HEADER HYDROLASE 20-FEB-03 1ODT TITLE CEPHALOSPORIN C DEACETYLASE MUTATED, IN COMPLEX WITH ACETATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CEPHALOSPORIN C DEACETYLASE; COMPND 3 CHAIN: C, H; COMPND 4 SYNONYM: MULTI-FUNCTIONAL ESTERASE, CAH; COMPND 5 EC: 3.1.1.41; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 OTHER_DETAILS: COMPLEX WITH ACETATE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET26B; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET26B KEYWDS HYDROLASE, ALPHA/BETA HYDROLASE, ACETYLXYLAN, CARBOHYDRATE ESTERASE, KEYWDS 2 CEPHALOSPORIN EXPDTA X-RAY DIFFRACTION AUTHOR F.VINCENT,S.J.CHARNOCK,K.H.G.VERSCHUEREN,J.P.TURKENBURG,D.J.SCOTT, AUTHOR 2 W.A.OFFEN,S.ROBERTS,G.PELL,H.J.GILBERT,J.A.BRANNIGAN,G.J.DAVIES REVDAT 4 13-DEC-23 1ODT 1 REMARK REVDAT 3 13-JUL-11 1ODT 1 VERSN REVDAT 2 24-FEB-09 1ODT 1 VERSN REVDAT 1 10-JUL-03 1ODT 0 JRNL AUTH F.VINCENT,S.J.CHARNOCK,K.H.G.VERSCHUEREN,J.P.TURKENBURG, JRNL AUTH 2 D.J.SCOTT,W.A.OFFEN,S.ROBERTS,G.PELL,H.J.GILBERT,G.J.DAVIES, JRNL AUTH 3 J.A.BRANNIGAN JRNL TITL MULTIFUNCTIONAL XYLOOLIGOSACCHARIDE/CEPHALOSPORIN C JRNL TITL 2 DEACETYLASE REVEALED BY THE HEXAMERIC STRUCTURE OF THE JRNL TITL 3 BACILLUS SUBTILIS ENZYME AT 1.9A RESOLUTION JRNL REF J.MOL.BIOL. V. 330 593 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12842474 JRNL DOI 10.1016/S0022-2836(03)00632-6 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.19 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.5 REMARK 3 NUMBER OF REFLECTIONS : 63610 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3376 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4548 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2240 REMARK 3 BIN FREE R VALUE SET COUNT : 241 REMARK 3 BIN FREE R VALUE : 0.2840 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5054 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 563 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 10.56 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.94000 REMARK 3 B22 (A**2) : -0.94000 REMARK 3 B33 (A**2) : 1.41000 REMARK 3 B12 (A**2) : -0.47000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.101 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.099 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.004 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.967 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5211 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 4618 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7074 ; 1.589 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10775 ; 1.075 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 632 ; 5.869 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 755 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5800 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1078 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1109 ; 0.227 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 5575 ; 0.246 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2835 ; 0.089 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 445 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 24 ; 0.218 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 60 ; 0.330 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 37 ; 0.208 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3164 ; 0.783 