HEADER SIGNALLING 14-MAR-03 1ODV TITLE PHOTOACTIVE YELLOW PROTEIN 1-25 DELETION MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOTOACTIVE YELLOW PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 26-125; COMPND 5 SYNONYM: PYP; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: P-COUMARIC ACID SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ECTOTHIORHODOSPIRA HALOPHILA; SOURCE 3 ORGANISM_TAXID: 1053; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SIGNALLING, PHOTOACTIVITY, P-COUMARIC ACID EXPDTA X-RAY DIFFRACTION AUTHOR J.VREEDE,M.A.VAN DER HORST,K.J.HELLINGWERF,W.CRIELAARD,D.M.F.VAN AUTHOR 2 AALTEN REVDAT 5 13-DEC-23 1ODV 1 REMARK REVDAT 4 22-MAY-19 1ODV 1 REMARK LINK REVDAT 3 24-FEB-09 1ODV 1 VERSN REVDAT 2 03-MAY-05 1ODV 1 JRNL REVDAT 1 18-MAR-03 1ODV 0 JRNL AUTH J.VREEDE,M.A.VAN DER HORST,K.J.HELLINGWERF,W.CRIELAARD, JRNL AUTH 2 D.M.F.VAN AALTEN JRNL TITL PAS DOMAINS.COMMON STRUCTURE AND COMMON FLEXIBILITY JRNL REF J.BIOL.CHEM. V. 278 18434 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12639952 JRNL DOI 10.1074/JBC.M301701200 REMARK 2 REMARK 2 RESOLUTION. 1.14 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.14 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 17.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 3 CROSS-VALIDATION METHOD : FREE R-VALUE REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.147 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.147 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : 0.000 REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1096 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 74065 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1576 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 364 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : 1919.0 REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : 1459.0 REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : 7 REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : 17869 REMARK 3 NUMBER OF RESTRAINTS : 21180 REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 ANGLE DISTANCES (A) : 0.027 REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : 0.000 REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : 0.030 REMARK 3 ZERO CHIRAL VOLUMES (A**3) : 0.063 REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : 0.067 REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : 0.052 REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : 0.005 REMARK 3 SIMILAR ADP COMPONENTS (A**2) : 0.032 REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : 0.060 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-2 REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : ENGH AND HUBER REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ODV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 14-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1290012378. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 299780 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.140 REMARK 200 RESOLUTION RANGE LOW (A) : 17.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.06000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.14 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.2 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.21700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHELX REMARK 200 STARTING MODEL: PDB ENTRY 2PHY REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS WERE GROWN BY EQUILIBRATION REMARK 280 OF 1 ML OF 30 MG/ML PROTEIN WITH 1 ML OF MOTHER LIQUOR (1.8 M REMARK 280 AMMONIUM SULPHATE, 10 MM COCL[2], 100 MM MES PH 6.5) AGAINST A 1 REMARK 280 ML RESERVOIR OF MOTHER LIQUOR. CRYSTALS APPEARED AFTER 