HEADER LYASE 08-APR-03 1OF8 TITLE DOUBLE COMPLEX OF THE TYROSINE SENSITIVE DAHP SYNTHASE FROM S. TITLE 2 CEREVISIAE WITH CO2+, PEP AND THE E4P ANALOGOUE G3P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE, TYROSINE- COMPND 3 INHIBITED; COMPND 4 CHAIN: A, B; COMPND 5 SYNONYM: PHOSPHO-2-KETO-3-DEOXYHEPTONATE ALDOLASE DAHP SYNTHETASE, 3- COMPND 6 DEOXY-D-ARABINO-HEPTULOSONATE 7-PHOSPHATE SYNTHASE, PHOSPHO-2- COMPND 7 DEHYDRO- 3-DEOXYHEPTONATE ALDOLASE; COMPND 8 EC: 4.1.2.15; COMPND 9 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 STRAIN: RH1326; SOURCE 6 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932 KEYWDS BETA-ALPHA-BARREL, LYASE, SYNTHASE, ALDOLASE, SYNTHETASE EXPDTA X-RAY DIFFRACTION AUTHOR V.KOENIG,A.PFEIL,G.HEINRICH,G.H.BRAUS,T.R.SCHNEIDER REVDAT 7 13-DEC-23 1OF8 1 REMARK LINK REVDAT 6 24-JUL-19 1OF8 1 REMARK REVDAT 5 22-MAY-19 1OF8 1 REMARK REVDAT 4 05-FEB-14 1OF8 1 REMARK VERSN HETSYN FORMUL REVDAT 3 24-FEB-09 1OF8 1 VERSN REVDAT 2 26-MAY-05 1OF8 1 AUTHOR JRNL REVDAT 1 08-APR-04 1OF8 0 JRNL AUTH V.KOENIG,A.PFEIL,G.H.BRAUS,T.R.SCHNEIDER JRNL TITL SUBSTRATE AND METAL COMPLEXES OF JRNL TITL 2 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM JRNL TITL 3 SACCHAROMYCES CEREVISIAE PROVIDE NEW INSIGHTS INTO THE JRNL TITL 4 CATALYTIC MECHANISM JRNL REF J.MOL.BIOL. V. 337 675 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15019786 JRNL DOI 10.1016/J.JMB.2004.01.055 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.HARTMANN,T.R.SCHNEIDER,A.PFEIL,G.HEINRICH,W.N.LIPSCOMB, REMARK 1 AUTH 2 G.H.BRAUS REMARK 1 TITL EVOLUTION OF FEEDBACK-INHIBITED BETA /ALPHA BARREL REMARK 1 TITL 2 ISOENZYMES BY GENE DUPLICATION AND A SINGLE MUTATION. REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 100 862 2003 REMARK 1 REFN ISSN 0027-8424 REMARK 1 PMID 12540830 REMARK 1 DOI 10.1073/PNAS.0337566100 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 27.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 3 NUMBER OF REFLECTIONS : 90336 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.127 REMARK 3 R VALUE (WORKING SET) : 0.125 REMARK 3 FREE R VALUE : 0.167 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4763 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5152 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 54 REMARK 3 SOLVENT ATOMS : 790 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 16.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : 0.32000 REMARK 3 B33 (A**2) : -0.10000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.01000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.042 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.119 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OF8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-APR-03. REMARK 100 THE DEPOSITION ID IS D_1290011814. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-JUL-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.811 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 234883 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 27.300 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.500 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 2.400 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 9.