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5096 ; 1.352 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2047 ; 2.413 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1978 ; 3.793 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 317 REMARK 3 ORIGIN FOR THE GROUP (A): 26.3370 77.9850 43.4120 REMARK 3 T TENSOR REMARK 3 T11: 0.0892 T22: 0.1150 REMARK 3 T33: 0.0072 T12: 0.0058 REMARK 3 T13: 0.0150 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 0.3932 L22: 0.6111 REMARK 3 L33: 0.3823 L12: -0.0330 REMARK 3 L13: 0.0887 L23: -0.0952 REMARK 3 S TENSOR REMARK 3 S11: -0.0036 S12: 0.0493 S13: -0.0175 REMARK 3 S21: -0.0398 S22: -0.0017 S23: -0.0373 REMARK 3 S31: 0.0179 S32: 0.0377 S33: 0.0054 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : H 1 H 317 REMARK 3 ORIGIN FOR THE GROUP (A): 24.4900 106.8960 66.7690 REMARK 3 T TENSOR REMARK 3 T11: 0.0837 T22: 0.0979 REMARK 3 T33: 0.0154 T12: -0.0108 REMARK 3 T13: -0.0122 T23: -0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.4109 L22: 0.6824 REMARK 3 L33: 0.3956 L12: -0.0219 REMARK 3 L13: -0.0522 L23: -0.1084 REMARK 3 S TENSOR REMARK 3 S11: -0.0033 S12: -0.0236 S13: 0.0227 REMARK 3 S21: 0.0347 S22: -0.0118 S23: -0.0481 REMARK 3 S31: -0.0368 S32: 0.0492 S33: 0.0150 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1ODT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 20-FEB-03. REMARK 100 THE DEPOSITION ID IS D_1290012218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 63610 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.690 REMARK 200 RESOLUTION RANGE LOW (A) : 95.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : 0.04800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.69 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ODS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M MOPS PH 6.5 0.2 M NA ACETATE 30% REMARK 280 MPD , 0.1M MGCL2,, PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500010 -0.866009 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866042 -0.499990 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.499990 0.866009 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866042 -0.500010 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500010 0.865998 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866042 0.500010 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.499990 -0.866020 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866042 0.499990 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 78.58300 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.37107 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 44.03267 REMARK 290 SMTRY1 8 -0.500010 -0.866009 0.000000 78.58300 REMARK 290 SMTRY2 8 0.866042 -0.499990 0.000000 45.37107 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 44.03267 REMARK 290 SMTRY1 9 -0.499990 0.866009 0.000000 78.58300 REMARK 290 SMTRY2 9 -0.866042 -0.500010 0.000000 45.37107 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 44.03267 REMARK 290 SMTRY1 10 -0.500010 0.865998 0.000000 78.58300 REMARK 290 SMTRY2 10 0.866042 0.500010 0.000000 45.37107 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 44.03267 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 78.58300 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 45.37107 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 