data_1OB7 # _entry.id 1OB7 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.308 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1OB7 PDBE EBI-12027 WWPDB D_1290012027 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1M24 unspecified 'CRYSTAL STRUCTURE OF THE PEPTAIBOL TRICHOTOXIN_A50E' PDB 1R9U unspecified 'SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB IN METHANOL' PDB 1DLZ unspecified 'SOLUTION STRUCTURE OF THE PEPTIABOL ZERVAMICIN IIB' PDB 1IH9 unspecified 'SOLUTION STRUCTURE OF THE PEPTAIBOL ZERVAMICIN IIB BOUND TO DPC MICELLES' PDB 1GQ0 unspecified 'SOLUTION STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I' PDB 1JOH unspecified 'CRYSTAL STRUCTURE OF THE PEPTAIBOL ANTIAMOEBIN I' PDB 1AMT unspecified 'CRYSTAL STRUCTURE OF THE PEPTAIBOL ALAMETHICIN' PDB 1EE7 unspecified 'SOLUTION STRUCTURE OF THE PEPTAIBOL CHRYSOSPERMIN C BOUND TO DPC MICELLES' PDB 1OB6 unspecified 'CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL B' PDB 1OB4 unspecified 'CRYSTAL STRUCTURE OF THE PEPTAIBOL CEPHAIBOL A' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OB7 _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-01-24 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal _audit_author.identifier_ORCID 'Bunkoczi, G.' 1 ? 'Schiell, M.' 2 ? 'Vertesy, L.' 3 ? 'Sheldrick, G.M.' 4 ? # _citation.id primary _citation.title 'Crystal Structures of Cephaibols' _citation.journal_abbrev J.Pept.Sci. _citation.journal_volume 9 _citation.page_first 745 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM JPSIEI _citation.country UK _citation.journal_id_ISSN 1075-2617 _citation.journal_id_CSD 1225 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14658793 _citation.pdbx_database_id_DOI 10.1002/PSC.496 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Bunkoczi, G.' 1 ? primary 'Schiell, M.' 2 ? primary 'Vertesy, L.' 3 ? primary 'Sheldrick, G.M.' 4 ? # _cell.entry_id 1OB7 _cell.length_a 9.002 _cell.length_b 28.619 _cell.length_c 41.100 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OB7 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'CEPHAIBOL C' 1654.991 1 ? ? ? ? 2 non-polymer syn ETHANOL 46.068 2 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 11 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(ACE)F(AIB)(AIB)(AIB)(AIB)GL(DIV)(AIB)(HYP)Q(DIV)(HYP)(AIB)P(PHL)' _entity_poly.pdbx_seq_one_letter_code_can XFAAAAGLVAPQVPAPF _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ACE n 1 2 PHE n 1 3 AIB n 1 4 AIB n 1 5 AIB n 1 6 AIB n 1 7 GLY n 1 8 LEU n 1 9 DIV n 1 10 AIB n 1 11 HYP n 1 12 GLN n 1 13 DIV y 1 13 AIB y 1 14 HYP n 1 15 AIB n 1 16 PRO n 1 17 PHL n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'ACREMONIUM TUBAKII' _entity_src_nat.pdbx_ncbi_taxonomy_id 146077 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name NOR _struct_ref.db_code NOR00972 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession NOR00972 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1OB7 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 17 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession NOR00972 _struct_ref_seq.db_align_beg 0 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 16 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 16 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1OB7 _struct_ref_seq_dif.mon_id DIV _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 13 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name NOR _struct_ref_seq_dif.pdbx_seq_db_accession_code NO00972 _struct_ref_seq_dif.db_mon_id AIB _struct_ref_seq_dif.pdbx_seq_db_seq_num 12 _struct_ref_seq_dif.details microheterogeneity _struct_ref_seq_dif.pdbx_auth_seq_num 12 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACE non-polymer . 