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 1.98 REMARK 200 R MERGE FOR SHELL (I) : 0.32000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: MOLECULE A OF PDB ENTRY 1HFB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 8.50 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 98.23100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.39400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 98.23100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 25.39400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -52.1 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 SER A 4 REMARK 465 PRO A 5 REMARK 465 MET A 6 REMARK 465 PHE A 7 REMARK 465 ALA A 8 REMARK 465 ALA A 9 REMARK 465 ASN A 10 REMARK 465 GLY A 11 REMARK 465 MET A 12 REMARK 465 PRO A 13 REMARK 465 LYS A 14 REMARK 465 VAL A 15 REMARK 465 ASN A 16 REMARK 465 GLN A 17 REMARK 465 GLY A 18 REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 GLU A 21 REMARK 465 ASP A 22 REMARK 465 PRO A 327 REMARK 465 ALA A 328 REMARK 465 GLU A 329 REMARK 465 GLY A 330 REMARK 465 LYS A 331 REMARK 465 ALA A 332 REMARK 465 GLY A 333 REMARK 465 LYS A 369 REMARK 465 LYS A 370 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLU B 3 REMARK 465 SER B 4 REMARK 465 PRO B 5 REMARK 465 MET B 6 REMARK 465 PHE B 7 REMARK 465 ALA B 8 REMARK 465 ALA B 9 REMARK 465 ASN B 10 REMARK 465 GLY B 11 REMARK 465 MET B 12 REMARK 465 PRO B 13 REMARK 465 LYS B 14 REMARK 465 VAL B 15 REMARK 465 ASN B 16 REMARK 465 GLN B 17 REMARK 465 GLY B 18 REMARK 465 ALA B 19 REMARK 465 GLU B 20 REMARK 465 GLU B 21 REMARK 465 ASP B 22 REMARK 465 ALA B 328 REMARK 465 GLU B 329 REMARK 465 GLY B 330 REMARK 465 LYS B 370 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 52 CG CD CE NZ REMARK 470 LYS A 253 CG CD CE NZ REMARK 470 LYS A 287 CG CD CE NZ REMARK 470 LYS B 287 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2174 O HOH A 2354 1.97 REMARK 500 OE1 GLU A 366 O HOH A 2381 2.01 REMARK 500 N VAL A 23 O HOH A 2001 2.13 REMARK 500 O HOH A 2223 O HOH A 2224 2.13 REMARK 500 N VAL B 23 O HOH B 2001 2.13 REMARK 500 OE2 GLU B 97 NH1 ARG B 355 2.16 REMARK 500 NZ LYS B 229 O HOH B 2260 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2243 O HOH B 2069 1545 2.11 REMARK 500 O HOH A 2304 O HOH B 2308 1545 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 352 CB - CG - OD2 ANGL. DEV. = 6.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 116 -83.24 -123.21 REMARK 500 ASP A 125 73.98 -157.65 REMARK 500 ASN A 129 24.23 -145.46 REMARK 500 SER A 195 30.16 -89.54 REMARK 500 ASN A 256 44.59 -144.64 REMARK 500 SER A 281 -157.55 -107.54 REMARK 500 HIS A 282 -128.59 49.72 REMARK 500 ASP A 288 106.20 -165.19 REMARK 500 THR A 341 -121.64 -120.50 REMARK 500 THR B 116 -82.19 -124.37 REMARK 500 ASP B 125 72.93 -156.16 REMARK 500 ASN B 129 23.92 -146.63 REMARK 500 SER B 195 31.47 -89.42 REMARK 500 ASN B 256 35.50 -141.86 REMARK 500 SER B 281 -161.00 -103.68 REMARK 500 HIS B 282 -129.98 54.99 REMARK 500 LYS B 287 32.46 72.12 REMARK 500 ASP B 288 112.21 -164.17 REMARK 500 THR B 341 -120.94 -120.