44.03267 REMARK 290 SMTRY1 12 -0.499990 -0.866020 0.000000 78.58300 REMARK 290 SMTRY2 12 -0.866042 0.499990 0.000000 45.37107 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 44.03267 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 -0.00100 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 90.74214 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 88.06533 REMARK 290 SMTRY1 14 -0.500010 -0.866009 0.000000 -0.00100 REMARK 290 SMTRY2 14 0.866042 -0.499990 0.000000 90.74214 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 88.06533 REMARK 290 SMTRY1 15 -0.499990 0.866009 0.000000 -0.00100 REMARK 290 SMTRY2 15 -0.866042 -0.500010 0.000000 90.74214 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 88.06533 REMARK 290 SMTRY1 16 -0.500010 0.865998 0.000000 -0.00100 REMARK 290 SMTRY2 16 0.866042 0.500010 0.000000 90.74214 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 88.06533 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 -0.00100 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 90.74214 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 88.06533 REMARK 290 SMTRY1 18 -0.499990 -0.866020 0.000000 -0.00100 REMARK 290 SMTRY2 18 -0.866042 0.499990 0.000000 90.74214 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 88.06533 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500010 -0.866009 0.000000 78.58200 REMARK 350 BIOMT2 2 0.866042 -0.499990 0.000000 136.11321 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.499990 0.866009 0.000000 -78.58500 REMARK 350 BIOMT2 3 -0.866042 -0.500010 0.000000 136.11321 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH C2053 LIES ON A SPECIAL POSITION. REMARK 375 HOH H2061 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 ENGINEERED MUTATION IN CHAIN C, SER 181 TO ALA 181 REMARK 400 ENGINEERED MUTATION IN CHAIN H, SER 181 TO ALA 181 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 318 REMARK 465 GLY H 318 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU C 316 O REMARK 470 LEU H 316 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU H 26 O HOH H 2041 1.97 REMARK 500 O HOH H 2189 O HOH H 2191 2.09 REMARK 500 O HOH C 2081 O HOH C 2187 2.10 REMARK 500 O HOH C 2072 O HOH C 2073 2.12 REMARK 500 O HOH C 2252 O HOH C 2270 2.16 REMARK 500 O HOH C 2140 O HOH H 2138 2.16 REMARK 500 O ASP C 195 O HOH C 2185 2.18 REMARK 500 O HOH C 2162 O HOH C 2169 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU C 3 CB - CG - CD1 ANGL. DEV. = 10.5 DEGREES REMARK 500 ASP C 203 CB - CG - OD2 ANGL. DEV. = 6.1 DEGREES REMARK 500 LEU C 290 CB - CG - CD2 ANGL. DEV. = 11.8 DEGREES REMARK 500 MET H 102 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG H 118 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE C 4 -28.81 -151.29 REMARK 500 SER C 122 -51.67 65.84 REMARK 500 ALA C 181 -118.69 62.96 REMARK 500 TYR C 204 66.86 25.06 REMARK 500 LEU C 207 41.53 73.31 REMARK 500 PHE H 4 -22.00 -156.89 REMARK 500 SER H 122 -53.62 62.85 REMARK 500 ARG H 174 59.80 -140.03 REMARK 500 ALA H 181 -115.22 61.37 REMARK 500 TYR H 204 70.01 22.33 REMARK 500 LEU H 207 41.38 73.