HEADER TRANSFERASE 03-APR-03 1OF1 TITLE KINETICS AND CRYSTAL STRUCTURE OF THE HERPES SIMPLEX VIRUS TYPE 1 TITLE 2 THYMIDINE KINASE INTERACTING WITH (SOUTH)-METHANOCARBA-THYMIDINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: THYMIDINE KINASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.7.1.21; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HERPES SIMPLEX VIRUS (TYPE 1 / STRAIN 17); SOURCE 3 ORGANISM_TAXID: 10299; SOURCE 4 STRAIN: 17; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, THYMIDINE KINASE, ANTIVIRAL DRUG, ENZYME-PRODRUG GENE, KEYWDS 2 KINASE, DNA SYNTHESIS, ATP-BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.T.CLAUS,P.SCHELLING,G.FOLKERS,V.E.MARQUEZ,L.SCAPOZZA,G.E.SCHULZ REVDAT 5 13-DEC-23 1OF1 1 REMARK REVDAT 4 24-JUL-19 1OF1 1 REMARK REVDAT 3 24-FEB-09 1OF1 1 VERSN REVDAT 2 29-JUL-04 1OF1 1 JRNL REVDAT 1 03-JUN-04 1OF1 0 JRNL AUTH P.SCHELLING,M.T.CLAUS,R.JOHNER,V.E.MARQUEZ,G.E.SCHULZ, JRNL AUTH 2 L.SCAPOZZA JRNL TITL BIOCHEMICAL AND STRUCTURAL CHARACTERIZATION OF JRNL TITL 2 (SOUTH)-METHANOCARBATHYMIDINE THAT SPECIFICALLY INHIBITS JRNL TITL 3 GROWTH OF HERPES SIMPLEX VIRUS TYPE 1 THYMIDINE JRNL TITL 4 KINASE-TRANSDUCED OSTEOSARCOMA CELLS JRNL REF J.BIOL.CHEM. V. 279 32832 2004 JRNL REFN ISSN 0021-9258 JRNL PMID 15163659 JRNL DOI 10.1074/JBC.M313343200 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH K.WILD,T.BOHNER,A.AUBRY,G.FOLKERS,G.E.SCHULZ REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF THYMIDINE KINASE FROM REMARK 1 TITL 2 HERPES SIMPLEX VIRUS TYPE 1 REMARK 1 REF FEBS LETT. V. 368 289 1995 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 7628623 REMARK 1 DOI 10.1016/0014-5793(95)00680-8 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3292353.320 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 52523 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2649 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7877 REMARK 3 BIN R VALUE (WORKING SET) : 0.1980 REMARK 3 BIN FREE R VALUE : 0.2350 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 445 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4737 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 46 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.29000 REMARK 3 B22 (A**2) : 10.97000 REMARK 3 B33 (A**2) : -6.68000 REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : 0.08 REMARK 3 LOW RESOLUTION CUTOFF (A) : 40.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.090 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.850 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.810 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.210 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 5.540 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 50.18 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : SMC.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : SMC.