data_1ODY # _entry.id 1ODY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ODY pdb_00001ody 10.2210/pdb1ody/pdb WWPDB D_1000175441 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ODY _pdbx_database_status.recvd_initial_deposition_date 1998-07-13 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kervinen, J.' 1 'Lubkowski, J.' 2 'Zdanov, A.' 3 'Wlodawer, A.' 4 'Gustchina, A.' 5 # _citation.id primary _citation.title ;Toward a universal inhibitor of retroviral proteases: comparative analysis of the interactions of LP-130 complexed with proteases from HIV-1, FIV, and EIAV. ; _citation.journal_abbrev 'Protein Sci.' _citation.journal_volume 7 _citation.page_first 2314 _citation.page_last 2323 _citation.year 1998 _citation.journal_id_ASTM PRCIEI _citation.country US _citation.journal_id_ISSN 0961-8368 _citation.journal_id_CSD 0795 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9827997 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kervinen, J.' 1 ? primary 'Lubkowski, J.' 2 ? primary 'Zdanov, A.' 3 ? primary 'Bhatt, D.' 4 ? primary 'Dunn, B.M.' 5 ? primary 'Hui, K.Y.' 6 ? primary 'Powell, D.J.' 7 ? primary 'Kay, J.' 8 ? primary 'Wlodawer, A.' 9 ? primary 'Gustchina, A.' 10 ? # _cell.entry_id 1ODY _cell.length_a 62.900 _cell.length_b 62.900 _cell.length_c 83.310 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ODY _symmetry.space_group_name_H-M 'P 61' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 169 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HIV-1 PROTEASE' 10703.613 2 3.4.23.16 ? ? ? 2 non-polymer syn ;4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE ; 794.978 1 ? ? ? ? 3 water nat water 18.015 145 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'HIV-1 PR, RETROPEPSIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGAWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_seq_one_letter_code_can ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGAWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 PRO n 1 2 GLN n 1 3 VAL n 1 4 THR n 1 5 LEU n 1 6 TRP n 1 7 GLN n 1 8 ARG n 1 9 PRO n 1 10 LEU n 1 11 VAL n 1 12 THR n 1 13 ILE n 1 14 LYS n 1 15 ILE n 1 16 GLY n 1 17 GLY n 1 18 GLN n 1 19 LEU n 1 20 LYS n 1 21 GLU n 1 22 ALA n 1 23 LEU n 1 24 LEU n 1 25 ASP n 1 26 THR n 1 27 GLY n 1 28 ALA n 1 29 ASP n 1 30 ASP n 1 31 THR n 1 32 VAL n 1 33 LEU n 1 34 GLU n 1 35 GLU n 1 36 MET n 1 37 SER n 1 38 LEU n 1 39 PRO n 1 40 GLY n 1 41 ALA n 1 42 TRP n 1 43 LYS n 1 44 PRO n 1 45 LYS n 1 46 MET n 1 47 ILE n 1 48 GLY n 1 49 GLY n 1 50 ILE n 1 51 GLY n 1 52 GLY n 1 53 PHE n 1 54 ILE n 1 55 LYS n 1 56 VAL n 1 57 ARG n 1 58 GLN n 1 59 TYR n 1 60 ASP n 1 61 GLN n 1 62 ILE n 1 63 LEU n 1 64 ILE n 1 65 GLU n 1 66 ILE n 1 67 CYS n 1 68 GLY n 1 69 HIS n 1 70 LYS n 1 71 ALA n 1 72 ILE n 1 73 GLY n 1 74 THR n 1 75 VAL n 1 76 LEU n 1 77 VAL n 1 78 GLY n 1 79 PRO n 1 80 THR n 1 81 PRO n 1 82 VAL n 1 83 ASN n 1 84 ILE n 1 85 ILE n 1 86 GLY n 1 87 ARG n 1 88 ASN n 1 89 LEU n 1 90 LEU n 1 91 THR n 1 92 GLN n 1 93 ILE n 1 94 GLY n 1 95 CYS n 1 96 THR n 1 97 LEU n 1 98 ASN n 1 99 PHE