HEADER OXIDOREDUCTASE(CYTOCHROME) 09-JAN-03 1OAE TITLE CRYSTAL STRUCTURE OF THE REDUCED FORM OF CYTOCHROME C" FROM TITLE 2 METHYLOPHILUS METHYLOTROPHUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME C"; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOPHILUS METHYLOTROPHUS; SOURCE 3 ORGANISM_TAXID: 17 KEYWDS OXIDOREDUCTASE(CYTOCHROME), CYTOCHROME C, OXIDOREDUCTASE, ELECTRON KEYWDS 2 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR F.J.ENGUITA,R.GRENHA,H.SANTOS,M.A.CARRONDO REVDAT 4 24-JUL-19 1OAE 1 REMARK LINK REVDAT 3 22-OCT-14 1OAE 1 JRNL REMARK VERSN REVDAT 2 24-FEB-09 1OAE 1 VERSN REVDAT 1 26-MAR-04 1OAE 0 JRNL AUTH F.J.ENGUITA,E.POHL,D.L.TURNER,H.SANTOS,M.A.CARRONDO JRNL TITL STRUCTURAL EVIDENCE FOR A PROTON TRANSFER PATHWAY COUPLED JRNL TITL 2 WITH HAEM REDUCTION OF CYTOCHROME C" FROM METHYLOPHILUS JRNL TITL 3 METHYLOTROPHUS. JRNL REF J.BIOL.INORG.CHEM. V. 11 189 2006 JRNL REFN ISSN 0949-8257 JRNL PMID 16341897 JRNL DOI 10.1007/S00775-005-0065-6 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 23808 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1283 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1506 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1920 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 146 REMARK 3 SOLVENT ATOMS : 270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.29000 REMARK 3 B22 (A**2) : 0.53000 REMARK 3 B33 (A**2) : -0.24000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.150 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.096 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.350 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2144 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): 2930 ; 1.852 ; 2.101 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 246 ; 5.813 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 305 ; 0.136 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1587 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1125 ; 0.286 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 239 ; 0.204 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.165 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1252 ; 1.120 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2047 ; 2.026 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 892 ; 3.455 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 883 ; 5.503 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OAE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 09-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1290011940. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-02 REMARK 200 TEMPERATURE (KELVIN) : 110.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.811 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25348 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.940 REMARK 200 RESOLUTION RANGE LOW (A) : 46.860 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.94 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.8 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.48000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: OXIDIZED STRUCTURE OF CYTOCHROME C" REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.34400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.92100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.18100 