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OF1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 03-APR-03. REMARK 100 THE DEPOSITION ID IS D_1290012202. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : BW7B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.8453 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52523 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.04900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : 0.16600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1E2K REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.21 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 7.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 54.10000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 54.10000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 56.86500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.00500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 56.86500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.00500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 54.10000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 56.86500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.00500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 54.10000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 56.86500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.00500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 TYR A 4 REMARK 465 PRO A 5 REMARK 465 CYS A 6 REMARK 465 HIS A 7 REMARK 465 GLN A 8 REMARK 465 HIS A 9 REMARK 465 ALA A 10 REMARK 465 SER A 11 REMARK 465 ALA A 12 REMARK 465 PHE A 13 REMARK 465 ASP A 14 REMARK 465 GLN A 15 REMARK 465 ALA A 16 REMARK 465 ALA A 17 REMARK 465 ARG A 18 REMARK 465 SER A 19 REMARK 465 ARG A 20 REMARK 465 GLY A 21 REMARK 465 HIS A 22 REMARK 465 ASN A 23 REMARK 465 ASN A 24 REMARK 465 ARG A 25 REMARK 465 ARG A 26 REMARK 465 THR A 27 REMARK 465 ALA A 28 REMARK 465 LEU A 29 REMARK 465 ARG A 30 REMARK 465 PRO A 31 REMARK 465 ARG A 32 REMARK 465 ARG A 33 REMARK 465 GLN A 34 REMARK 465 GLN A 35 REMARK 465 GLU A 36 REMARK 465 ALA A 37 REMARK 465 THR A 38 REMARK 465 GLU A 39 REMARK 465 VAL A 40 REMARK 465 ARG A 41 REMARK 465 PRO A 42 REMARK 465 GLU A 43 REMARK 465 GLN A 44 REMARK 465 LYS A 45 REMARK 465 LEU A 72 REMARK 465 GLY A 73 REMARK 465 SER A 74 REMARK 465 ARG A 75 REMARK 465 GLY A 148 REMARK 465 SER A 149 REMARK 465 SER A 150 REMARK 465 HIS A 151 REMARK 465 ALA A 152 REMARK 465 ALA A 266 REMARK 465 VAL A 267 REMARK 465 PRO A 268 REMARK 465 PRO A 269 REMARK 465 GLN A 270 REMARK 465 GLY A 271 REMARK 465 ALA A 272 REMARK 465 GLU A 273 REMARK 465 PRO A 274 REMARK 465 GLN A 275 REMARK 465 SER A 276 REMARK 465 ASN A 277 REMARK 465 ALA A 278 REMARK 465 ASN A 376 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 TYR B 4 REMARK 465 PRO B 5 REMARK 465 CYS B 6 REMARK 465 HIS B 7 REMARK 465 GLN B 8 REMARK 465 HIS B 9 REMARK 465 ALA B 10 REMARK 465 SER B 11 REMARK 465 ALA B 12 REMARK 465 PHE B 13 REMARK 465 ASP B 14 REMARK 465 GLN B 15 REMARK 465 ALA B 16 