'ACETYL GROUP' ? 'C2 H4 O' 44.053 AIB 'L-peptide linking' n 'ALPHA-AMINOISOBUTYRIC ACID' ? 'C4 H9 N O2' 103.120 DIV 'D-peptide linking' . D-ISOVALINE ? 'C5 H11 N O2' 117.146 EOH non-polymer . ETHANOL ? 'C2 H6 O' 46.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HOH non-polymer . WATER ? 'H2 O' 18.015 HYP 'L-peptide linking' n 4-HYDROXYPROLINE HYDROXYPROLINE 'C5 H9 N O3' 131.130 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PHL 'L-peptide linking' n L-PHENYLALANINOL 'bound form of Phenylalaninal' 'C9 H13 N O' 151.206 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 # _exptl.entry_id 1OB7 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.60 _exptl_crystal.density_percent_sol 23 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.60 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details '0.1 M NAAC/HAC PH=4.60, 38% ETOH' # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'BRUKER SMART 6000' _diffrn_detector.pdbx_collection_date 2002-05-15 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'BRUKER M06XCE' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 1OB7 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 28.620 _reflns.d_resolution_high 0.890 _reflns.number_obs 8776 _reflns.number_all ? _reflns.percent_possible_obs 99.3 _reflns.pdbx_Rmerge_I_obs 0.03060 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 50.4400 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 8.690 _reflns.pdbx_CC_half ? _reflns.pdbx_Rpim_I_all ? _reflns.pdbx_Rrim_I_all ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 0.89 _reflns_shell.d_res_low 1.00 _reflns_shell.percent_possible_all 97.6 _reflns_shell.Rmerge_I_obs 0.03490 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 26.510 _reflns_shell.pdbx_redundancy 4.36 _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_CC_half ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_Rrim_I_all ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 1OB7 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs ? _refine.ls_number_reflns_all 8776 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.62 _refine.ls_d_res_high 0.89 _refine.ls_percent_reflns_obs 99.3 _refine.ls_R_factor_obs 0.0716 _refine.ls_R_factor_all 0.0719 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.0770 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 431 _refine.ls_number_parameters 1294 _refine.ls_number_restraints 1519 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R-VALUE' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'DIRECT METHODS' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case 'RESTRAINTS FOR AIB, DIV, HYP AND PHL FROM ANTIAMOEBIN (PDB 1JOH)' _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_analyze.entry_id 1OB7 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 1 _refine_analyze.occupancy_sum_hydrogen 122.8 _refine_analyze.occupancy_sum_non_hydrogen 134.9 # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 125 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 