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH H2044 DISTANCE = 6.43 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT C1318 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT H1318 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1L7A RELATED DB: PDB REMARK 900 STRUCTURAL GENOMICS, CRYSTAL STRUCTURE OF CEPHALOSPORIN CDEACETYLASE REMARK 900 RELATED ID: 1ODS RELATED DB: PDB REMARK 900 CEPHALOSPORIN C DEACETYLASE FROM BACILLUS SUBTILIS DBREF 1ODT C 1 318 UNP P94388 P94388 1 318 DBREF 1ODT H 1 318 UNP P94388 P94388 1 318 SEQADV 1ODT ALA C 181 UNP P94388 SER 181 ENGINEERED MUTATION SEQADV 1ODT ALA H 181 UNP P94388 SER 181 ENGINEERED MUTATION SEQADV 1ODT GLU C 220 UNP P94388 GLN 220 CONFLICT SEQADV 1ODT GLU H 220 UNP P94388 GLN 220 CONFLICT SEQRES 1 C 318 MET GLN LEU PHE ASP LEU PRO LEU ASP GLN LEU GLN THR SEQRES 2 C 318 TYR LYS PRO GLU LYS THR ALA PRO LYS ASP PHE SER GLU SEQRES 3 C 318 PHE TRP LYS LEU SER LEU GLU GLU LEU ALA LYS VAL GLN SEQRES 4 C 318 ALA GLU PRO ASP LEU GLN PRO VAL ASP TYR PRO ALA ASP SEQRES 5 C 318 GLY VAL LYS VAL TYR ARG LEU THR TYR LYS SER PHE GLY SEQRES 6 C 318 ASN ALA ARG ILE THR GLY TRP TYR ALA VAL PRO ASP LYS SEQRES 7 C 318 GLU GLY PRO HIS PRO ALA ILE VAL LYS TYR HIS GLY TYR SEQRES 8 C 318 ASN ALA SER TYR ASP GLY GLU ILE HIS GLU MET VAL ASN SEQRES 9 C 318 TRP ALA LEU HIS GLY TYR ALA THR PHE GLY MET LEU VAL SEQRES 10 C 318 ARG GLY GLN GLN SER SER GLU ASP THR SER ILE SER PRO SEQRES 11 C 318 HIS GLY HIS ALA LEU GLY TRP MET THR LYS GLY ILE LEU SEQRES 12 C 318 ASP LYS ASP THR TYR TYR TYR ARG GLY VAL TYR LEU ASP SEQRES 13 C 318 ALA VAL ARG ALA LEU GLU VAL ILE SER SER PHE ASP GLU SEQRES 14 C 318 VAL ASP GLU THR ARG ILE GLY VAL THR GLY GLY ALA GLN SEQRES 15 C 318 GLY GLY GLY LEU THR ILE ALA ALA ALA ALA LEU SER ASP SEQRES 16 C 318 ILE PRO LYS ALA ALA VAL ALA ASP TYR PRO TYR LEU SER SEQRES 17 C 318 ASN PHE GLU ARG ALA ILE ASP VAL ALA LEU GLU GLU PRO SEQRES 18 C 318 TYR LEU GLU ILE ASN SER PHE PHE ARG ARG ASN GLY SER SEQRES 19 C 318 PRO GLU THR GLU VAL GLN ALA MET LYS THR LEU SER TYR SEQRES 20 C 318 PHE ASP ILE MET ASN LEU ALA ASP ARG VAL LYS VAL PRO SEQRES 21 C 318 VAL LEU MET SER ILE GLY LEU ILE ASP LYS VAL THR PRO SEQRES 22 C 318 PRO SER THR VAL PHE ALA ALA TYR ASN HIS LEU GLU THR SEQRES 23 C 318 LYS LYS GLU LEU LYS VAL TYR ARG TYR PHE GLY HIS GLU SEQRES 24 C 318 TYR ILE PRO ALA PHE GLN THR GLU LYS LEU ALA PHE PHE SEQRES 25 C 318 LYS GLN HIS LEU LYS GLY SEQRES 1 H 318 MET GLN LEU PHE ASP LEU PRO LEU ASP GLN LEU GLN THR SEQRES 2 H 318 TYR LYS PRO GLU LYS THR ALA PRO LYS ASP PHE SER GLU SEQRES 3 H 318 PHE TRP LYS LEU SER LEU GLU GLU LEU ALA LYS VAL GLN SEQRES 4 H 318 ALA GLU PRO ASP LEU GLN PRO VAL ASP TYR PRO ALA ASP SEQRES 5 H 318 GLY VAL LYS VAL TYR ARG LEU THR TYR LYS SER PHE GLY SEQRES 6 H 318 ASN ALA ARG ILE THR GLY TRP TYR ALA VAL PRO ASP LYS SEQRES 7 H 318 GLU GLY PRO HIS PRO ALA ILE VAL LYS TYR HIS GLY TYR SEQRES 8 H 318 ASN ALA SER TYR ASP GLY GLU ILE HIS GLU MET VAL ASN SEQRES 9 H 318 TRP ALA LEU HIS GLY TYR ALA THR PHE GLY MET LEU VAL SEQRES 10 H 318 ARG GLY GLN GLN SER SER GLU ASP THR SER ILE SER PRO SEQRES 11 H 318 HIS GLY HIS ALA LEU GLY TRP MET THR LYS GLY ILE LEU SEQRES 12 H 318 ASP LYS ASP THR TYR TYR TYR ARG GLY VAL TYR LEU ASP SEQRES 13 H 318 ALA VAL ARG ALA LEU GLU VAL ILE SER SER PHE ASP GLU SEQRES 14 H 318 VAL ASP GLU THR ARG ILE GLY VAL THR GLY GLY ALA GLN SEQRES 15 H 318 GLY GLY GLY LEU THR ILE ALA ALA ALA ALA LEU SER ASP SEQRES 16 H 318 ILE PRO LYS ALA ALA VAL ALA ASP TYR PRO TYR LEU SER SEQRES 17 H 318 ASN PHE GLU ARG ALA ILE ASP