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B2066 DISTANCE = 6.57 ANGSTROMS REMARK 525 HOH B2067 DISTANCE = 5.94 ANGSTROMS REMARK 525 HOH B2084 DISTANCE = 5.83 ANGSTROMS REMARK 525 HOH B2191 DISTANCE = 6.49 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO A1369 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 76 SG REMARK 620 2 HIS A 282 NE2 170.0 REMARK 620 3 GLU A 316 OE2 90.0 89.1 REMARK 620 4 ASP A 342 OD1 92.6 95.1 133.9 REMARK 620 5 HOH A2383 O 87.8 85.8 135.0 91.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CO B1372 CO REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 76 SG REMARK 620 2 HIS B 282 NE2 171.8 REMARK 620 3 GLU B 316 OE2 86.7 91.6 REMARK 620 4 ASP B 342 OD2 95.0 92.2 131.3 REMARK 620 5 HOH B2393 O 87.6 87.3 130.3 98.3 REMARK 620 N 1 2 3 4 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "BA" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO A 1369 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CO B 1372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEP A 1370 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3P A 1371 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEP B 1373 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE G3P B 1374 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 1372 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1371 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HFB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TYROSINE-REGULATED 3-DEOXY-D-ARABINO- REMARK 900 HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE REMARK 900 COMPLEXED WITH PHOSPHOENOLPYRUVATE REMARK 900 RELATED ID: 1OAB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-DEOXY-D-ARABINO- HEPTULOSONATE-7-PHOSPHATE REMARK 900 SYNTHASE FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH REMARK 900 PHOSPHOENOLPYRUVATE AND MANGANESE(II) REMARK 900 RELATED ID: 1OF6 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TYROSINE-REGULATED 3-DEOXY-D-ARABINO- REMARK 900 HEPTULOSONATE-7-PHOSPHATE SYNTHASE FROM SACCHAROMYCES CEREVISIAE REMARK 900 COMPLEXED WITH TYROSINE AND MANGANESE REMARK 900 RELATED ID: 1OFA RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-DEOXY-D-ARABINO- HEPTULOSONATE-7-PHOSPHATE REMARK 900 SYNTHASE FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH REMARK 900 PHOSPHOENOLPYRUVATE AND COBALT(II) REMARK 900 RELATED ID: 1OFB RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF 3-DEOXY-D-ARABINO- HEPTULOSONATE-7-PHOSPHATE REMARK 900 SYNTHASE FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH MANGANESE(II) DBREF 1OF8 A 1 370 UNP P32449 AROG_YEAST 1 370 DBREF 1OF8 B 1 370 UNP P32449 AROG_YEAST 1 370 SEQRES 1 A 370 MET SER GLU SER PRO MET PHE ALA ALA ASN GLY MET PRO SEQRES 2 A 370 LYS VAL ASN GLN GLY ALA GLU GLU ASP VAL ARG ILE LEU SEQRES 3 A 370 GLY TYR ASP PRO LEU ALA SER PRO ALA LEU LEU GLN VAL SEQRES 4 A 370 GLN ILE PRO ALA THR PRO THR SER LEU GLU THR ALA LYS SEQRES 5 A 370 ARG GLY ARG ARG GLU ALA ILE ASP ILE ILE THR GLY LYS SEQRES 6 A 370 ASP ASP ARG VAL LEU VAL ILE VAL GLY PRO CYS SER ILE SEQRES 7 A 370 HIS ASP LEU GLU ALA ALA GLN GLU TYR ALA LEU ARG LEU SEQRES 8 A 370 LYS LYS LEU SER ASP GLU LEU LYS GLY ASP LEU SER ILE SEQRES 9 A 370 ILE MET ARG ALA TYR LEU GLU LYS PRO ARG THR THR VAL SEQRES 10 A 370 GLY TRP LYS GLY