n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Lentivirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species 'Human immunodeficiency virus 1' _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'HIV-1 M:B_HXB2R' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 11706 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain HXB2 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name PIR _struct_ref.db_code S63716 _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession S63716 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;PQVTLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMSLPGRWKPKMIGGIGGFIKVRQYDQILIEICGHKAIGTVLVGPT PVNIIGRNLLTQIGCTLNF ; _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ODY A 1 ? 99 ? S63716 1 ? 99 ? 1 99 2 1 1ODY B 1 ? 99 ? S63716 1 ? 99 ? 1 99 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1ODY ALA A 41 ? PIR S63716 ARG 41 conflict 41 1 2 1ODY ALA B 41 ? PIR S63716 ARG 41 conflict 41 2 2 1ODY MET B 46 ? PIR S63716 MET 46 conflict 46 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LP1 non-polymer . ;4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE ; ? 'C45 H58 N6 O7' 794.978 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ODY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.22 _exptl_crystal.density_percent_sol 44.62 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.2 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 6.2' # _diffrn.id 1 _diffrn.ambient_temp 293 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MACSCIENCE _diffrn_detector.pdbx_collection_date 1997-07-11 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'NI FILTER' _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ENRAF-NONIUS FR591' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1ODY _reflns.observed_criterion_sigma_I 1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 2.0 _reflns.number_obs 12082 _reflns.number_all ? _reflns.percent_possible_obs 95.0 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.7 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.07 _reflns_shell.percent_possible_all 85.1 _reflns_shell.Rmerge_I_obs 0.429 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1ODY _refine.ls_number_reflns_obs 11058 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3. _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 2.0 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.167 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1ODX' _refine.pdbx_method_to_determine_struct 'RIGID BODY REFINEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1507 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 58 _refine_hist.number_atoms_solvent 145 _refine_hist.number_atoms_total 1710 _refine_hist.d_res_high 2.0 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function p_bond_d 0.021 0.020 ? ? 'X-RAY DIFFRACTION' ? p_angle_d 0.055 0.035 ? ? 'X-RAY DIFFRACTION' ? p_angle_deg ? ? ? ? 'X-RAY DIFFRACTION' ? p_planar_d 0.062 0.050 ? ? 'X-RAY DIFFRACTION' ? p_hb_or_metal_coord ? ? ? ? 'X-RAY DIFFRACTION' ? p_mcbond_it 1.514 1.500 ? ? 'X-RAY DIFFRACTION' ? p_mcangle_it 2.455 2.000 ? ? 