7 _refine_hist.number_atoms_solvent 11 _refine_hist.number_atoms_total 143 _refine_hist.d_res_high 0.89 _refine_hist.d_res_low 28.62 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.028 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.002 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.499 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.140 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.111 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.038 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.000 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.entry_id 1OB7 _pdbx_refine.R_factor_all_no_cutoff 0.0719 _pdbx_refine.R_factor_obs_no_cutoff 0.0716 _pdbx_refine.free_R_factor_no_cutoff 0.0770 _pdbx_refine.free_R_error_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_no_cutoff 431 _pdbx_refine.R_factor_all_4sig_cutoff 0.0712 _pdbx_refine.R_factor_obs_4sig_cutoff 0.0709 _pdbx_refine.free_R_factor_4sig_cutoff 0.0758 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 424 _pdbx_refine.number_reflns_obs_4sig_cutoff 8168 # _struct.entry_id 1OB7 _struct.title 'Cephaibol C' _struct.pdbx_descriptor 'CEPHAIBOL C' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1OB7 _struct_keywords.pdbx_keywords ANTIBIOTIC _struct_keywords.text 'ION CHANNEL, CEPHAIBOL, PEPTAIBOL, ANTIBACTERIAL, ANTIFUNGAL, ANTIBIOTIC' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_conf.conf_type_id HELX_P _struct_conf.id HELX_P1 _struct_conf.pdbx_PDB_helix_id 1 _struct_conf.beg_label_comp_id PHE _struct_conf.beg_label_asym_id A _struct_conf.beg_label_seq_id 2 _struct_conf.pdbx_beg_PDB_ins_code ? _struct_conf.end_label_comp_id HYP _struct_conf.end_label_asym_id A _struct_conf.end_label_seq_id 11 _struct_conf.pdbx_end_PDB_ins_code ? _struct_conf.beg_auth_comp_id PHE _struct_conf.beg_auth_asym_id A _struct_conf.beg_auth_seq_id 1 _struct_conf.end_auth_comp_id HYP _struct_conf.end_auth_asym_id A _struct_conf.end_auth_seq_id 10 _struct_conf.pdbx_PDB_helix_class 1 _struct_conf.details ? _struct_conf.pdbx_PDB_helix_length 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale both ? A ACE 1 C ? ? ? 1_555 A PHE 2 N ? ? A ACE 0 A PHE 1 1_555 ? ? ? ? ? ? ? 1.334 ? covale2 covale both ? A PHE 2 C ? ? ? 1_555 A AIB 3 N ? ? A PHE 1 A AIB 2 1_555 ? ? ? ? ? ? ? 1.331 ? covale3 covale both ? A AIB 3 C ? ? ? 1_555 A AIB 4 N ? ? A AIB 2 A AIB 3 1_555 ? ? ? ? ? ? ? 1.339 ? covale4 covale both ? A AIB 4 C ? ? ? 1_555 A AIB 5 N ? ? A AIB 3 A AIB 4 1_555 ? ? ? ? ? ? ? 1.326 ? covale5 covale both ? A AIB 5 C ? ? ? 1_555 A AIB 6 N ? ? A AIB 4 A AIB 5 1_555 ? ? ? ? ? ? ? 1.338 ? covale6 covale both ? A AIB 6 C ? ? ? 1_555 A GLY 7 N ? ? A AIB 5 A GLY 6 1_555 ? ? ? ? ? ? ? 1.327 ? covale7 covale both ? A LEU 8 C ? ? ? 1_555 A DIV 9 N ? ? A LEU 7 A DIV 8 1_555 ? ? ? ? ? ? ? 1.343 ? covale8 covale both ? A DIV 9 C ? ? ? 1_555 A AIB 10 N ? ? A DIV 8 A AIB 9 1_555 ? ? ? ? ? ? ? 1.337 ? covale9 covale both ? A AIB 10 C ? ? ? 1_555 A HYP 11 N ? ? A AIB 9 A HYP 10 1_555 ? ? ? ? ? ? ? 1.342 ? metalc1 metalc ? ? A HYP 11 O ? ? ? 1_555 D NA . NA ? ? A HYP 10 A NA 20 1_555 ? ? ? ? ? ? ? 2.861 ? covale10 covale both ? A HYP 11 C ? ? ? 1_555 A GLN 12 N ? ? A HYP 10 A GLN 11 1_555 ? ? ? ? ? ? ? 1.335 ? covale11 covale both ? A GLN 12 C ? ? ? 1_555 A DIV 13 N B ? A GLN 11 A DIV 12 1_555 ? ? ? ? ? ? ? 