LEU ILE ASN ASP PRO ASP VAL ASN ASN SEQRES 11 A 370 THR PHE ASN ILE ASN LYS GLY LEU GLN SER ALA ARG GLN SEQRES 12 A 370 LEU PHE VAL ASN LEU THR ASN ILE GLY LEU PRO ILE GLY SEQRES 13 A 370 SER GLU MET LEU ASP THR ILE SER PRO GLN TYR LEU ALA SEQRES 14 A 370 ASP LEU VAL SER PHE GLY ALA ILE GLY ALA ARG THR THR SEQRES 15 A 370 GLU SER GLN LEU HIS ARG GLU LEU ALA SER GLY LEU SER SEQRES 16 A 370 PHE PRO VAL GLY PHE LYS ASN GLY THR ASP GLY THR LEU SEQRES 17 A 370 ASN VAL ALA VAL ASP ALA CYS GLN ALA ALA ALA HIS SER SEQRES 18 A 370 HIS HIS PHE MET GLY VAL THR LYS HIS GLY VAL ALA ALA SEQRES 19 A 370 ILE THR THR THR LYS GLY ASN GLU HIS CYS PHE VAL ILE SEQRES 20 A 370 LEU ARG GLY GLY LYS LYS GLY THR ASN TYR ASP ALA LYS SEQRES 21 A 370 SER VAL ALA GLU ALA LYS ALA GLN LEU PRO ALA GLY SER SEQRES 22 A 370 ASN GLY LEU MET ILE ASP TYR SER HIS GLY ASN SER ASN SEQRES 23 A 370 LYS ASP PHE ARG ASN GLN PRO LYS VAL ASN ASP VAL VAL SEQRES 24 A 370 CYS GLU GLN ILE ALA ASN GLY GLU ASN ALA ILE THR GLY SEQRES 25 A 370 VAL MET ILE GLU SER ASN ILE ASN GLU GLY ASN GLN GLY SEQRES 26 A 370 ILE PRO ALA GLU GLY LYS ALA GLY LEU LYS TYR GLY VAL SEQRES 27 A 370 SER ILE THR ASP ALA CYS ILE GLY TRP GLU THR THR GLU SEQRES 28 A 370 ASP VAL LEU ARG LYS LEU ALA ALA ALA VAL ARG GLN ARG SEQRES 29 A 370 ARG GLU VAL ASN LYS LYS SEQRES 1 B 370 MET SER GLU SER PRO MET PHE ALA ALA ASN GLY MET PRO SEQRES 2 B 370 LYS VAL ASN GLN GLY ALA GLU GLU ASP VAL ARG ILE LEU SEQRES 3 B 370 GLY TYR ASP PRO LEU ALA SER PRO ALA LEU LEU GLN VAL SEQRES 4 B 370 GLN ILE PRO ALA THR PRO THR SER LEU GLU THR ALA LYS SEQRES 5 B 370 ARG GLY ARG ARG GLU ALA ILE ASP ILE ILE THR GLY LYS SEQRES 6 B 370 ASP ASP ARG VAL LEU VAL ILE VAL GLY PRO CYS SER ILE SEQRES 7 B 370 HIS ASP LEU GLU ALA ALA GLN GLU TYR ALA LEU ARG LEU SEQRES 8 B 370 LYS LYS LEU SER ASP GLU LEU LYS GLY ASP LEU SER ILE SEQRES 9 B 370 ILE MET ARG ALA TYR LEU GLU LYS PRO ARG THR THR VAL SEQRES 10 B 370 GLY TRP LYS GLY LEU ILE ASN ASP PRO ASP VAL ASN ASN SEQRES 11 B 370 THR PHE ASN ILE ASN LYS GLY LEU GLN SER ALA ARG GLN SEQRES 12 B 370 LEU PHE VAL ASN LEU THR ASN ILE GLY LEU PRO ILE GLY SEQRES 13 B 370 SER GLU MET LEU ASP THR ILE SER PRO GLN TYR LEU ALA SEQRES 14 B 370 ASP LEU VAL SER PHE GLY ALA ILE GLY ALA ARG THR THR SEQRES 15 B 370 GLU SER GLN LEU HIS ARG GLU LEU ALA SER GLY LEU SER SEQRES 16 B 370 PHE PRO VAL GLY PHE LYS ASN GLY THR ASP GLY THR LEU SEQRES 17 B 370 ASN VAL ALA VAL ASP ALA CYS GLN ALA ALA ALA HIS SER SEQRES 18 B 370 HIS HIS PHE MET GLY VAL THR LYS HIS GLY VAL ALA ALA SEQRES 19 B 370 ILE THR THR THR LYS GLY ASN GLU HIS CYS PHE VAL ILE SEQRES 20 B 370 LEU ARG GLY GLY LYS LYS GLY THR ASN TYR ASP ALA LYS SEQRES 21 B 370 SER VAL ALA GLU ALA LYS ALA GLN LEU PRO ALA GLY SER SEQRES 22 B 370 ASN GLY LEU MET ILE ASP TYR SER HIS GLY ASN SER ASN SEQRES 23 B 370 LYS ASP PHE ARG ASN GLN PRO LYS VAL ASN ASP VAL VAL SEQRES 24 B 370 CYS GLU GLN ILE ALA ASN GLY GLU ASN ALA ILE THR GLY SEQRES 25 B 370 VAL MET ILE GLU SER ASN ILE ASN GLU GLY ASN GLN GLY SEQRES 26 B 370 ILE PRO ALA GLU GLY LYS ALA GLY LEU LYS TYR GLY VAL SEQRES 27 B 370 SER ILE THR ASP ALA CYS ILE GLY TRP GLU THR THR GLU SEQRES 28 B 370 ASP VAL LEU ARG LYS LEU ALA ALA ALA VAL ARG GLN ARG