'X-RAY DIFFRACTION' ? p_scbond_it 3.863 3.000 ? ? 'X-RAY DIFFRACTION' ? p_scangle_it 5.638 4.000 ? ? 'X-RAY DIFFRACTION' ? p_plane_restr 0.016 0.022 ? ? 'X-RAY DIFFRACTION' ? p_chiral_restr 0.221 0.130 ? ? 'X-RAY DIFFRACTION' ? p_singtor_nbd 0.231 0.300 ? ? 'X-RAY DIFFRACTION' ? p_multtor_nbd 0.239 0.300 ? ? 'X-RAY DIFFRACTION' ? p_xhyhbond_nbd ? ? ? ? 'X-RAY DIFFRACTION' ? p_xyhbond_nbd 0.232 0.300 ? ? 'X-RAY DIFFRACTION' ? p_planar_tor 3.0 3.0 ? ? 'X-RAY DIFFRACTION' ? p_staggered_tor 21.4 10.0 ? ? 'X-RAY DIFFRACTION' ? p_orthonormal_tor ? ? ? ? 'X-RAY DIFFRACTION' ? p_transverse_tor 14.9 20.0 ? ? 'X-RAY DIFFRACTION' ? p_special_tor ? ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1ODY _struct.title 'HIV-1 PROTEASE COMPLEXED WITH AN INHIBITOR LP-130' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ODY _struct_keywords.pdbx_keywords 'ASPARTIC PROTEASE' _struct_keywords.text 'ASPARTIC PROTEASE, RETROPEPSIN, RETROVIRUS, HIV, AIDS' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 87 ? LEU A 90 ? ARG A 87 LEU A 90 1 ? 4 HELX_P HELX_P2 2 ARG B 87 ? LEU B 90 ? ARG B 87 LEU B 90 1 ? 4 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 3 ? C ? 4 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 18 ? LEU A 23 ? GLN A 18 LEU A 23 A 2 LEU A 10 ? ILE A 15 ? LEU A 10 ILE A 15 A 3 ILE A 62 ? ILE A 66 ? ILE A 62 ILE A 66 A 4 LYS A 70 ? GLY A 73 ? LYS A 70 GLY A 73 B 1 LYS A 43 ? GLY A 48 ? LYS A 43 GLY A 48 B 2 PHE A 53 ? TYR A 59 ? PHE A 53 TYR A 59 B 3 VAL A 75 ? GLY A 78 ? VAL A 75 GLY A 78 C 1 GLN B 18 ? LEU B 23 ? GLN B 18 LEU B 23 C 2 LEU B 10 ? ILE B 15 ? LEU B 10 ILE B 15 C 3 ILE B 62 ? ILE B 66 ? ILE B 62 ILE B 66 C 4 HIS B 69 ? GLY B 73 ? HIS B 69 GLY B 73 D 1 LYS B 43 ? GLY B 48 ? LYS B 43 GLY B 48 D 2 PHE B 53 ? TYR B 59 ? PHE B 53 TYR B 59 D 3 VAL B 75 ? GLY B 78 ? VAL B 75 GLY B 78 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 18 ? O GLN A 18 N ILE A 15 ? N ILE A 15 A 2 3 O LYS A 14 ? O LYS A 14 N GLU A 65 ? N GLU A 65 A 3 4 O ILE A 62 ? O ILE A 62 N GLY A 73 ? N GLY A 73 B 1 2 O LYS A 43 ? O LYS A 43 N GLN A 58 ? N GLN A 58 B 2 3 O ARG A 57 ? O ARG A 57 N VAL A 77 ? N VAL A 77 C 1 2 O GLN B 18 ? O GLN B 18 N ILE B 15 ? N ILE B 15 C 2 3 O LYS B 14 ? O LYS B 14 N GLU B 65 ? N GLU B 65 C 3 4 O ILE B 62 ? O ILE B 62 N GLY B 73 ? N GLY B 73 D 1 2 O LYS B 43 ? O LYS B 43 N GLN B 58 ? N GLN B 58 D 2 3 O ARG B 57 ? O ARG B 57 N VAL B 77 ? N VAL B 77 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id LP1 _struct_site.pdbx_auth_seq_id 201 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 22 _struct_site.details 'BINDING SITE FOR RESIDUE LP1 A 201' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 22 ARG A 8 ? ARG A 8 . ? 1_555 ? 2 AC1 22 ASP A 25 ? ASP A 25 . ? 1_555 ? 3 AC1 22 GLY A 27 ? GLY A 27 . ? 1_555 ? 4 AC1 22 ALA A 28 ? ALA A 28 . ? 1_555 ? 5 AC1 22 ASP A 29 ? ASP A 29 . ? 1_555 ? 6 AC1 22 ILE A 47 ? ILE A 47 . ? 1_555 ? 7 AC1 22 GLY A 48 ? GLY A 48 . ? 1_555 ? 8 AC1 22 GLY A 49 ? GLY A 49 . ? 1_555 ? 9 AC1 22 ILE A 50 ? ILE A 50 . ? 1_555 ? 10 AC1 22 PRO A 81 ? PRO A 81 . ? 1_555 ? 11 AC1 22 VAL A 82 ? VAL A 82 . ? 1_555 ? 