2-3 DAYS REMARK 280 A LARGEST DIMENSION OF 0.4 MM., PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 31.72650 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 41.28300 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 41.28300 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 47.58975 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 41.28300 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 41.28300 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 15.86325 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 41.28300 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.28300 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 47.58975 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 41.28300 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.28300 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 15.86325 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 31.72650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2106 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2178 LIES ON A SPECIAL POSITION. REMARK 400 REMARK 400 COMPOUND REMARK 400 PHOTOACTIVE BLUE-LIGHT PROTEIN THAT PROBABLY FUNCTIONS AS A REMARK 400 PHOTORECEPTOR FOR A NEGATIVE PHOTOTAXIS RESPONSE. REMARK 400 COVALENTLY BINDS A 4-HYDROXYCINNAMYL (P-COUMARIC ACID) REMARK 400 CHOROMOPHORE VIA A THIOESTER LINKAGE. REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 78 CD CE NZ REMARK 480 GLU A 81 C CD REMARK 480 ASN A 87 CG OD1 ND2 REMARK 480 LYS A 104 CG CD CE NZ REMARK 480 LYS A 106 CD CE NZ REMARK 480 LYS A 111 CE NZ REMARK 480 LEU A 113 CB CG CD1 CD2 REMARK 480 LYS A 123 CD CE NZ REMARK 480 VAL A 125 O OXT REMARK 480 LYS B 55 CD CE NZ REMARK 480 LYS B 60 CE NZ REMARK 480 LYS B 104 NZ REMARK 480 LYS B 106 CD CE NZ REMARK 480 ASP B 116 CG OD1 OD2 REMARK 480 LYS B 123 CD CE NZ REMARK 480 VAL B 125 O OXT REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NZ LYS A 78 O HOH A 2098 2.01 REMARK 500 CE MET A 91 CE LYS A 106 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PHE A 63 CG - CD1 - CE1 ANGL. DEV. = 7.9 DEGREES REMARK 500 MET A 109 CA - CB - CG ANGL. DEV. = 11.3 DEGREES REMARK 500 PHE B 63 CG - CD1 - CE1 ANGL. DEV. = 9.1 DEGREES REMARK 500 ASP B 65 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 HIS B 108 CA - CB - CG ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG B 124 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 65 -61.61 -131.25 REMARK 500 PHE A 75 -82.60 -118.72 REMARK 500 ASN A 89 92.36 -168.94 REMARK 500 PHE B 75 -80.09 -125.87 REMARK 500 ASN B 89 88.60 -168.16 REMARK 500 ASP B 97 10.52 -145.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2015 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH A2056 DISTANCE = 6.08 ANGSTROMS REMARK 525 HOH B2027 DISTANCE = 8.77 ANGSTROMS REMARK 525 HOH B2030 DISTANCE = 6.65 ANGSTROMS REMARK 525 HOH B2048 DISTANCE = 6.74 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HC4 A 126 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HC4 B 126 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1D7E RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVEYELLOW REMARK 900 PROTEIN REMARK 900 RELATED ID: 1F98 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANTT50V REMARK 900 RELATED ID: 1F9I RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEIN MUTANTY42F REMARK 900 RELATED ID: 1GSV RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW REMARK 900 PROTEIN REMARK 900 RELATED ID: 1GSW RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW REMARK 900 PROTEIN G51S MUTANT REMARK 900 RELATED ID: 1GSX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE P65 CRYSTAL FORM OF PHOTOACTIVE YELLOW REMARK 900 PROTEIN G47S/G51S MUTANT REMARK 900 RELATED ID: 1KOU RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE PHOTOACTIVE YELLOW PROTEINRECONSTITUTED REMARK 900 WITH CAFFEIC ACID AT 1. 