REMARK 465 ALA B 17 REMARK 465 ARG B 18 REMARK 465 SER B 19 REMARK 465 ARG B 20 REMARK 465 GLY B 21 REMARK 465 HIS B 22 REMARK 465 ASN B 23 REMARK 465 ASN B 24 REMARK 465 ARG B 25 REMARK 465 ARG B 26 REMARK 465 THR B 27 REMARK 465 ALA B 28 REMARK 465 LEU B 29 REMARK 465 ARG B 30 REMARK 465 PRO B 31 REMARK 465 ARG B 32 REMARK 465 ARG B 33 REMARK 465 GLN B 34 REMARK 465 GLN B 35 REMARK 465 GLU B 36 REMARK 465 ALA B 37 REMARK 465 THR B 38 REMARK 465 GLU B 39 REMARK 465 VAL B 40 REMARK 465 ARG B 41 REMARK 465 PRO B 42 REMARK 465 GLU B 43 REMARK 465 GLN B 44 REMARK 465 LYS B 45 REMARK 465 GLY B 148 REMARK 465 SER B 149 REMARK 465 SER B 150 REMARK 465 HIS B 151 REMARK 465 ALA B 152 REMARK 465 GLN B 221 REMARK 465 ARG B 222 REMARK 465 PRO B 223 REMARK 465 ALA B 266 REMARK 465 VAL B 267 REMARK 465 PRO B 268 REMARK 465 PRO B 269 REMARK 465 GLN B 270 REMARK 465 GLY B 271 REMARK 465 ALA B 272 REMARK 465 GLU B 273 REMARK 465 ASN B 376 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ALA A 375 CA C O CB REMARK 470 ALA B 375 CA C O CB REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 90 -57.49 -133.74 REMARK 500 ARG A 163 155.58 79.27 REMARK 500 LEU A 170 -59.91 -144.22 REMARK 500 SER A 263 -56.08 -120.49 REMARK 500 ARG B 75 -3.61 -57.30 REMARK 500 VAL B 90 -57.09 -130.89 REMARK 500 ARG B 163 151.29 83.68 REMARK 500 LEU B 170 -57.82 -143.25 REMARK 500 ALA B 218 77.31 -63.35 REMARK 500 SER B 263 -37.93 -20.36 REMARK 500 ASN B 277 22.14 -140.48 REMARK 500 ASN B 301 2.22 -68.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCT A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SCT B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1E2H RELATED DB: PDB REMARK 900 THE NUCLEOSIDE BINDING SITE OF HERPES SIMPLEX TYPE 1 THYMIDINE REMARK 900 KINASE ANALYZED BY X-RAY CRYSTALLOGRAPHY REMARK 900 RELATED ID: 1E2I RELATED DB: PDB REMARK 900 THE NUCLEOSIDE BINDING SITE OF HERPES SIMPLEX TYPE 1 THYMIDINE REMARK 900 KINASE ANALYZED BY X-RAY CRYSTALLOGRAPHY REMARK 900 RELATED ID: 1E2J RELATED DB: PDB REMARK 900 THE NUCLEOSIDE BINDING SITE OF HERPES SIMPLEX TYPE 1 THYMIDINE REMARK 900 KINASE ANALYZED BY X-RAY CRYSTALLOGRAPHY REMARK 900 RELATED ID: 1E2K RELATED DB: PDB REMARK 900 KINETICS AND CRYSTAL STRUCTURE OF THE WILD- TYPE AND THE ENGINEERED REMARK 900 Y101F MUTANT OF HERPES SIMPLEX VIRUS TYPE 1 THYMIDINE KINASE REMARK 900 INTERACTING WITH (NORTH)-METHANOCARBA- THYMIDINE REMARK 900 RELATED ID: 1E2L RELATED DB: PDB REMARK 900 KINETICS AND CRYSTAL STRUCTURE OF THE WILD- TYPE AND THEENGINEERED REMARK 900 Y101F MUTANT OF HERPES SIMPLEX VIRUS TYPE 1THYMIDINE KINASE REMARK 900 INTERACTING WITH(NORTH)-METHANOCARBA-THYMIDINE REMARK 900 RELATED ID: 1E2M RELATED DB: PDB REMARK 900 HPT + HMTT REMARK 900 RELATED ID: 1E2N RELATED DB: PDB REMARK 900 HPT + HMTT REMARK 900 RELATED ID: 1E2P RELATED DB: PDB REMARK 900 DHBT REMARK 900 RELATED ID: 1KI2 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE I COMPLEXED WITH