12 AC1 22 ILE A 84 ? ILE A 84 . ? 1_555 ? 13 AC1 22 HOH D . ? HOH A 301 . ? 1_555 ? 14 AC1 22 ASP B 25 ? ASP B 25 . ? 1_555 ? 15 AC1 22 GLY B 27 ? GLY B 27 . ? 1_555 ? 16 AC1 22 ALA B 28 ? ALA B 28 . ? 1_555 ? 17 AC1 22 ASP B 29 ? ASP B 29 . ? 1_555 ? 18 AC1 22 ILE B 47 ? ILE B 47 . ? 1_555 ? 19 AC1 22 GLY B 48 ? GLY B 48 . ? 1_555 ? 20 AC1 22 GLY B 49 ? GLY B 49 . ? 1_555 ? 21 AC1 22 VAL B 82 ? VAL B 82 . ? 1_555 ? 22 AC1 22 HOH E . ? HOH B 440 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ODY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ODY _atom_sites.fract_transf_matrix[1][1] 0.015898 _atom_sites.fract_transf_matrix[1][2] 0.009179 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018358 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012003 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 PRO 1 1 1 PRO PRO A . n A 1 2 GLN 2 2 2 GLN GLN A . n A 1 3 VAL 3 3 3 VAL VAL A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 LEU 5 5 5 LEU LEU A . n A 1 6 TRP 6 6 6 TRP TRP A . n A 1 7 GLN 7 7 7 GLN GLN A . n A 1 8 ARG 8 8 8 ARG ARG A . n A 1 9 PRO 9 9 9 PRO PRO A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 VAL 11 11 11 VAL VAL A . n A 1 12 THR 12 12 12 THR THR A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 LYS 14 14 14 LYS LYS A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 GLN 18 18 18 GLN GLN A . n A 1 19 LEU 19 19 19 LEU LEU A . n A 1 20 LYS 20 20 20 LYS LYS A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 ALA 22 22 22 ALA ALA A . n A 1 23 LEU 23 23 23 LEU LEU A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 ASP 25 25 25 ASP ASP A . n A 1 26 THR 26 26 26 THR THR A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 ALA 28 28 28 ALA ALA A . n A 1 29 ASP 29 29 29 ASP ASP A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 VAL 32 32 32 VAL VAL A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 GLU 34 34 34 GLU GLU A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 MET 36 36 36 MET MET A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 LEU 38 38 38 LEU LEU A . n A 1 39 PRO 39 39 39 PRO PRO A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ALA 41 41 41 ALA ALA A . n A 1 42 TRP 42 42 42 TRP TRP A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 MET 46 46 46 MET MET A . n A 1 47 ILE 47 47 47 ILE ILE A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 GLY 49 49 49 GLY GLY A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 GLY 51 51 51 GLY GLY A . n A 1 52 GLY 52 52 52 GLY GLY A . n A 1 53 PHE 53 53 53 PHE PHE A . n A 1 54 ILE 54 54 54 ILE ILE A . n A 1 55 LYS 55 55 55 LYS LYS A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLN 58 58 58 GLN GLN A . n A 1 59 TYR 59 59 59 TYR TYR A . n A 1 60 ASP 60 60 60 ASP ASP A . n A 1 61 GLN 61 61 61 GLN GLN A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 ILE 64 64 64 ILE ILE A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 ILE 66 66 66 ILE ILE A . n A 1 67 CYS 67 67 67 CYS CYS A . n A 1 68 GLY 68 68 68 GLY GLY A . n A 1 69 HIS 69 69 69 HIS HIS A . n A 1 70 LYS 70 70 70 LYS LYS A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 