16 A RESOLUTION REMARK 900 RELATED ID: 1NWZ RELATED DB: PDB REMARK 900 PYP ULTRA-HIGH RESOLUTION STRUCTURE OF A BACTERIALPHOTORECEPTOR REMARK 900 RELATED ID: 2PHY RELATED DB: PDB REMARK 900 PHOTOACTIVE YELLOW PROTEIN, DARK STATE ( UNBLEACHED) 2PHY 3 REMARK 900 RELATED ID: 2PYP RELATED DB: PDB REMARK 900 PHOTOACTIVE YELLOW PROTEIN, PHOTOSTATIONARY STATE, 50%GROUND STATE, REMARK 900 50% BLEACHED REMARK 900 RELATED ID: 2PYR RELATED DB: PDB REMARK 900 PHOTOACTIVE YELLOW PROTEIN, 1 NANOSECOND INTERMEDIATE (287K) REMARK 900 RELATED ID: 3PHY RELATED DB: PDB REMARK 900 PHOTOACTIVE YELLOW PROTEIN, DARK STATE ( UNBLEACHED),SOLUTION REMARK 900 STRUCTURE, NMR, 26 STRUCTURES REMARK 900 RELATED ID: 3PYP RELATED DB: PDB REMARK 900 PHOTOACTIVE YELLOW PROTEIN, CRYOTRAPPED EARLY LIGHT REMARK 900 CYCLEINTERMEDIATE DBREF 1ODV A 26 125 UNP P16113 PYP_ECTHA 26 125 DBREF 1ODV B 26 125 UNP P16113 PYP_ECTHA 26 125 SEQRES 1 A 100 LEU ALA PHE GLY ALA ILE GLN LEU ASP GLY ASP GLY ASN SEQRES 2 A 100 ILE LEU GLN TYR ASN ALA ALA GLU GLY ASP ILE THR GLY SEQRES 3 A 100 ARG ASP PRO LYS GLN VAL ILE GLY LYS ASN PHE PHE LYS SEQRES 4 A 100 ASP VAL ALA PRO CYS THR ASP SER PRO GLU PHE TYR GLY SEQRES 5 A 100 LYS PHE LYS GLU GLY VAL ALA SER GLY ASN LEU ASN THR SEQRES 6 A 100 MET PHE GLU TYR THR PHE ASP TYR GLN MET THR PRO THR SEQRES 7 A 100 LYS VAL LYS VAL HIS MET LYS LYS ALA LEU SER GLY ASP SEQRES 8 A 100 SER TYR TRP VAL PHE VAL LYS ARG VAL SEQRES 1 B 100 LEU ALA PHE GLY ALA ILE GLN LEU ASP GLY ASP GLY ASN SEQRES 2 B 100 ILE LEU GLN TYR ASN ALA ALA GLU GLY ASP ILE THR GLY SEQRES 3 B 100 ARG ASP PRO LYS GLN VAL ILE GLY LYS ASN PHE PHE LYS SEQRES 4 B 100 ASP VAL ALA PRO CYS THR ASP SER PRO GLU PHE TYR GLY SEQRES 5 B 100 LYS PHE LYS GLU GLY VAL ALA SER GLY ASN LEU ASN THR SEQRES 6 B 100 MET PHE GLU TYR THR PHE ASP TYR GLN MET THR PRO THR SEQRES 7 B 100 LYS VAL LYS VAL HIS MET LYS LYS ALA LEU SER GLY ASP SEQRES 8 B 100 SER TYR TRP VAL PHE VAL LYS ARG VAL HET HC4 A 126 11 HET HC4 B 126 11 HETNAM HC4 4'-HYDROXYCINNAMIC ACID HETSYN HC4 PARA-COUMARIC ACID FORMUL 3 HC4 2(C9 H8 O3) FORMUL 5 HOH *364(H2 O) HELIX 1 1 ASN A 43 GLY A 51 1 9 HELIX 2 2 ASP A 53 ILE A 58 1 6 HELIX 3 3 LEU A 26 VAL A 66 1 41 HELIX 4 4 ALA A 67 ASP A 71 5 5 HELIX 5 5 PHE A 75 GLY A 86 1 12 HELIX 6 6 ASN B 43 GLY B 51 1 9 HELIX 7 7 LEU A 26 VAL B 66 1 41 HELIX 8 8 ALA B 67 ASP B 71 5 5 HELIX 9 9 PHE B 75 SER B 85 1 11 SHEET 1 AA 5 ILE A 39 TYR A 42 0 SHEET 2 AA 5 GLY A 29 LEU A 33 -1 O GLN A 32 N LEU A 40 SHEET 3 AA 5 TYR A 118 ARG A 124 -1 O TYR A 118 N LEU A 33 SHEET 4 AA 5 THR A 103 LYS A 111 -1 O LYS A 106 N LYS A 123 SHEET 5 AA 5 ASN A 89 PHE A 96 -1 O THR A 90 N MET A 109 SHEET 1 BA 5 ILE B 39 TYR B 42 0 SHEET 2 BA 5 GLY B 29 LEU B 33 -1 O GLN B 32 N LEU B 40 SHEET 3 BA 5 TYR B 118 ARG B 124 -1 O TYR B 118 N LEU B 33 SHEET 4 BA 5 THR B 103 LYS B 111 -1 O LYS B 106 N LYS B 123 SHEET 5 BA 5 ASN B 89 PHE B 96 -1 O THR B 90 N MET B 109 LINK SG CYS A 69 C1 HC4 A 126 1555 1555 1.77 LINK SG CYS B 69 C1 HC4 B 126 1555 1555 1.78 SITE 1 AC1 10 ILE A 31 TYR A 42 GLU A 46 THR A 50 SITE 2 AC1 10 ARG A 52 ALA A 67 PRO A 68 CYS A 69 SITE 3 AC1 10 PHE A 96 TYR A 98 SITE 1 AC2 11 ILE B 31 TYR B 42 GLU B 46 THR B 50 SITE 2 AC2 11 ARG B 52 PHE B 62 ALA B 67 PRO B 68 SITE 3 AC2 11 CYS B 69 PHE B 96 TYR B 98 CRYST1 82.566 82.566 63.453 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012111 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012111 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015760 0.00000