1.339 ? covale12 covale both ? A DIV 13 C B ? ? 1_555 A HYP 14 N ? ? A DIV 12 A HYP 13 1_555 ? ? ? ? ? ? ? 1.343 ? covale13 covale both ? A HYP 14 C ? ? ? 1_555 A AIB 15 N ? ? A HYP 13 A AIB 14 1_555 ? ? ? ? ? ? ? 1.300 ? covale14 covale both ? A AIB 15 C ? ? ? 1_555 A PRO 16 N ? ? A AIB 14 A PRO 15 1_555 ? ? ? ? ? ? ? 1.310 ? covale15 covale both ? A PRO 16 C ? ? ? 1_555 A PHL 17 N ? ? A PRO 15 A PHL 16 1_555 ? ? ? ? ? ? ? 1.316 ? metalc2 metalc ? ? D NA . NA ? ? ? 1_555 A GLN 12 OE1 ? ? A NA 20 A GLN 11 1_555 ? ? ? ? ? ? ? 2.848 ? metalc3 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 20 A HOH 2009 1_655 ? ? ? ? ? ? ? 2.527 ? metalc4 metalc ? ? D NA . NA ? ? ? 1_555 E HOH . O ? ? A NA 20 A HOH 2008 1_655 ? ? ? ? ? ? ? 2.744 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE NA A 20' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EOH A 18' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EOH A 19' AC4 Software ? ? ? ? 13 'BINDING SITE FOR CHAIN A OF CEPHAIBOL C' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 GLY A 7 ? GLY A 6 . ? 4_555 ? 2 AC1 5 HYP A 11 ? HYP A 10 . ? 1_555 ? 3 AC1 5 GLN A 12 ? GLN A 11 . ? 1_555 ? 4 AC1 5 HOH E . ? HOH A 2008 . ? 1_655 ? 5 AC1 5 HOH E . ? HOH A 2009 . ? 1_655 ? 6 AC2 4 AIB A 3 ? AIB A 2 . ? 4_555 ? 7 AC2 4 AIB A 4 ? AIB A 3 . ? 4_455 ? 8 AC2 4 HOH E . ? HOH A 2001 . ? 4_555 ? 9 AC2 4 HOH E . ? HOH A 2007 . ? 4_545 ? 10 AC3 4 ACE A 1 ? ACE A 0 . ? 1_545 ? 11 AC3 4 DIV A 13 ? DIV A 12 . ? 3_745 ? 12 AC3 4 PRO A 16 ? PRO A 15 . ? 1_555 ? 13 AC3 4 PHL A 17 ? PHL A 16 . ? 1_655 ? 14 AC4 13 EOH B . ? EOH A 18 . ? 4_455 ? 15 AC4 13 EOH B . ? EOH A 18 . ? 4_555 ? 16 AC4 13 EOH C . ? EOH A 19 . ? 1_565 ? 17 AC4 13 EOH C . ? EOH A 19 . ? 3_755 ? 18 AC4 13 EOH C . ? EOH A 19 . ? 1_555 ? 19 AC4 13 EOH C . ? EOH A 19 . ? 1_455 ? 20 AC4 13 NA D . ? NA A 20 . ? 1_555 ? 21 AC4 13 NA D . ? NA A 20 . ? 4_455 ? 22 AC4 13 HOH E . ? HOH A 2008 . ? 1_555 ? 23 AC4 13 HOH E . ? HOH A 2009 . ? 1_555 ? 24 AC4 13 HOH E . ? HOH A 2010 . ? 1_555 ? 25 AC4 13 HOH E . ? HOH A 2011 . ? 1_555 ? 26 AC4 13 HOH E . ? HOH A 2011 . ? 1_655 ? # _database_PDB_matrix.entry_id 1OB7 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1OB7 _atom_sites.fract_transf_matrix[1][1] 0.111086 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034942 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.024331 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N NA O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ACE 1 0 0 ACE ACE A . n A 1 2 PHE 2 1 1 PHE PHE A . n A 1 3 AIB 3 2 2 AIB AIB A . n A 1 4 AIB 4 3 3 AIB AIB A . n A 1 5 AIB 5 4 4 AIB AIB A . n A 1 6 AIB 6 5 5 AIB AIB A . n A 1 7 GLY 7 6 6 GLY GLY A . n A 1 8 LEU 8 7 7 LEU LEU A . n A 1 9 DIV 9 8 8 DIV DIV A . n A 1 10 AIB 10 9 9 AIB AIB A . n A 1 11 HYP 11 10 10 HYP HYP A . n A 1 12 GLN 12 11 11 GLN GLN A . n A 1 13 DIV 13 12 12 DIV DIV A . y A 1 13 AIB 13 12 12 AIB AIB A . y A 1 14 HYP 14 13 13 HYP HYP A . n A 1 15 AIB 15 14 14 AIB AIB A . n A 1 16 PRO 16 15 15 PRO PRO A . n A 1 17 PHL 17 16 16 PHL PHL A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EOH 1 18 18 EOH EOH A . C 2 EOH 1 19 19 EOH EOH A . D 3 NA 1 20 20 NA NA A . E 4 HOH 1 2001 2001 HOH HOH A . E 4 HOH 2 2002 2002 HOH HOH A . E 4 HOH 3 2003 2003 HOH HOH A . E 4 HOH 4 2004 2004 HOH HOH A . E 4 HOH 5 2005 2005 HOH HOH A . E 4 HOH 6 2006 2006 HOH HOH A . E 4 HOH 7 2007 2007 HOH