GLY 73 73 73 GLY GLY A . n A 1 74 THR 74 74 74 THR THR A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 GLY 78 78 78 GLY GLY A . n A 1 79 PRO 79 79 79 PRO PRO A . n A 1 80 THR 80 80 80 THR THR A . n A 1 81 PRO 81 81 81 PRO PRO A . n A 1 82 VAL 82 82 82 VAL VAL A . n A 1 83 ASN 83 83 83 ASN ASN A . n A 1 84 ILE 84 84 84 ILE ILE A . n A 1 85 ILE 85 85 85 ILE ILE A . n A 1 86 GLY 86 86 86 GLY GLY A . n A 1 87 ARG 87 87 87 ARG ARG A . n A 1 88 ASN 88 88 88 ASN ASN A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 THR 91 91 91 THR THR A . n A 1 92 GLN 92 92 92 GLN GLN A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLY 94 94 94 GLY GLY A . n A 1 95 CYS 95 95 95 CYS CYS A . n A 1 96 THR 96 96 96 THR THR A . n A 1 97 LEU 97 97 97 LEU LEU A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 PHE 99 99 99 PHE PHE A . n B 1 1 PRO 1 1 1 PRO PRO B . n B 1 2 GLN 2 2 2 GLN GLN B . n B 1 3 VAL 3 3 3 VAL VAL B . n B 1 4 THR 4 4 4 THR THR B . n B 1 5 LEU 5 5 5 LEU LEU B . n B 1 6 TRP 6 6 6 TRP TRP B . n B 1 7 GLN 7 7 7 GLN GLN B . n B 1 8 ARG 8 8 8 ARG ARG B . n B 1 9 PRO 9 9 9 PRO PRO B . n B 1 10 LEU 10 10 10 LEU LEU B . n B 1 11 VAL 11 11 11 VAL VAL B . n B 1 12 THR 12 12 12 THR THR B . n B 1 13 ILE 13 13 13 ILE ILE B . n B 1 14 LYS 14 14 14 LYS LYS B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 GLY 16 16 16 GLY GLY B . n B 1 17 GLY 17 17 17 GLY GLY B . n B 1 18 GLN 18 18 18 GLN GLN B . n B 1 19 LEU 19 19 19 LEU LEU B . n B 1 20 LYS 20 20 20 LYS LYS B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 ALA 22 22 22 ALA ALA B . n B 1 23 LEU 23 23 23 LEU LEU B . n B 1 24 LEU 24 24 24 LEU LEU B . n B 1 25 ASP 25 25 25 ASP ASP B . n B 1 26 THR 26 26 26 THR THR B . n B 1 27 GLY 27 27 27 GLY GLY B . n B 1 28 ALA 28 28 28 ALA ALA B . n B 1 29 ASP 29 29 29 ASP ASP B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 THR 31 31 31 THR THR B . n B 1 32 VAL 32 32 32 VAL VAL B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 GLU 34 34 34 GLU GLU B . n B 1 35 GLU 35 35 35 GLU GLU B . n B 1 36 MET 36 36 36 MET MET B . n B 1 37 SER 37 37 37 SER SER B . n B 1 38 LEU 38 38 38 LEU LEU B . n B 1 39 PRO 39 39 39 PRO PRO B . n B 1 40 GLY 40 40 40 GLY GLY B . n B 1 41 ALA 41 41 41 ALA ALA B . n B 1 42 TRP 42 42 42 TRP TRP B . n B 1 43 LYS 43 43 43 LYS LYS B . n B 1 44 PRO 44 44 44 PRO PRO B . n B 1 45 LYS 45 45 45 LYS LYS B . n B 1 46 MET 46 46 46 MET ALA B . n B 1 47 ILE 47 47 47 ILE ILE B . n B 1 48 GLY 48 48 48 GLY GLY B . n B 1 49 GLY 49 49 49 GLY GLY B . n B 1 50 ILE 50 50 50 ILE ILE B . n B 1 51 GLY 51 51 51 GLY GLY B . n B 1 52 GLY 52 52 52 GLY GLY B . n B 1 53 PHE 53 53 53 PHE PHE B . n B 1 54 ILE 54 54 54 ILE ILE B . n B 1 55 LYS 55 55 55 LYS LYS B . n B 1 56 VAL 56 56 56 VAL VAL B . n B 1 57 ARG 57 57 57 ARG ARG B . n B 1 58 GLN 58 58 58 GLN GLN B . n B 1 59 TYR 59 59 59 TYR TYR B . n B 1 60 ASP 60 60 60 ASP ASP B . n B 1 61 GLN 61 61 61 GLN GLN B . n B 1 62 ILE 62 62 62 ILE ILE B . n B 1 63 LEU 63 63 63 LEU LEU B . n B 1 64 ILE 64 64 64 ILE ILE B . n B 1 65 GLU 65 65 65 GLU GLU B . n B 1 66 ILE 66 66 66 ILE ILE B . n B 1 67 CYS 67 67 67 CYS