GANCICLOVIR REMARK 900 RELATED ID: 1KI3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE I COMPLEXED WITH PENCICLOVIR REMARK 900 RELATED ID: 1KI4 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE I COMPLEXED WITH 5-BROMOTHIENYLDEOXYURIDINE REMARK 900 RELATED ID: 1KI6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE I COMPLEXED WITH A 5-IODOURACIL ANHYDROHEXITOL NUCLEOSIDE REMARK 900 RELATED ID: 1KI7 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE I COMPLEXED WITH 5-IODODEOXYURIDINE REMARK 900 RELATED ID: 1KI8 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS REMARK 900 TYPE I COMPLEXED WITH 5-BROMOVINYLDEOXYURIDINE REMARK 900 RELATED ID: 1QHI RELATED DB: PDB REMARK 900 HERPES SIMPLEX VIRUS TYPE-I THYMIDINE KINASE COMPLEXED WITH A NOVEL REMARK 900 NON-SUBSTRATE INHIBITOR, 9-(4-HYDROXYBUTYL)-N2- PHENYLGUANINE REMARK 900 RELATED ID: 1VTK RELATED DB: PDB REMARK 900 THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 IN COMPLEX WITH REMARK 900 ADP AND DEOXYTHYMIDINE-MONOPHOSPHATE REMARK 900 RELATED ID: 2KI5 RELATED DB: PDB REMARK 900 HERPES SIMPLEX TYPE-1 THYMIDINE KINASE IN COMPLEX WITH THE DRUG REMARK 900 ACICLOVIR AT 1.9A RESOLUTION REMARK 900 RELATED ID: 3VTK RELATED DB: PDB REMARK 900 THYMIDINE KINASE FROM HERPES SIMPLEX VIRUS TYPE 1 IN COMPLEX WITH REMARK 900 ADP AND 5-IODO- DEOXYURIDINE-MONOPHOSPHATE DBREF 1OF1 A 1 376 UNP P03176 KITH_HSV11 1 376 DBREF 1OF1 B 1 376 UNP P03176 KITH_HSV11 1 376 SEQRES 1 A 376 MET ALA SER TYR PRO CYS HIS GLN HIS ALA SER ALA PHE SEQRES 2 A 376 ASP GLN ALA ALA ARG SER ARG GLY HIS ASN ASN ARG ARG SEQRES 3 A 376 THR ALA LEU ARG PRO ARG ARG GLN GLN GLU ALA THR GLU SEQRES 4 A 376 VAL ARG PRO GLU GLN LYS MET PRO THR LEU LEU ARG VAL SEQRES 5 A 376 TYR ILE ASP GLY PRO HIS GLY MET GLY LYS THR THR THR SEQRES 6 A 376 THR GLN LEU LEU VAL ALA LEU GLY SER ARG ASP ASP ILE SEQRES 7 A 376 VAL TYR VAL PRO GLU PRO MET THR TYR TRP ARG VAL LEU SEQRES 8 A 376 GLY ALA SER GLU THR ILE ALA ASN ILE TYR THR THR GLN SEQRES 9 A 376 HIS ARG LEU ASP GLN GLY GLU ILE SER ALA GLY ASP ALA SEQRES 10 A 376 ALA VAL VAL MET THR SER ALA GLN ILE THR MET GLY MET SEQRES 11 A 376 PRO TYR ALA VAL THR ASP ALA VAL LEU ALA PRO HIS ILE SEQRES 12 A 376 GLY GLY GLU ALA GLY SER SER HIS ALA PRO PRO PRO ALA SEQRES 13 A 376 LEU THR LEU ILE PHE ASP ARG HIS PRO ILE ALA ALA LEU SEQRES 14 A 376 LEU CYS TYR PRO ALA ALA ARG TYR LEU MET GLY SER MET SEQRES 15 A 376 THR PRO GLN ALA VAL LEU ALA PHE VAL ALA LEU ILE PRO SEQRES 16 A 376 PRO THR LEU PRO GLY THR ASN ILE VAL LEU GLY ALA LEU SEQRES 17 A 376 PRO GLU ASP ARG HIS ILE ASP ARG LEU ALA LYS ARG GLN SEQRES 18 A 376 ARG PRO GLY GLU ARG LEU ASP LEU ALA MET LEU ALA ALA SEQRES 19 A 376 ILE ARG ARG VAL TYR GLY LEU LEU ALA ASN THR VAL ARG SEQRES 20 A 376 TYR LEU GLN CYS GLY GLY SER TRP ARG GLU ASP TRP GLY SEQRES 21 A 376 GLN LEU SER GLY THR ALA VAL PRO PRO GLN GLY ALA GLU SEQRES 22 A 376 PRO GLN SER ASN ALA GLY PRO ARG PRO HIS ILE GLY ASP SEQRES 23 A 