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.92100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.34400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.18100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OG SER B 43 O HOH B 2060 2.10 REMARK 500 O HOH B 2032 O HOH B 2080 2.14 REMARK 500 O3 GOL A 1126 O HOH A 2115 2.14 REMARK 500 O HOH A 2069 O HOH A 2071 2.15 REMARK 500 OD2 ASP B 98 O HOH B 2106 2.18 REMARK 500 O HOH A 2018 O HOH A 2099 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 90 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP B 30 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 54 173.73 64.61 REMARK 500 THR B 54 171.24 64.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR B 123 LYS B 124 -148.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC A1125 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 53 NE2 REMARK 620 2 HEC A1125 NA 91.6 REMARK 620 3 HEC A1125 NB 92.9 88.5 REMARK 620 4 HEC A1125 NC 88.1 178.8 90.3 REMARK 620 5 HEC A1125 ND 86.6 91.7 179.5 89.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEC B1125 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 53 NE2 REMARK 620 2 HEC B1125 NA 93.3 REMARK 620 3 HEC B1125 NB 89.7 88.4 REMARK 620 4 HEC B1125 NC 86.3 179.3 92.2 REMARK 620 5 HEC B1125 ND 91.6 86.9 175.2 92.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1131 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1129 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 1130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC A 1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEC B 1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1127 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1128 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1127 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E8E RELATED DB: PDB REMARK 900 SOLUTION STRUCTURE OF METHYLOPHILUS METHYLOTROPHUS CYTOCHROME C'': REMARK 900 INSIGHTS INTO THE STRUCTURAL BASIS OF HAEM-LIGAND DETACHMENT REMARK 900 RELATED ID: 1GU2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF OXIDIZED CYTOCHROME C" FROM METHYLOPHILUS REMARK 900 METHYLOTROPHUS DBREF 1OAE A 1 124 UNP Q9RQB9 Q9RQB9 21 144 DBREF 1OAE B 1 124 UNP Q9RQB9 Q9RQB9 21 144 SEQRES 1 A 124 ASP VAL THR ASN ALA GLU LYS LEU VAL TYR LYS TYR THR SEQRES 2 A 124 ASN ILE ALA HIS SER ALA ASN PRO MET TYR GLU ALA PRO SEQRES 3 A 124 SER ILE THR ASP GLY LYS ILE PHE PHE ASN ARG LYS PHE SEQRES 4 A 124 LYS THR PRO SER GLY LYS GLU ALA ALA CYS ALA SER CYS SEQRES 5 A 124 HIS THR ASN ASN PRO ALA ASN VAL GLY LYS ASN ILE VAL SEQRES 6 A 124 THR GLY LYS GLU ILE PRO PRO LEU ALA PRO ARG VAL ASN SEQRES 7 A 124 THR LYS ARG PHE THR ASP ILE ASP LYS VAL GLU ASP GLU SEQRES 8 A 124 PHE THR LYS HIS CYS ASN ASP ILE LEU GLY ALA ASP CYS SEQRES 9 A 124 SER PRO SER GLU LYS ALA ASN PHE ILE ALA TYR LEU LEU SEQRES 10 A 124 THR GLU THR LYS PRO THR LYS SEQRES 1 B 124 ASP VAL THR ASN ALA GLU LYS LEU VAL TYR LYS TYR THR SEQRES 2 B 124 ASN ILE ALA HIS SER ALA ASN PRO MET TYR GLU ALA PRO SEQRES 3 B 124 SER ILE THR ASP GLY LYS ILE PHE PHE ASN ARG LYS PHE SEQRES 4 B 124 LYS THR PRO SER GLY LYS GLU ALA ALA CYS ALA SER CYS SEQRES 5 B 124 HIS THR ASN ASN PRO ALA ASN VAL GLY LYS ASN ILE VAL SEQRES 6 B 124 THR GLY LYS GLU ILE PRO PRO LEU ALA PRO ARG VAL ASN SEQRES 7 B 124 THR LYS ARG PHE THR ASP ILE