HEADER TRANSFERASE 13-FEB-03 1OD6 TITLE THE CRYSTAL STRUCTURE OF PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM TITLE 2 THERMUS THERMOPHILUS IN COMPLEX WITH 4'-PHOSPHOPANTETHEINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PPAT; COMPND 5 EC: 2.7.7.3; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 300852; SOURCE 4 STRAIN: HB8; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET 11A KEYWDS COENZYME A BIOSYNTHESIS, TRANSFERASE, NUCLEOTIDYLTRANSFERASE, RIKEN KEYWDS 2 STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, RSGI, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR H.TAKAHASHI,E.INAGAKI,M.MIYANO,T.H.TAHIROV REVDAT 5 13-DEC-23 1OD6 1 REMARK REVDAT 4 16-DEC-15 1OD6 1 AUTHOR JRNL REMARK VERSN REVDAT 4 2 1 DBREF FORMUL REVDAT 3 24-FEB-09 1OD6 1 VERSN REVDAT 2 02-JAN-04 1OD6 1 AUTHOR JRNL REVDAT 1 13-MAR-03 1OD6 0 JRNL AUTH H.TAKAHASHI,E.INAGAKI,Y.FUJIMOTO,C.KUROISHI,Y.NODAKE, JRNL AUTH 2 Y.NAKAMURA,F.ARISAKA,K.YUTANI,S.KURAMITSU,S.YOKOYAMA, JRNL AUTH 3 M.YAMAMOTO,M.MIYANO,T.H.TAHIROV JRNL TITL STRUCTURE AND IMPLICATIONS FOR THE THERMAL STABILITY OF JRNL TITL 2 PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM THERMUS JRNL TITL 3 THERMOPHILUS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 60 97 2004 JRNL REFN ISSN 0907-4449 JRNL PMID 14684898 JRNL DOI 10.1107/S0907444903025319 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1745265.870 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 47263 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 4761 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6974 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 9.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 750 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1209 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 37 REMARK 3 SOLVENT ATOMS : 162 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.50 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.27000 REMARK 3 B22 (A**2) : -1.27000 REMARK 3 B33 (A**2) : 2.54000 REMARK 3 B12 (A**2) : -0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.18 REMARK 3 ESD FROM SIGMAA (A) : 0.22 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.720 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.740 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.930 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.650 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.650 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 52.10 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : LIGAND.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER_REP.TOP REMARK 3 TOPOLOGY FILE 3 : LIGAND.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OD6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 13-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1290012108. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.30 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SPRING-8 REMARK 200 BEAMLINE : BL26B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU IMAGE PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47654 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 200 DATA REDUNDANCY : 10.30 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.3 REMARK 200 DATA REDUNDANCY IN SHELL : 9.80 REMARK 200 R MERGE FOR SHELL (I) : 0.35900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 8.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 1QJC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 70.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN WAS CRYSTALLIZED FROM 1.1M REMARK 280 LISULF, 100 MM MES, PH 6.25., PH 6.30 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 57.85750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.40404 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 38.55367 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 57.85750 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.40404 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 38.55367 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 57.85750 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.40404 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 38.55367 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 57.85750 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.40404 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 38.55367 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 57.85750 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.40404 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.55367 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 57.85750 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.40404 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 38.55367 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 66.80809 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 77.10733 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 66.80809 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 77.10733 