376 THR LEU PHE THR LEU PHE ARG ALA PRO GLU LEU LEU ALA SEQRES 24 A 376 PRO ASN GLY ASP LEU TYR ASN VAL PHE ALA TRP ALA LEU SEQRES 25 A 376 ASP VAL LEU ALA LYS ARG LEU ARG SER MET HIS VAL PHE SEQRES 26 A 376 ILE LEU ASP TYR ASP GLN SER PRO ALA GLY CYS ARG ASP SEQRES 27 A 376 ALA LEU LEU GLN LEU THR SER GLY MET VAL GLN THR HIS SEQRES 28 A 376 VAL THR THR PRO GLY SER ILE PRO THR ILE CYS ASP LEU SEQRES 29 A 376 ALA ARG THR PHE ALA ARG GLU MET GLY GLU ALA ASN SEQRES 1 B 376 MET ALA SER TYR PRO CYS HIS GLN HIS ALA SER ALA PHE SEQRES 2 B 376 ASP GLN ALA ALA ARG SER ARG GLY HIS ASN ASN ARG ARG SEQRES 3 B 376 THR ALA LEU ARG PRO ARG ARG GLN GLN GLU ALA THR GLU SEQRES 4 B 376 VAL ARG PRO GLU GLN LYS MET PRO THR LEU LEU ARG VAL SEQRES 5 B 376 TYR ILE ASP GLY PRO HIS GLY MET GLY LYS THR THR THR SEQRES 6 B 376 THR GLN LEU LEU VAL ALA LEU GLY SER ARG ASP ASP ILE SEQRES 7 B 376 VAL TYR VAL PRO GLU PRO MET THR TYR TRP ARG VAL LEU SEQRES 8 B 376 GLY ALA SER GLU THR ILE ALA ASN ILE TYR THR THR GLN SEQRES 9 B 376 HIS ARG LEU ASP GLN GLY GLU ILE SER ALA GLY ASP ALA SEQRES 10 B 376 ALA VAL VAL MET THR SER ALA GLN ILE THR MET GLY MET SEQRES 11 B 376 PRO TYR ALA VAL THR ASP ALA VAL LEU ALA PRO HIS ILE SEQRES 12 B 376 GLY GLY GLU ALA GLY SER SER HIS ALA PRO PRO PRO ALA SEQRES 13 B 376 LEU THR LEU ILE PHE ASP ARG HIS PRO ILE ALA ALA LEU SEQRES 14 B 376 LEU CYS TYR PRO ALA ALA ARG TYR LEU MET GLY SER MET SEQRES 15 B 376 THR PRO GLN ALA VAL LEU ALA PHE VAL ALA LEU ILE PRO SEQRES 16 B 376 PRO THR LEU PRO GLY THR ASN ILE VAL LEU GLY ALA LEU SEQRES 17 B 376 PRO GLU ASP ARG HIS ILE ASP ARG LEU ALA LYS ARG GLN SEQRES 18 B 376 ARG PRO GLY GLU ARG LEU ASP LEU ALA MET LEU ALA ALA SEQRES 19 B 376 ILE ARG ARG VAL TYR GLY LEU LEU ALA ASN THR VAL ARG SEQRES 20 B 376 TYR LEU GLN CYS GLY GLY SER TRP ARG GLU ASP TRP GLY SEQRES 21 B 376 GLN LEU SER GLY THR ALA VAL PRO PRO GLN GLY ALA GLU SEQRES 22 B 376 PRO GLN SER ASN ALA GLY PRO ARG PRO HIS ILE GLY ASP SEQRES 23 B 376 THR LEU PHE THR LEU PHE ARG ALA PRO GLU LEU LEU ALA SEQRES 24 B 376 PRO ASN GLY ASP LEU TYR ASN VAL PHE ALA TRP ALA LEU SEQRES 25 B 376 ASP VAL LEU ALA LYS ARG LEU ARG SER MET HIS VAL PHE SEQRES 26 B 376 ILE LEU ASP TYR ASP GLN SER PRO ALA GLY CYS ARG ASP SEQRES 27 B 376 ALA LEU LEU GLN LEU THR SER GLY MET VAL GLN THR HIS SEQRES 28 B 376 VAL THR THR PRO GLY SER ILE PRO THR ILE CYS ASP LEU SEQRES 29 B 376 ALA ARG THR PHE ALA ARG GLU MET GLY GLU ALA ASN HET SCT A 400 18 HET SO4 A 600 5 HET SCT B 500 18 HET SO4 B 700 5 HETNAM SCT (SOUTH)-METHANOCARBA-THYMIDINE HETNAM SO4 SULFATE ION FORMUL 3 SCT 2(C12 H16 N2 O4) FORMUL 4 SO4 2(O4 S 2-) FORMUL 7 HOH *340(H2 O) HELIX 1 1 GLY A 61 ALA A 71 1 11 HELIX 2 2 PRO A 84 VAL A 90 1 7 HELIX 3 3 GLU A 95 GLN A 109 1 15 HELIX 4 4 SER A 113 ALA A 140 1 28 HELIX 5 5 HIS A 164 LEU A 170 1 7 HELIX 6 6 LEU A 170 MET A 179 1 10 HELIX 7 7 THR A 183 LEU A 193 1 11 HELIX 8 8 PRO A 209 ARG A 220 1 12 HELIX 9 9 ASP A 228 CYS A 251 1 24 HELIX 10 10 