CYS B . n B 1 68 GLY 68 68 68 GLY GLY B . n B 1 69 HIS 69 69 69 HIS HIS B . n B 1 70 LYS 70 70 70 LYS LYS B . n B 1 71 ALA 71 71 71 ALA ALA B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 GLY 73 73 73 GLY GLY B . n B 1 74 THR 74 74 74 THR THR B . n B 1 75 VAL 75 75 75 VAL VAL B . n B 1 76 LEU 76 76 76 LEU LEU B . n B 1 77 VAL 77 77 77 VAL VAL B . n B 1 78 GLY 78 78 78 GLY GLY B . n B 1 79 PRO 79 79 79 PRO PRO B . n B 1 80 THR 80 80 80 THR THR B . n B 1 81 PRO 81 81 81 PRO PRO B . n B 1 82 VAL 82 82 82 VAL VAL B . n B 1 83 ASN 83 83 83 ASN ASN B . n B 1 84 ILE 84 84 84 ILE ILE B . n B 1 85 ILE 85 85 85 ILE ILE B . n B 1 86 GLY 86 86 86 GLY GLY B . n B 1 87 ARG 87 87 87 ARG ARG B . n B 1 88 ASN 88 88 88 ASN ASN B . n B 1 89 LEU 89 89 89 LEU LEU B . n B 1 90 LEU 90 90 90 LEU LEU B . n B 1 91 THR 91 91 91 THR THR B . n B 1 92 GLN 92 92 92 GLN GLN B . n B 1 93 ILE 93 93 93 ILE ILE B . n B 1 94 GLY 94 94 94 GLY GLY B . n B 1 95 CYS 95 95 95 CYS CYS B . n B 1 96 THR 96 96 96 THR THR B . n B 1 97 LEU 97 97 97 LEU LEU B . n B 1 98 ASN 98 98 98 ASN ASN B . n B 1 99 PHE 99 99 99 PHE PHE B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 LP1 1 201 201 LP1 LP1 A . D 3 HOH 1 301 301 HOH HOH A . D 3 HOH 2 303 303 HOH HOH A . D 3 HOH 3 305 305 HOH HOH A . D 3 HOH 4 310 310 HOH HOH A . D 3 HOH 5 312 312 HOH HOH A . D 3 HOH 6 314 314 HOH HOH A . D 3 HOH 7 316 316 HOH HOH A . D 3 HOH 8 318 318 HOH HOH A . D 3 HOH 9 319 319 HOH HOH A . D 3 HOH 10 322 322 HOH HOH A . D 3 HOH 11 323 323 HOH HOH A . D 3 HOH 12 324 324 HOH HOH A . D 3 HOH 13 327 327 HOH HOH A . D 3 HOH 14 328 328 HOH HOH A . D 3 HOH 15 329 329 HOH HOH A . D 3 HOH 16 330 330 HOH HOH A . D 3 HOH 17 332 332 HOH HOH A . D 3 HOH 18 336 336 HOH HOH A . D 3 HOH 19 337 337 HOH HOH A . D 3 HOH 20 339 339 HOH HOH A . D 3 HOH 21 340 340 HOH HOH A . D 3 HOH 22 341 341 HOH HOH A . D 3 HOH 23 343 343 HOH HOH A . D 3 HOH 24 344 344 HOH HOH A . D 3 HOH 25 345 345 HOH HOH A . D 3 HOH 26 346 346 HOH HOH A . D 3 HOH 27 353 353 HOH HOH A . D 3 HOH 28 354 354 HOH HOH A . D 3 HOH 29 356 356 HOH HOH A . D 3 HOH 30 357 357 HOH HOH A . D 3 HOH 31 358 358 HOH HOH A . D 3 HOH 32 360 360 HOH HOH A . D 3 HOH 33 362 362 HOH HOH A . D 3 HOH 34 363 363 HOH HOH A . D 3 HOH 35 364 364 HOH HOH A . D 3 HOH 36 365 365 HOH HOH A . D 3 HOH 37 366 366 HOH HOH A . D 3 HOH 38 371 371 HOH HOH A . D 3 HOH 39 372 372 HOH HOH A . D 3 HOH 40 373 373 HOH HOH A . D 3 HOH 41 374 374 HOH HOH A . D 3 HOH 42 380 380 HOH HOH A . D 3 HOH 43 384 384 HOH HOH A . D 3 HOH 44 386 386 HOH HOH A . D 3 HOH 45 387 387 HOH HOH A . D 3 HOH 46 388 388 HOH HOH A . D 3 HOH 47 390 390 HOH HOH A . D 3 HOH 48 392 392 HOH HOH A . D 3 HOH 49 393 393 HOH HOH A . D 3 HOH 50 394 394 HOH HOH A . D 3 HOH 51 395 395 HOH HOH A . D 3 HOH 52 396 396 HOH HOH A . D 3 HOH 53 400 400 HOH HOH A . D 3 HOH 54 401 401 HOH HOH A . D 3 HOH 55 404 404 HOH HOH A . D 3 HOH 56 405 405 HOH HOH A . D 3 HOH 57 407 407 HOH HOH A . D 3 HOH 58 408 408 HOH HOH A . D 3 HOH 59 409 409 HOH HOH A . D 3 HOH 60 410 410 HOH HOH A . D 3 HOH 61 411 411 HOH HOH A . D 3 HOH 62 413 413 HOH HOH A . D 3 HOH 63 414 