ASP LYS VAL GLU ASP GLU SEQRES 8 B 124 PHE THR LYS HIS CYS ASN ASP ILE LEU GLY ALA ASP CYS SEQRES 9 B 124 SER PRO SER GLU LYS ALA ASN PHE ILE ALA TYR LEU LEU SEQRES 10 B 124 THR GLU THR LYS PRO THR LYS HET HEC A1125 43 HET GOL A1126 6 HET GOL A1127 6 HET GOL A1128 6 HET SO4 A1129 5 HET SO4 A1130 5 HET SO4 A1131 5 HET HEC B1125 43 HET GOL B1126 6 HET GOL B1127 6 HET SO4 B1128 5 HET SO4 B1129 5 HET SO4 B1130 5 HETNAM HEC HEME C HETNAM GOL GLYCEROL HETNAM SO4 SULFATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 HEC 2(C34 H34 FE N4 O4) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 7 SO4 6(O4 S 2-) FORMUL 16 HOH *270(H2 O) HELIX 1 1 ASP A 1 ASN A 20 1 20 HELIX 2 2 SER A 27 ARG A 37 1 11 HELIX 3 3 ALA A 48 THR A 54 1 7 HELIX 4 4 ASP A 84 GLY A 101 1 18 HELIX 5 5 SER A 105 LEU A 117 1 13 HELIX 6 6 ASP B 1 ASN B 20 1 20 HELIX 7 7 SER B 27 ARG B 37 1 11 HELIX 8 8 ALA B 48 THR B 54 1 7 HELIX 9 9 ASP B 84 GLY B 101 1 18 HELIX 10 10 SER B 105 LEU B 117 1 13 SHEET 1 AA 2 PHE A 39 LYS A 40 0 SHEET 2 AA 2 GLU A 46 ALA A 47 -1 O ALA A 47 N PHE A 39 SHEET 1 AB 2 GLY A 61 LYS A 62 0 SHEET 2 AB 2 GLU A 69 ILE A 70 -1 O ILE A 70 N GLY A 61 SHEET 1 BA 2 PHE B 39 LYS B 40 0 SHEET 2 BA 2 GLU B 46 ALA B 47 -1 O ALA B 47 N PHE B 39 SHEET 1 BB 2 GLY B 61 LYS B 62 0 SHEET 2 BB 2 GLU B 69 ILE B 70 -1 O ILE B 70 N GLY B 61 SSBOND 1 CYS A 96 CYS A 104 1555 1555 2.60 SSBOND 2 CYS B 96 CYS B 104 1555 1555 2.87 LINK SG CYS A 49 CAB HEC A1125 1555 1555 1.86 LINK SG CYS A 52 CAC HEC A1125 1555 1555 2.08 LINK FE HEC A1125 NE2 HIS A 53 1555 1555 2.06 LINK SG CYS B 49 CAB HEC B1125 1555 1555 1.82 LINK SG CYS B 52 CAC HEC B1125 1555 1555 2.08 LINK NE2 HIS B 53 FE HEC B1125 1555 1555 2.04 SITE 1 AC1 6 LYS A 7 HOH A2118 HOH A2120 HOH A2121 SITE 2 AC1 6 ALA B 102 ASP B 103 SITE 1 AC2 9 LYS A 80 ARG A 81 PHE A 82 VAL A 88 SITE 2 AC2 9 GLU A 91 HEC A1125 HOH A2122 HOH A2123 SITE 3 AC2 9 HOH A2124 SITE 1 AC3 5 ASN A 59 VAL A 60 HOH A2125 HOH A2126 SITE 2 AC3 5 HOH A2127 SITE 1 AC4 9 ASN A 97 ALA A 102 ASP A 103 LYS B 7 SITE 2 AC4 9 LYS B 45 HOH B2096 HOH B2137 HOH B2138 SITE 3 AC4 9 HOH B2139 SITE 1 AC5 7 ARG B 81 PHE B 82 LYS B 87 VAL B 88 SITE 2 AC5 7 GLU B 91 HEC B1125 HOH B2140 SITE 1 AC6 5 SER B 27 ILE B 28 THR B 29 HOH B2142 SITE 2 AC6 5 HOH B2143 SITE 1 AC7 16 ALA A 48 CYS A 49 CYS A 52 HIS A 53 SITE 2 AC7 16 ASN A 63 ILE A 70 PRO A 71 LEU A 73 SITE 3 AC7 16 ARG A 81 GLU A 91 PHE A 92 HIS A 95 SITE 4 AC7 16 ILE A 99 SO4 A1130 HOH A2112 HOH A2113 SITE 1 AC8 17 PHE B 34 CYS B 49 CYS B 52 HIS B 53 SITE 2 AC8 17 ASN B 63 ILE B 70 PRO B 71 LEU B 73 SITE 3 AC8 17 ARG B 81 GLU B 91 PHE B 92 HIS B 95 SITE 4 AC8 17 ILE B 99 SO4 B1129 HOH B2132 HOH B2133 SITE 5 AC8 17 HOH B2134 SITE 1 AC9 7 PRO A 26 SER A 27 ILE A 28 THR A 29 SITE 2 AC9 7 HOH A2114 HOH A2115 PRO B 21 SITE 1 BC1 5 ARG A 37 GLU A 108 HOH A2101 HOH A2117 SITE 2 BC1 5 PRO B 42 SITE 1 BC2 4 ILE A 33 ARG A 37 HOH A2044 HOH A2050 SITE 1 BC3 7 ASN A 97 HOH A2090 ILE B 64 VAL B 65 SITE 2 BC3 7 ILE B 99 HOH B2108 HOH B2135 SITE 1 BC4 8 VAL A 65 ILE A 99 ASN B 97 ASP B 98 SITE 2 BC4 8 GLY B 101 HOH B2104 HOH B2112 HOH B2136 CRYST1 58.688 74.362 77.842 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017039 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013448 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012846 0.00000