HOH A . E 4 HOH 8 2008 2008 HOH HOH A . E 4 HOH 9 2009 2009 HOH HOH A . E 4 HOH 10 2010 2010 HOH HOH A . E 4 HOH 11 2011 2011 HOH HOH A . # _pdbx_molecule_features.prd_id PRD_000158 _pdbx_molecule_features.name 'Cephaibol C' _pdbx_molecule_features.type Peptaibol _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;CEPHAIBOL C IS A HEXADECAMERIC HELICAL PEPTIDE. THE N-TERM IS ACETYLATED (RESIDUE 0) ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000158 _pdbx_molecule.asym_id A # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A AIB 3 A AIB 2 ? ALA 'ALPHA-AMINOISOBUTYRIC ACID' 2 A AIB 4 A AIB 3 ? ALA 'ALPHA-AMINOISOBUTYRIC ACID' 3 A AIB 5 A AIB 4 ? ALA 'ALPHA-AMINOISOBUTYRIC ACID' 4 A AIB 6 A AIB 5 ? ALA 'ALPHA-AMINOISOBUTYRIC ACID' 5 A AIB 10 A AIB 9 ? ALA 'ALPHA-AMINOISOBUTYRIC ACID' 6 A HYP 11 A HYP 10 ? PRO 4-HYDROXYPROLINE 7 A AIB 13 A AIB 12 ? ALA 'ALPHA-AMINOISOBUTYRIC ACID' 8 A HYP 14 A HYP 13 ? PRO 4-HYDROXYPROLINE 9 A AIB 15 A AIB 14 ? ALA 'ALPHA-AMINOISOBUTYRIC ACID' 10 A PHL 17 A PHL 16 ? PHE L-PHENYLALANINOL # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PQS _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? A HYP 11 ? A HYP 10 ? 1_555 NA ? D NA . ? A NA 20 ? 1_555 OE1 ? A GLN 12 ? A GLN 11 ? 1_555 88.9 ? 2 O ? A HYP 11 ? A HYP 10 ? 1_555 NA ? D NA . ? A NA 20 ? 1_555 O ? E HOH . ? A HOH 2009 ? 1_655 124.4 ? 3 OE1 ? A GLN 12 ? A GLN 11 ? 1_555 NA ? D NA . ? A NA 20 ? 1_555 O ? E HOH . ? A HOH 2009 ? 1_655 96.2 ? 4 O ? A HYP 11 ? A HYP 10 ? 1_555 NA ? D NA . ? A NA 20 ? 1_555 O ? E HOH . ? A HOH 2008 ? 1_655 125.9 ? 5 OE1 ? A GLN 12 ? A GLN 11 ? 1_555 NA ? D NA . ? A NA 20 ? 1_555 O ? E HOH . ? A HOH 2008 ? 1_655 94.5 ? 6 O ? E HOH . ? A HOH 2009 ? 1_655 NA ? D NA . ? A NA 20 ? 1_555 O ? E HOH . ? A HOH 2008 ? 1_655 2.2 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-12-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-11-30 4 'Structure model' 1 3 2018-05-30 5 'Structure model' 1 4 2019-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' Other 7 4 'Structure model' 'Data collection' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Refinement description' 11 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' diffrn_detector 2 5 'Structure model' chem_comp 3 5 'Structure model' refine 4 5 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_diffrn_detector.type' 2 5 'Structure model' '_chem_comp.pdbx_synonyms' 3 5 'Structure model' '_refine.pdbx_ls_cross_valid_method' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal _software.date _software.type _software.location _software.language SHELXL-97 refinement . ? 1 ? ? ? ? SAINT 'data reduction' . ? 2 ? ? ? ? SADABS 'data scaling' . ? 3 ? ? ? ? SHELXD phasing . ? 4 ? ? ? ? # _pdbx_entry_details.entry_id 1OB7 _pdbx_entry_details.compound_details ;CEPHAIBOL C IS LINEAR PEPTIDE, A MEMBER OF THE PEPTAIBOL FAMILY OF MEMBRANE CHANNEL FORMING PEPTIDES. HERE, CEPHAIBOL C IS REPRESENTED BY THE SEQUENCE (SEQRES) GROUP: 1 NAME: CEPHAIBOL C CHAIN: A COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 0 TO 16 DESCRIPTION: CEPHAIBOL C IS A HEXADECAMERIC HELICAL PEPTIDE. THE N-TERM IS ACETYLATED (RESIDUE 0) ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'SLIGHT CONTAMINATION CAUSED MICROHETERGENEITY AT POSITION 12' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ETHANOL EOH 3 'SODIUM ION' NA 4 water HOH #