HEADER HYDROLASE 28-JAN-03 1OB8 TITLE HOLLIDAY JUNCTION RESOLVING ENZYME COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOLLIDAY-JUNCTION RESOLVASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: HOLLIDAY JUNCTION ENDONUCLEASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; SOURCE 3 ORGANISM_TAXID: 2287; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_VARIANT: RIL; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET19B KEYWDS HYDROLASE, ENZYME, HOMOLOGOUS RECOMBINATION, HOLLIDAY JUNCTION KEYWDS 2 RESOLVING ENZYME, NUCLEASE, ARCHAEA, THERMOPHILE EXPDTA X-RAY DIFFRACTION AUTHOR C.L.MIDDLETON,J.L.PARKER,D.J.RICHARD,M.F.WHITE,C.S.BOND REVDAT 6 01-MAY-24 1OB8 1 REMARK REVDAT 5 06-MAR-19 1OB8 1 REMARK REVDAT 4 31-JAN-18 1OB8 1 SOURCE REVDAT 3 05-JUL-17 1OB8 1 REMARK REVDAT 2 24-FEB-09 1OB8 1 VERSN REVDAT 1 15-OCT-04 1OB8 0 JRNL AUTH C.L.MIDDLETON,J.L.PARKER,D.J.RICHARD,M.F.WHITE,C.S.BOND JRNL TITL SUBSTRATE RECOGNITION AND CATALYSIS BY THE HOLLIDAY JUNCTION JRNL TITL 2 RESOLVING ENZYME HJE. JRNL REF NUCLEIC ACIDS RES. V. 32 5442 2004 JRNL REFN ISSN 0305-1048 JRNL PMID 15479781 JRNL DOI 10.1093/NAR/GKH869 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 28499 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2007 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3650 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1989 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 251 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.01000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.128 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.131 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.088 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.799 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2139 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2071 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2882 ; 1.292 ; 1.994 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4861 ; 0.767 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 244 ; 5.945 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 342 ; 0.076 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2178 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 382 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 432 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2677 ; 0.233 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1425 ; 0.102 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 216 ; 0.165 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.193 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 54 ; 0.270 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 10 ; 0.175 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1244 ; 0.832 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2064 ; 1.535 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 895 ; 1.721 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 817 ; 2.969 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 6 A 129 4 REMARK 3 1 B 6 B 129 4 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1832 ; 0.43 ; 0.50 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1832 ; 0.88 ; 2.00 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL PLUS MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1OB8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 28-JAN-03. REMARK 100 THE DEPOSITION ID IS D_1290011996. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 9.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX9.6 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.86 REMARK 200 MONOCHROMATOR : SI FILTER REMARK 200 OPTICS : RH COATED SI MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30127 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.250 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 41.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.65200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.750 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: SE-SAD DERIVED STRUCTURE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.74 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M LITHIUM SULFATE,0.1M TRIS PH 9 REMARK 280 20% PEG 4000,15% ETHYLENE GLYCOL,293K, PH 9.00 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.28000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 23.64000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 35.46000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 11.82000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 59.10000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ARG A 3 REMARK 465 ASP A 4 REMARK 465 ILE A 5 REMARK 465 SER A 30 REMARK 465 ASN A 31 REMARK 465 SER A 32 REMARK 465 SER A 33 REMARK 465 PRO A 34 REMARK 465 GLU A 130 REMARK 465 LYS A 131 REMARK 465 ILE A 132 REMARK 465 LEU A 133 REMARK 465 THR A 134 REMARK 465 PRO A 135 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ARG B 3 REMARK 465 SER B 30 REMARK 465 ASN B 31 REMARK 465 SER B 32 REMARK 465 SER B 33 REMARK 465 PRO B 34 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 79 47.64 -99.