SER A 254 TRP A 259 1 6 HELIX 11 11 GLY A 260 SER A 263 5 4 HELIX 12 12 HIS A 283 THR A 287 5 5 HELIX 13 13 THR A 287 ARG A 293 5 7 HELIX 14 14 ALA A 294 LEU A 297 5 4 HELIX 15 15 TYR A 305 SER A 321 1 17 HELIX 16 16 SER A 332 THR A 344 1 13 HELIX 17 17 SER A 345 MET A 347 5 3 HELIX 18 18 GLY A 356 GLY A 373 1 18 HELIX 19 19 GLY B 61 ALA B 71 1 11 HELIX 20 20 PRO B 84 VAL B 90 1 7 HELIX 21 21 GLU B 95 GLN B 109 1 15 HELIX 22 22 SER B 113 ALA B 140 1 28 HELIX 23 23 HIS B 164 LEU B 170 1 7 HELIX 24 24 LEU B 170 MET B 179 1 10 HELIX 25 25 THR B 183 LEU B 193 1 11 HELIX 26 26 PRO B 209 ALA B 218 1 10 HELIX 27 27 ASP B 228 CYS B 251 1 24 HELIX 28 28 SER B 254 TRP B 259 1 6 HELIX 29 29 GLY B 260 LEU B 262 5 3 HELIX 30 30 HIS B 283 THR B 287 5 5 HELIX 31 31 THR B 287 ARG B 293 5 7 HELIX 32 32 ALA B 294 LEU B 297 5 4 HELIX 33 33 TYR B 305 SER B 321 1 17 HELIX 34 34 SER B 332 SER B 345 1 14 HELIX 35 35 GLY B 356 GLY B 373 1 18 SHEET 1 AA 5 ILE A 78 VAL A 81 0 SHEET 2 AA 5 LEU A 157 ASP A 162 1 O THR A 158 N VAL A 79 SHEET 3 AA 5 THR A 48 ILE A 54 1 O LEU A 50 N LEU A 159 SHEET 4 AA 5 THR A 350 VAL A 352 -1 O THR A 350 N LEU A 49 SHEET 5 AA 5 ILE A 143 GLU A 146 -1 N GLY A 144 O HIS A 351 SHEET 1 AB 5 ILE A 78 VAL A 81 0 SHEET 2 AB 5 LEU A 157 ASP A 162 1 O THR A 158 N VAL A 79 SHEET 3 AB 5 THR A 48 ILE A 54 1 O LEU A 50 N LEU A 159 SHEET 4 AB 5 ASN A 202 ALA A 207 1 O ASN A 202 N TYR A 53 SHEET 5 AB 5 HIS A 323 ASP A 328 1 O HIS A 323 N ILE A 203 SHEET 1 BA 5 ILE B 78 VAL B 81 0 SHEET 2 BA 5 LEU B 157 ASP B 162 1 O THR B 158 N VAL B 79 SHEET 3 BA 5 THR B 48 ASP B 55 1 O LEU B 50 N LEU B 159 SHEET 4 BA 5 THR B 350 VAL B 352 -1 O THR B 350 N LEU B 49 SHEET 5 BA 5 ILE B 143 GLU B 146 -1 N GLY B 144 O HIS B 351 SHEET 1 BB 5 ILE B 78 VAL B 81 0 SHEET 2 BB 5 LEU B 157 ASP B 162 1 O THR B 158 N VAL B 79 SHEET 3 BB 5 THR B 48 ASP B 55 1 O LEU B 50 N LEU B 159 SHEET 4 BB 5 ASN B 202 ALA B 207 1 O ASN B 202 N TYR B 53 SHEET 5 BB 5 HIS B 323 ASP B 328 1 O HIS B 323 N ILE B 203 SITE 1 AC1 11 HIS A 58 GLY A 59 MET A 60 GLY A 61 SITE 2 AC1 11 LYS A 62 THR A 63 ARG A 220 ARG A 222 SITE 3 AC1 11 HOH A2063 HOH A2162 HOH A2164 SITE 1 AC2 7 HIS B 58 GLY B 59 MET B 60 GLY B 61 SITE 2 AC2 7 LYS B 62 THR B 63 HOH B2069 SITE 1 AC3 15 HIS A 58 GLU A 83 ILE A 97 TYR A 101 SITE 2 AC3 15 GLN A 125 MET A 128 TYR A 132 ARG A 163 SITE 3 AC3 15 ALA A 168 TYR A 172 ARG A 222 GLU A 225 SITE 4 AC3 15 HOH A2068 HOH A2162 HOH A2163 SITE 1 AC4 11 HIS B 58 GLU B 83 TYR B 101 GLN B 125 SITE 2 AC4 11 MET B 128 ARG B 163 ALA B 168 TYR B 172 SITE 3 AC4 11 GLU B 225 HOH B2175 HOH B2176 CRYST1 113.730 118.010 108.200 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008793 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008474 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009242 0.00000 MTRIX1 1 -0.925360 -0.325390 -0.194480 74.97475 1 MTRIX2 1 -0.324100 0.412980 0.851120 23.23950 1 MTRIX3 1 -0.196630 0.850630 -0.487610 -9.95733 1