414 HOH HOH A . D 3 HOH 64 417 417 HOH HOH A . D 3 HOH 65 421 421 HOH HOH A . D 3 HOH 66 422 422 HOH HOH A . D 3 HOH 67 426 426 HOH HOH A . D 3 HOH 68 427 427 HOH HOH A . D 3 HOH 69 428 428 HOH HOH A . D 3 HOH 70 429 429 HOH HOH A . D 3 HOH 71 431 431 HOH HOH A . D 3 HOH 72 432 432 HOH HOH A . D 3 HOH 73 433 433 HOH HOH A . D 3 HOH 74 435 435 HOH HOH A . D 3 HOH 75 438 438 HOH HOH A . D 3 HOH 76 441 441 HOH HOH A . D 3 HOH 77 445 445 HOH HOH A . E 3 HOH 1 302 302 HOH HOH B . E 3 HOH 2 304 304 HOH HOH B . E 3 HOH 3 306 306 HOH HOH B . E 3 HOH 4 307 307 HOH HOH B . E 3 HOH 5 308 308 HOH HOH B . E 3 HOH 6 309 309 HOH HOH B . E 3 HOH 7 311 311 HOH HOH B . E 3 HOH 8 313 313 HOH HOH B . E 3 HOH 9 315 315 HOH HOH B . E 3 HOH 10 317 317 HOH HOH B . E 3 HOH 11 320 320 HOH HOH B . E 3 HOH 12 321 321 HOH HOH B . E 3 HOH 13 325 325 HOH HOH B . E 3 HOH 14 326 326 HOH HOH B . E 3 HOH 15 331 331 HOH HOH B . E 3 HOH 16 333 333 HOH HOH B . E 3 HOH 17 334 334 HOH HOH B . E 3 HOH 18 335 335 HOH HOH B . E 3 HOH 19 338 338 HOH HOH B . E 3 HOH 20 342 342 HOH HOH B . E 3 HOH 21 347 347 HOH HOH B . E 3 HOH 22 348 348 HOH HOH B . E 3 HOH 23 349 349 HOH HOH B . E 3 HOH 24 350 350 HOH HOH B . E 3 HOH 25 351 351 HOH HOH B . E 3 HOH 26 352 352 HOH HOH B . E 3 HOH 27 355 355 HOH HOH B . E 3 HOH 28 359 359 HOH HOH B . E 3 HOH 29 361 361 HOH HOH B . E 3 HOH 30 367 367 HOH HOH B . E 3 HOH 31 368 368 HOH HOH B . E 3 HOH 32 369 369 HOH HOH B . E 3 HOH 33 370 370 HOH HOH B . E 3 HOH 34 375 375 HOH HOH B . E 3 HOH 35 376 376 HOH HOH B . E 3 HOH 36 377 377 HOH HOH B . E 3 HOH 37 378 378 HOH HOH B . E 3 HOH 38 379 379 HOH HOH B . E 3 HOH 39 381 381 HOH HOH B . E 3 HOH 40 382 382 HOH HOH B . E 3 HOH 41 383 383 HOH HOH B . E 3 HOH 42 385 385 HOH HOH B . E 3 HOH 43 389 389 HOH HOH B . E 3 HOH 44 391 391 HOH HOH B . E 3 HOH 45 397 397 HOH HOH B . E 3 HOH 46 398 398 HOH HOH B . E 3 HOH 47 399 399 HOH HOH B . E 3 HOH 48 402 402 HOH HOH B . E 3 HOH 49 403 403 HOH HOH B . E 3 HOH 50 406 406 HOH HOH B . E 3 HOH 51 412 412 HOH HOH B . E 3 HOH 52 415 415 HOH HOH B . E 3 HOH 53 416 416 HOH HOH B . E 3 HOH 54 418 418 HOH HOH B . E 3 HOH 55 419 419 HOH HOH B . E 3 HOH 56 420 420 HOH HOH B . E 3 HOH 57 423 423 HOH HOH B . E 3 HOH 58 424 424 HOH HOH B . E 3 HOH 59 425 425 HOH HOH B . E 3 HOH 60 430 430 HOH HOH B . E 3 HOH 61 434 434 HOH HOH B . E 3 HOH 62 436 436 HOH HOH B . E 3 HOH 63 437 437 HOH HOH B . E 3 HOH 64 439 439 HOH HOH B . E 3 HOH 65 440 440 HOH HOH B . E 3 HOH 66 442 442 HOH HOH B . E 3 HOH 67 443 443 HOH HOH B . E 3 HOH 68 444 444 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 5320 ? 1 MORE -36 ? 1 'SSA (A^2)' 8900 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-02-16 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 PROFFT refinement . ? 2 X-PLOR refinement . ? 3 DENZO 'data reduction' . ? 4 SCALEPACK 'data scaling' . ? 5 X-PLOR phasing . ? 