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2012 DISTANCE = 7.86 ANGSTROMS REMARK 525 HOH B2013 DISTANCE = 6.52 ANGSTROMS REMARK 525 HOH B2029 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH B2037 DISTANCE = 5.86 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1003 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1133 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1134 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A1135 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OB9 RELATED DB: PDB REMARK 900 HOLLIDAY JUNCTION RESOLVING ENZYME BOUND IN THE ACTIVE SITE. DBREF 1OB8 A 1 135 UNP Q97YX6 Q97YX6 1 135 DBREF 1OB8 B 1 135 UNP Q97YX6 Q97YX6 1 135 SEQRES 1 A 135 MET ASN ARG ASP ILE GLY LYS ASN ALA GLU ARG GLU LEU SEQRES 2 A 135 VAL SER ILE LEU ARG GLY GLU GLY PHE ASN ALA VAL ARG SEQRES 3 A 135 ILE PRO THR SER ASN SER SER PRO ASN PRO LEU PRO ASP SEQRES 4 A 135 ILE PHE ALA THR LYS GLY ASN THR LEU LEU SER ILE GLU SEQRES 5 A 135 CYS LYS SER THR TRP GLU ASN LYS VAL LYS VAL LYS GLU SEQRES 6 A 135 HIS GLN VAL ARG LYS LEU LEU ASP PHE LEU SER MET PHE SEQRES 7 A 135 THR MET LYS GLY VAL PRO LEU ILE ALA ILE LYS PHE LYS SEQRES 8 A 135 GLN VAL HIS GLU TRP ARG VAL LEU VAL PRO GLU LYS ALA SEQRES 9 A 135 GLU ASP ILE ILE VAL THR ILE ASP ASN SER ILE PRO ILE SEQRES 10 A 135 GLU ASP LEU PHE LYS ILE LEU GLU LYS ARG ILE GLU GLU SEQRES 11 A 135 LYS ILE LEU THR PRO SEQRES 1 B 135 MET ASN ARG ASP ILE GLY LYS ASN ALA GLU ARG GLU LEU SEQRES 2 B 135 VAL SER ILE LEU ARG GLY GLU GLY PHE ASN ALA VAL ARG SEQRES 3 B 135 ILE PRO THR SER ASN SER SER PRO ASN PRO LEU PRO ASP SEQRES 4 B 135 ILE PHE ALA THR LYS GLY ASN THR LEU LEU SER ILE GLU SEQRES 5 B 135 CYS LYS SER THR TRP GLU ASN LYS VAL LYS VAL LYS GLU SEQRES 6 B 135 HIS GLN VAL ARG LYS LEU LEU ASP PHE LEU SER MET PHE SEQRES 7 B 135 THR MET LYS GLY VAL PRO LEU ILE ALA ILE LYS PHE LYS SEQRES 8 B 135 GLN VAL HIS GLU TRP ARG VAL LEU VAL PRO GLU LYS ALA SEQRES 9 B 135 GLU ASP ILE ILE VAL THR ILE ASP ASN SER ILE PRO ILE SEQRES 10 B 135 GLU ASP LEU PHE LYS ILE LEU GLU LYS ARG ILE GLU GLU SEQRES 11 B 135 LYS ILE LEU THR PRO HET SO4 A1001 5 HET SO4 A1002 5 HET SO4 A1003 5 HET EDO A1133 4 HET EDO A1134 4 HET EDO A1135 4 HET SO4 B1001 5 HET SO4 B1002 5 HET SO4 B1003 5 HETNAM SO4 SULFATE ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 SO4 6(O4 S 2-) FORMUL 6 EDO 3(C2 H6 O2) FORMUL 12 HOH *251(H2 O) HELIX 1 1 GLY A 6 GLU A 20 1 15 HELIX 2 2 LYS A 64 MET A 77 1 14 HELIX 3 3 GLN A 92 HIS A 94 5 3 HELIX 4 4 ILE A 117 GLU A 129 1 13 HELIX 5 5 GLY B 6 GLU B 20 1 15 HELIX 6 6 LYS B 64 SER B 76 1 13 HELIX 7 7 ILE B 117 GLU B 130 1 14 SHEET 1 AA 6 ASN A 23 ARG A 26 0 SHEET 2 AA 6 ILE A 40 LYS A 44 -1 O PHE A 41 N VAL A 25 SHEET 3 AA 6 THR A 47 THR A 56 -1 O THR A 47 N LYS A 44 SHEET 4 AA 6 LYS A 81 PHE A 90 1 O LYS A 81 N LEU A 48 SHEET 5 AA 6 GLU A 95 LEU A 99 -1 O GLU A 95 N PHE A 90 SHEET 6 AA 6 ILE A 115 PRO A 116 -1 O ILE A 115 N VAL A 98 SHEET 1 AB 2 LYS A 60 VAL A 63 0 SHEET 2 AB 2 ILE A 107 THR A 110 -1 O ILE A 107 N VAL A 63 SHEET 1 BA 6 ASN B 23 ARG B 26 0 SHEET 2 BA 6 ILE B 40 LYS B 44 -1 O PHE B 41 N VAL B 25 SHEET 3 BA 6 THR B 47 THR B 56 -1 O THR B 47 N LYS B 44 SHEET 4 BA 6 LYS B 81 PHE B 90 1 O LYS B 81 N LEU B 48 SHEET 5 BA 6 GLU B 95 LEU B 99 -1 O GLU B 95 N PHE B 90 SHEET 6 BA 6 ILE B 115 PRO B 116 -1 O ILE B 115 N VAL B 98 SHEET 1 BB 2 LYS B 60 VAL B 63 0 SHEET 2 BB 2 ILE B 107 THR B 110 -1 O ILE B 107 N VAL B 63 SITE 1 AC1 3 ARG A 11 ARG A 26 HOH A2117 SITE 1 AC2 4 GLY A 45 ASN A 46 ILE A 128 HOH A2055 SITE 1 AC3 6 LYS A 81 LYS A 89 LYS A 91 ARG A 127 SITE 2 AC3 6 EDO A1135 HOH A2120 SITE 1 AC4 10 GLU A 20 LYS A 44 GLY B 6 ASN B 8 SITE 2 AC4 10 ALA B 9 SER B 55 HOH B2061 HOH B2119 SITE 3 AC4 10 HOH B2120 HOH B2121 SITE 1 AC5 3 ARG B 11 ARG B 26 HOH B2122 SITE 1 AC6 7 GLY B 45 ASN B 46 THR B 47 LYS B 81 SITE 2 AC6 7 ILE B 128 LYS B 131 HOH B2125 SITE 1 AC7 5 GLN A 92 ILE A 115 ASP A 119 HOH A2121 SITE 2 AC7 5 HOH A2122 SITE 1 AC8 6 ASP A 73 SER A 76 MET A 77 HOH A2123 SITE 2 AC8 6 HOH A2124 ASN B 23 SITE 1 AC9 7 TRP A 57 GLY A 82 PRO A 84 LYS A 91 SITE 2 AC9 7 ARG A 127 SO4 A1003 HOH A2125 CRYST1 90.577 90.577 70.920 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011040 0.006374 0.000000 0.00000 SCALE2 0.000000 0.012748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014100 0.00000 MTRIX1 1 -0.269421 -0.391712 -0.879758 55.69850 1 MTRIX2 1 -0.352693 -0.809932 0.468633 80.75550 1 MTRIX3 1 -0.896114 0.436544 0.080059 12.55550 1