SER ASN ASP LEU LYS ILE ASP SER SEQRES 5 D 133 SER THR VAL GLU ARG ILE GLU ASP SER HIS SER PRO GLY SEQRES 6 D 133 VAL ALA VAL ILE GLN PHE ALA VAL GLY GLU HIS ARG ALA SEQRES 7 D 133 GLN VAL SER VAL GLU VAL LEU VAL GLU TYR PRO PHE PHE SEQRES 8 D 133 VAL PHE GLY GLN GLY TRP SER SER CYS CYS PRO GLU ARG SEQRES 9 D 133 THR SER GLN LEU PHE ASP LEU PRO CYS SER LYS LEU SER SEQRES 10 D 133 VAL GLY ASP VAL CYS ILE SER LEU THR LEU LYS ASN LEU SEQRES 11 D 133 LYS ASN GLY HET NA A1690 1 HET NA C1691 1 HET NA D1695 1 HETNAM NA SODIUM ION FORMUL 5 NA 3(NA 1+) FORMUL 8 HOH *378(H2 O) HELIX 1 1 PRO A 572 MET A 576 5 5 HELIX 2 2 GLU A 592 LEU A 594 5 3 HELIX 3 3 LYS A 595 SER A 606 1 12 HELIX 4 4 CYS A 662 ASP A 671 1 10 HELIX 5 5 ALA B 567 LEU B 571 5 5 HELIX 6 6 PRO B 573 LYS B 577 5 5 HELIX 7 7 GLU B 592 LEU B 594 5 3 HELIX 8 8 LYS B 595 PHE B 599 5 5 HELIX 9 9 CYS B 662 ASP B 671 1 10 HELIX 10 10 PRO C 572 MET C 576 5 5 HELIX 11 11 GLU C 592 LEU C 594 5 3 HELIX 12 12 LYS C 595 SER C 606 1 12 HELIX 13 13 GLU C 636 ARG C 638 5 3 HELIX 14 14 CYS C 662 ASP C 671 1 10 HELIX 15 15 SER D 563 ALA D 567 5 5 HELIX 16 16 PRO D 573 LYS D 577 5 5 HELIX 17 17 GLU D 592 LEU D 594 5 3 HELIX 18 18 LYS D 595 SER D 606 1 12 HELIX 19 19 CYS D 662 ASP D 671 1 10 SHEET 1 AA 5 ALA A 565 ALA A 566 0 SHEET 2 AA 5 ALA A 639 LEU A 646 1 O SER A 642 N ALA A 565 SHEET 3 AA 5 VAL A 627 VAL A 634 -1 O ALA A 628 N VAL A 645 SHEET 4 AA 5 LEU A 609 ASP A 621 -1 O THR A 615 N ALA A 633 SHEET 5 AA 5 VAL A 682 LEU A 688 -1 O CYS A 683 N SER A 614 SHEET 1 AB 2 ILE A 580 GLN A 582 0 SHEET 2 AB 2 LEU A 588 LYS A 590 -1 O LYS A 589 N ILE A 581 SHEET 1 AC 3 PHE A 651 VAL A 653 0 SHEET 2 AC 3 GLY A 657 SER A 660 -1 O GLY A 657 N VAL A 653 SHEET 3 AC 3 SER A 675 LYS A 676 1 O SER A 675 N SER A 660 SHEET 1 BA 2 ILE B 580 GLN B 582 0 SHEET 2 BA 2 LEU B 588 LYS B 590 -1 O LYS B 589 N ILE B 581 SHEET 1 BB 7 ALA B 639 LEU B 646 0 SHEET 2 BB 7 VAL B 627 VAL B 634 -1 O ALA B 628 N VAL B 645 SHEET 3 BB 7 SER B 613 ASP B 621 -1 O THR B 615 N ALA B 633 SHEET 4 BB 7 VAL B 682 ILE B 684 -1 O CYS B 683 N SER B 614 SHEET 5 BB 7 PHE B 651 VAL B 653 -1 O PHE B 652 N ILE B 684 SHEET 6 BB 7 GLY B 657 SER B 660 -1 O GLY B 657 N VAL B 653 SHEET 7 BB 7 SER B 675 LYS B 676 1 O SER B 675 N SER B 660 SHEET 1 CA 5 ALA C 565 ALA C 566 0 SHEET 2 CA 5 ALA C 639 LEU C 646 1 O SER C 642 N ALA C 565 