6 # _pdbx_entry_details.entry_id 1ODY _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ;LP-130 (HET ID LP1): ACE-NAL-VAL-STA-ABU-NAL-NH2 WHERE NAL IS NAPHTHYLALANINE, STA IS STATINE, AND ABU IS 2-AMINOBUTYRIC ACID. THE KI VALUE OF LP-130 FOR HIV-1 PR IS 8 NM. ; _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 B _pdbx_validate_close_contact.auth_comp_id_1 ILE _pdbx_validate_close_contact.auth_seq_id_1 50 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 B _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 367 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A LEU 10 ? ? CA A LEU 10 ? ? C A LEU 10 ? ? 96.24 110.20 -13.96 1.90 N 2 1 N A VAL 11 ? ? CA A VAL 11 ? ? CB A VAL 11 ? ? 94.50 111.50 -17.00 2.20 N 3 1 CB A ILE 15 ? ? CA A ILE 15 ? ? C A ILE 15 ? ? 94.86 111.60 -16.74 2.00 N 4 1 CA A LYS 20 ? ? CB A LYS 20 ? ? CG A LYS 20 ? ? 99.78 113.40 -13.62 2.20 N 5 1 CB A ASP 25 ? ? CG A ASP 25 ? ? OD1 A ASP 25 ? ? 126.25 118.30 7.95 0.90 N 6 1 CB A ASP 29 ? ? CG A ASP 29 ? ? OD2 A ASP 29 ? ? 110.88 118.30 -7.42 0.90 N 7 1 CB A GLU 34 ? ? CG A GLU 34 ? ? CD A GLU 34 ? ? 137.78 114.20 23.58 2.70 N 8 1 OE1 A GLU 34 ? ? CD A GLU 34 ? ? OE2 A GLU 34 ? ? 111.54 123.30 -11.76 1.20 N 9 1 OE1 A GLU 65 ? ? CD A GLU 65 ? ? OE2 A GLU 65 ? ? 134.93 123.30 11.63 1.20 N 10 1 CB A HIS 69 ? ? CA A HIS 69 ? ? C A HIS 69 ? ? 97.97 110.40 -12.43 2.00 N 11 1 CB A VAL 82 ? ? CA A VAL 82 ? ? C A VAL 82 ? ? 95.33 111.40 -16.07 1.90 N 12 1 NE A ARG 87 ? ? CZ A ARG 87 ? ? NH2 A ARG 87 ? ? 115.96 120.30 -4.34 0.50 N 13 1 N A CYS 95 ? ? CA A CYS 95 ? ? CB A CYS 95 ? ? 96.56 110.60 -14.04 1.80 N 14 1 N B THR 4 ? ? CA B THR 4 ? ? CB B THR 4 ? ? 121.85 110.30 11.55 1.90 N 15 1 NE B ARG 8 ? ? CZ B ARG 8 ? ? NH1 B ARG 8 ? ? 124.10 120.30 3.80 0.50 N 16 1 N B VAL 11 ? ? CA B VAL 11 ? ? CB B VAL 11 ? ? 97.81 111.50 -13.69 2.20 N 17 1 CB B ILE 15 ? ? CA B ILE 15 ? ? C B ILE 15 ? ? 94.79 111.60 -16.81 2.00 N 18 1 CA B GLU 21 ? ? CB B GLU 21 ? ? CG B GLU 21 ? ? 128.09 113.40 14.69 2.20 N 19 1 CB B ASP 25 ? ? CG B ASP 25 ? ? OD1 B ASP 25 ? ? 123.79 118.30 5.49 0.90 N 20 1 CB B ASP 29 ? ? CG B ASP 29 ? ? OD2 B ASP 29 ? ? 124.44 118.30 6.14 0.90 N 21 1 OE1 B GLU 34 ? ? CD B GLU 34 ? ? OE2 B GLU 34 ? ? 114.22 123.30 -9.08 1.20 N 22 1 CA B LYS 43 ? ? CB B LYS 43 ? ? CG B LYS 43 ? ? 127.50 113.40 14.10 2.20 N 23 1 N B ILE 54 ? ? CA B ILE 54 ? ? CB B ILE 54 ? ? 131.90 110.80 21.10 2.30 N 24 1 CB B VAL 82 ? ? CA B VAL 82 ? ? C B VAL 82 ? ? 97.94 111.40 -13.46 1.90 N 25 1 NE B ARG 87 ? ? CZ B ARG 87 ? ? NH2 B ARG 87 ? ? 116.79 120.30 -3.51 0.50 N 26 1 N B LEU 97 ? ? CA B LEU 97 ? ? CB B LEU 97 ? ? 98.16 110.40 -12.24 2.00 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 34 ? ? -49.63 169.58 2 1 SER A 37 ? ? -66.96 96.72 3 1 PRO A 79 ? ? -87.04 43.08 4 1 PHE B 53 ? ? -103.44 -164.89 5 1 PRO B 79 ? ? -53.74 47.57 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 B MET 46 ? CG ? B MET 46 CG 2 1 Y 1 B MET 46 ? SD ? B MET 46 SD 3 1 Y 1 B MET 46 ? CE ? B MET 46 CE # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ;4-[2-(2-ACETYLAMINO-3-NAPHTALEN-1-YL-PROPIONYLAMINO)-4-METHYL-PENTANOYLAMINO]-3-HYDROXY-6-METHYL-HEPTANOIC ACID [1-(1-CARBAMOYL-2-NAPHTHALEN-1-YL-ETHYLCARBAMOYL)-PROPYL]-AMIDE ; LP1 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1ODX _pdbx_initial_refinement_model.details 'PDB ENTRY 1ODX' #