VAL ALA LEU GLU GLU PRO SEQRES 18 H 318 TYR LEU GLU ILE ASN SER PHE PHE ARG ARG ASN GLY SER SEQRES 19 H 318 PRO GLU THR GLU VAL GLN ALA MET LYS THR LEU SER TYR SEQRES 20 H 318 PHE ASP ILE MET ASN LEU ALA ASP ARG VAL LYS VAL PRO SEQRES 21 H 318 VAL LEU MET SER ILE GLY LEU ILE ASP LYS VAL THR PRO SEQRES 22 H 318 PRO SER THR VAL PHE ALA ALA TYR ASN HIS LEU GLU THR SEQRES 23 H 318 LYS LYS GLU LEU LYS VAL TYR ARG TYR PHE GLY HIS GLU SEQRES 24 H 318 TYR ILE PRO ALA PHE GLN THR GLU LYS LEU ALA PHE PHE SEQRES 25 H 318 LYS GLN HIS LEU LYS GLY HET ACT C1318 4 HET ACT H1318 4 HETNAM ACT ACETATE ION FORMUL 3 ACT 2(C2 H3 O2 1-) FORMUL 5 HOH *563(H2 O) HELIX 1 1 PRO C 7 GLN C 12 1 6 HELIX 2 2 ASP C 23 LYS C 37 1 15 HELIX 3 3 PHE C 64 ASN C 66 5 3 HELIX 4 4 TYR C 95 GLY C 97 5 3 HELIX 5 5 GLU C 98 HIS C 108 1 11 HELIX 6 6 TYR C 148 SER C 166 1 19 HELIX 7 7 ALA C 181 SER C 194 1 14 HELIX 8 8 ASN C 209 ALA C 217 1 9 HELIX 9 9 TYR C 222 ASN C 232 1 11 HELIX 10 10 SER C 234 TYR C 247 1 14 HELIX 11 11 ASP C 249 ALA C 254 1 6 HELIX 12 12 ASP C 255 VAL C 257 5 3 HELIX 13 13 PRO C 273 LEU C 284 1 12 HELIX 14 14 ILE C 301 HIS C 315 1 15 HELIX 15 15 PRO H 7 THR H 13 1 7 HELIX 16 16 ASP H 23 LYS H 37 1 15 HELIX 17 17 PHE H 64 ASN H 66 5 3 HELIX 18 18 TYR H 95 GLY H 97 5 3 HELIX 19 19 GLU H 98 HIS H 108 1 11 HELIX 20 20 TYR H 148 SER H 166 1 19 HELIX 21 21 ALA H 181 SER H 194 1 14 HELIX 22 22 ASN H 209 ALA H 217 1 9 HELIX 23 23 TYR H 222 ASN H 232 1 11 HELIX 24 24 SER H 234 TYR H 247 1 14 HELIX 25 25 ASP H 249 ALA H 254 1 6 HELIX 26 26 ASP H 255 VAL H 257 5 3 HELIX 27 27 PRO H 273 LEU H 284 1 12 HELIX 28 28 ILE H 301 HIS H 315 1 15 SHEET 1 CA 9 ASP C 43 VAL C 47 0 SHEET 2 CA 9 VAL C 54 LYS C 62 -1 O VAL C 56 N VAL C 47 SHEET 3 CA 9 ARG C 68 PRO C 76 -1 O ILE C 69 N TYR C 61 SHEET 4 CA 9 ALA C 111 MET C 115 -1 O THR C 112 N ALA C 74 SHEET 5 CA 9 HIS C 82 TYR C 88 1 O PRO C 83 N ALA C 111 SHEET 6 CA 9 VAL C 170 GLY C 180 1 N ASP C 171 O HIS C 82 SHEET 7 CA 9 ALA C 199 ASP C 203 1 O ALA C 199 N VAL C 177 SHEET 8 CA 9 VAL C 261 GLY C 266 1 O LEU C 262 N ALA C 202 SHEET 9 CA 9 LYS C 288 TYR C 293 1 O GLU C 289 N MET C 263 SHEET 1 HA 9 ASP H 43 VAL H 47 0 SHEET 2 HA 9 VAL H 54 SER H 63 -1 O VAL H 56 N VAL H 47 SHEET 3 HA 9 ALA H 67 PRO H 76 -1 O ALA H 67 N SER H 63 SHEET 4 HA 9 ALA H 111 MET H 115 -1 O THR H 112 N ALA H 74 SHEET 5 HA 9 HIS H 82 TYR H 88 1 O PRO H 83 N ALA H 111 SHEET 6 HA 9 VAL H 170 GLY H 180 1 N ASP H 171 O HIS H 82 SHEET 7 HA 9 ALA H 199 ASP H 203 1 O ALA H 199 N VAL H 177 SHEET 8 HA 9 VAL H 261 GLY H 266 1 O LEU H 262 N ALA H 202 SHEET 9 HA 9 LYS H 288 TYR H 293 1 O GLU H 289 N MET H 263 CISPEP 1 GLY C 80 PRO C 81 0 1.84 CISPEP 2 GLU C 220 PRO C 221 0 2.05 CISPEP 3 GLY H 80 PRO H 81 0 -4.37 CISPEP 4 GLU H 220 PRO H 221 0 3.25 SITE 1 AC1 7 GLY C 90 TYR C 91 ALA C 181 GLN C 182 SITE 2 AC1 7 TYR C 206 PRO C 221 HIS C 298 SITE 1 AC2 6 GLY H 90 TYR H 91 ALA H 181 GLN H 182 SITE 2 AC2 6 HIS H 298 HOH H2274 CRYST1 157.167 157.170 132.098 90.00 90.00 120.00 H 3 2 36 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006363 0.003673 0.000000 0.00000 SCALE2 0.000000 0.007347 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007570 0.00000 MTRIX1 1 0.991000 0.133000 0.000000 -11.98389 1 MTRIX2 1 0.133000 -0.991000 0.003000 180.54744 1 MTRIX3 1 0.001000 -0.003000 -1.000000 110.41402 1