SHEET 3 CA 5 VAL C 627 VAL C 634 -1 O ALA C 628 N VAL C 645 SHEET 4 CA 5 LEU C 609 ASP C 621 -1 O THR C 615 N ALA C 633 SHEET 5 CA 5 VAL C 682 LEU C 688 -1 O CYS C 683 N SER C 614 SHEET 1 CB 2 ILE C 580 GLN C 582 0 SHEET 2 CB 2 LEU C 588 LYS C 590 -1 O LYS C 589 N ILE C 581 SHEET 1 CC 3 PHE C 651 VAL C 653 0 SHEET 2 CC 3 GLY C 657 SER C 660 -1 O GLY C 657 N VAL C 653 SHEET 3 CC 3 SER C 675 LYS C 676 1 O SER C 675 N SER C 660 SHEET 1 DA 2 ILE D 580 GLN D 582 0 SHEET 2 DA 2 LEU D 588 LYS D 590 -1 O LYS D 589 N ILE D 581 SHEET 1 DB 4 ALA D 639 LEU D 646 0 SHEET 2 DB 4 VAL D 627 VAL D 634 -1 O ALA D 628 N VAL D 645 SHEET 3 DB 4 LEU D 609 ASP D 621 -1 O THR D 615 N ALA D 633 SHEET 4 DB 4 VAL D 682 LEU D 688 -1 O CYS D 683 N SER D 614 SHEET 1 DC 3 PHE D 651 VAL D 653 0 SHEET 2 DC 3 GLY D 657 SER D 660 -1 O GLY D 657 N VAL D 653 SHEET 3 DC 3 SER D 675 LYS D 676 1 O SER D 675 N SER D 660 LINK O ALA A 603 NA NA A1690 1555 1555 2.37 LINK O SER A 606 NA NA A1690 1555 1555 2.56 LINK O LEU A 609 NA NA A1690 1555 1555 2.60 LINK NA NA A1690 O HOH A2096 1555 1555 2.11 LINK O HOH A2066 NA NA D1695 1565 1555 2.25 LINK O HOH B2049 NA NA C1691 1555 1555 2.38 LINK O ALA C 603 NA NA C1691 1555 1555 2.08 LINK O SER C 606 NA NA C1691 1555 1555 2.27 LINK O LEU C 609 NA NA C1691 1555 1555 2.26 LINK O ALA D 603 NA NA D1695 1555 1555 2.26 LINK O SER D 606 NA NA D1695 1555 1555 2.33 LINK O LEU D 609 NA NA D1695 1555 1555 2.24 LINK NA NA D1695 O HOH D2115 1555 1555 2.34 SITE 1 AC1 5 ALA A 603 SER A 606 LEU A 609 LYS A 689 SITE 2 AC1 5 HOH A2096 SITE 1 AC2 5 HOH B2049 HOH B2056 ALA C 603 SER C 606 SITE 2 AC2 5 LEU C 609 SITE 1 AC3 6 HOH A2066 ALA D 603 SER D 606 LEU D 609 SITE 2 AC3 6 LYS D 689 HOH D2115 CRYST1 48.783 82.441 137.781 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020499 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012130 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007258 0.00000 MTRIX1 1 -0.669210 -0.054970 0.741030 -27.01102 1 MTRIX2 1 0.091550 -0.995760 0.008820 -63.26282 1 MTRIX3 1 0.737410 0.073740 0.671410 14.60991 1 MTRIX1 2 0.876220 -0.481880 -0.004650 -15.61538 1 MTRIX2 2 0.470700 0.857870 -0.206140 43.61203 1 MTRIX3 2 0.103320 0.178440 0.978510 5.62488 1 MTRIX1 3 -0.665600 0.385440 0.639070 -11.01075 1 MTRIX2 3 -0.352250 -0.917180 0.186300 -27.62694 1 MTRIX3 3 0.657950 -0.101110 0.746240 5.62451 1