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 66.80809 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 77.10733 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 66.80809 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 77.10733 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 66.80809 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 77.10733 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 66.80809 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 77.10733 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 22500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -485.5 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 115.71500 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 57.85750 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 100.21213 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 -0.866025 0.000000 115.71500 REMARK 350 BIOMT2 4 -0.866025 0.500000 0.000000 66.80809 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -38.55367 REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 -1.000000 0.000000 66.80809 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -38.55367 REMARK 350 BIOMT1 6 -0.500000 0.866025 0.000000 57.85750 REMARK 350 BIOMT2 6 0.866025 0.500000 0.000000 -33.40404 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -38.55367 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2034 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 38 REMARK 465 SER A 39 REMARK 465 LYS A 40 REMARK 465 ARG A 41 REMARK 465 GLY A 42 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 43 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2126 O HOH A 2126 17554 1.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 10 74.57 -118.59 REMARK 500 ALA A 92 -8.41 -55.97 REMARK 500 SER A 94 151.88 -40.92 REMARK 500 PRO A 111 115.66 -35.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1162 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 1164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PNS A 1161 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1B6T RELATED DB: PDB REMARK 900 PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE IN COMPLEX WITH 3'- REMARK 900 DEPHOSPHO-COA FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1GN8 RELATED DB: PDB REMARK 900 PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE IN COMPLEX WITH MN2+ATP FROM REMARK 900 ESCHERICHIA COLI REMARK 900 RELATED ID: 1H1T RELATED DB: PDB REMARK 900 PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE IN COMPLEX WITH COENZYME A REMARK 900 FROM ESCHERICHIA COLI REMARK 900 RELATED ID: 1QJC RELATED DB: PDB REMARK 900 PHOSPHOPANTETHEINE ADENYLYLTRANSFERASE FROM ESCHERICHIA COLI DBREF 1OD6 A 1 160 UNP Q5SJS9 COAD_THET8 1 160 SEQRES 1 A 160 MET HIS VAL VAL TYR PRO GLY SER PHE ASP PRO LEU THR SEQRES 2 A 160 ASN GLY HIS LEU ASP VAL ILE GLN ARG ALA SER ARG LEU SEQRES 3 A 160 PHE GLU LYS VAL THR VAL ALA VAL LEU GLU ASN PRO SER SEQRES 4 A 160 LYS ARG GLY GLN TYR LEU PHE SER ALA GLU GLU ARG LEU SEQRES 5 A 160 ALA ILE ILE ARG GLU ALA THR ALA HIS LEU ALA ASN VAL SEQRES 6 A 160 GLU ALA ALA THR PHE SER GLY LEU LEU VAL ASP PHE VAL SEQRES 7 A 160 ARG ARG VAL GLY ALA GLN ALA ILE VAL LYS GLY LEU ARG SEQRES 8 A 160 ALA VAL SER ASP TYR GLU TYR GLU LEU GLN MET ALA HIS SEQRES 9 A 160 LEU ASN ARG GLN LEU TYR PRO GLY LEU GLU THR LEU PHE SEQRES 10 A 160 ILE LEU ALA ALA THR ARG TYR SER PHE VAL SER SER THR SEQRES 11 A 160 MET VAL LYS GLU ILE ALA ARG TYR GLY GLY ASP VAL SER SEQRES 12 A 160 LYS LEU VAL PRO PRO ALA THR LEU ARG ALA LEU LYS ALA SEQRES 13 A 160 LYS LEU GLY GLN HET PNS A1161 22 HET SO4 A1162 5 HET SO4 A1163 5 HET SO4 A1164 5 HETNAM PNS 4'-PHOSPHOPANTETHEINE HETNAM SO4 SULFATE ION FORMUL 2 PNS C11 H23 N2 O7 P S FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *162(H2 O) HELIX 1 1 THR A 13 PHE A 27 1 15 HELIX 2 2 SER A 47 THR A 59 1 13 HELIX 3 3 LEU A 73 VAL A 81 1 9 HELIX 4 4 ASP A 95 TYR A 110 1 16 HELIX 5 5 ALA A 121 SER A 125 5 5 HELIX 6 6 SER A 128 TYR A 138 1 11 HELIX 7 7 PRO A 147 LEU A 158 1 12 SHEET 1 AA 5 VAL A 65 PHE A 70 0 SHEET 2 AA 5 LYS A 29 LEU A 35 1 O VAL A 30 N GLU A 66 SHEET 3 AA 5 HIS A 2 GLY A 7 1 O VAL A 3 N THR A 31 SHEET 4 AA 5 ALA A 85 LEU A 90 1 O ALA A 85 N VAL A 4 SHEET 5 AA 5 GLU A 114 LEU A 119 1 O GLU A 114 N ILE A 86 CISPEP 1 ASP A 10 PRO A 11 0 -0.06 SITE 1 AC1 7 HIS A 104 ARG A 107 GLN A 108 ALA A 121 SITE 2 AC1 7 THR A 122 HOH A2124 HOH A2157 SITE 1 AC2 8 HIS A 16 ARG A 91 SER A 128 SER A 129 SITE 2 AC2 8 HOH A2021 HOH A2158 HOH A2159 HOH A2160 SITE 1 AC3 5 GLN A 84 TYR A 110 HOH A2115 HOH A2161 SITE 2 AC3 5 HOH A2162 SITE 1 AC4 17 PRO A 6 GLY A 7 SER A 8 LEU A 35 SITE 2 AC4 17 GLY A 72 LEU A 73 LEU A 74 ASN A 106 SITE 3 AC4 17 MET A 131 GLU A 134 HOH A2133 HOH A2151 SITE 4 AC4 17 HOH A2152 HOH A2153 HOH A2154 HOH A2155 SITE 5 AC4 17 HOH A2156 CRYST1 115.715 115.715 115.661 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008642 0.004989 0.000000 0.00000 SCALE2 0.000000 0.009979 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008646 0.00000