SEQRES 29 B 370 ARG GLU VAL ASN LYS LYS HET CO A1369 1 HET PEP A1370 10 HET G3P A1371 10 HET GOL A1372 6 HET GOL B1371 6 HET CO B1372 1 HET PEP B1373 10 HET G3P B1374 10 HETNAM CO COBALT (II) ION HETNAM PEP PHOSPHOENOLPYRUVATE HETNAM G3P SN-GLYCEROL-3-PHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CO 2(CO 2+) FORMUL 4 PEP 2(C3 H5 O6 P) FORMUL 5 G3P 2(C3 H9 O6 P) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 11 HOH *790(H2 O) HELIX 1 1 SER A 33 ILE A 41 1 9 HELIX 2 2 THR A 44 THR A 63 1 20 HELIX 3 3 ASP A 80 LYS A 99 1 20 HELIX 4 4 ASN A 133 ASN A 150 1 18 HELIX 5 5 SER A 164 ALA A 169 1 6 HELIX 6 6 ASP A 170 VAL A 172 5 3 HELIX 7 7 SER A 184 GLY A 193 1 10 HELIX 8 8 LEU A 208 ALA A 219 1 12 HELIX 9 9 ASP A 258 LEU A 269 1 12 HELIX 10 10 SER A 281 ASN A 286 5 6 HELIX 11 11 ASP A 288 ARG A 290 5 3 HELIX 12 12 ASN A 291 ASN A 305 1 15 HELIX 13 13 GLY A 346 ASN A 368 1 23 HELIX 14 14 SER B 33 ILE B 41 1 9 HELIX 15 15 THR B 44 THR B 63 1 20 HELIX 16 16 ASP B 80 LYS B 99 1 20 HELIX 17 17 ASN B 133 ASN B 150 1 18 HELIX 18 18 SER B 164 ALA B 169 1 6 HELIX 19 19 ASP B 170 VAL B 172 5 3 HELIX 20 20 SER B 184 GLY B 193 1 10 HELIX 21 21 LEU B 208 ALA B 219 1 12 HELIX 22 22 ASP B 258 LEU B 269 1 12 HELIX 23 23 ASN B 284 ASN B 286 5 3 HELIX 24 24 ASP B 288 ARG B 290 5 3 HELIX 25 25 ASN B 291 ASN B 305 1 15 HELIX 26 26 GLY B 346 LYS B 369 1 24 SHEET 1 AA 3 ILE A 25 ASP A 29 0 SHEET 2 AA 3 ALA B 233 THR B 238 -1 O ILE B 235 N ASP A 29 SHEET 3 AA 3 HIS B 223 VAL B 227 -1 O PHE B 224 N THR B 236 SHEET 1 AB 9 VAL A 69 GLY A 74 0 SHEET 2 AB 9 LEU A 102 ARG A 107 1 O SER A 103 N VAL A 71 SHEET 3 AB 9 ILE A 155 GLU A 158 1 N GLY A 156 O MET A 106 SHEET 4 AB 9 PHE A 174 ILE A 177 1 O PHE A 174 N SER A 157 SHEET 5 AB 9 VAL A 198 LYS A 201 1 O GLY A 199 N ILE A 177 SHEET 6 AB 9 CYS A 244 LEU A 248 1 O PHE A 245 N PHE A 200 SHEET 7 AB 9 LEU A 276 ASP A 279 1 O MET A 277 N LEU A 248 SHEET 8 AB 9 ILE A 310 GLU A 316 1 N THR A 311 O LEU A 276 SHEET 9 AB 9 VAL A 69 GLY A 74 1 O LEU A 70 N VAL A 313 SHEET 1 AC 3 HIS A 223 VAL A 227 0 SHEET 2 AC 3 ALA A 233 THR A 238 -1 O ALA A 234 N GLY A 226 SHEET 3 AC 3 ILE B 25 ASP B 29 -1 N LEU B 26 O THR A 237 SHEET 1 BA 9 VAL B 69 GLY B 74 0 SHEET 2 BA 9 LEU B 102 ARG B 107 1 O SER B 103 N VAL B 71 SHEET 3 BA 9 ILE B 155 GLU B 158 1 N GLY B 156 O MET B 106 SHEET 4 BA 9 PHE B 174 ILE B 177 1 O PHE B 174 N SER B 157 SHEET 5 BA 9 VAL B 198 LYS B 201 1 O GLY B 199 N ILE B 177 SHEET 6 BA 9 CYS B 244 GLY B 250 1 O PHE B 245 N PHE B 200 SHEET 7 BA 9 LEU B 276 GLY B 283 1 O MET B 277 N LEU B 248 SHEET 8 BA 9 ILE B 310 GLU B 316 1 N THR B 311 O LEU B 276 SHEET 9 BA 9 VAL B 69 GLY B 74 1 O LEU B 70 N VAL B 313 LINK SG CYS A 76 CO CO A1369 1555 1555 2.48 LINK NE2 HIS A 282 CO CO A1369 1555 1555 2.23 LINK OE2 GLU A 316 CO CO A1369 1555 1555 1.95 LINK OD1 ASP A 342 CO CO A1369 1555 1555 2.28 LINK CO CO A1369 O HOH A2383 1555 1555 2.07 LINK SG CYS B 76 CO CO B1372 1555 1555 2.52 LINK NE2 HIS B 282 CO CO B1372 1555 1555 2.27 LINK OE2 GLU B 316 CO CO B1372 1555 1555 2.00 LINK OD2 ASP B 342 CO CO B1372 1555 1555 2.16 LINK CO CO B1372 O HOH B2393 1555 1555 1.91 SITE 1 AC1 6 CYS A 76 HIS A 282 GLU A 316 ASP A 342 SITE 2 AC1 6 PEP A1370 HOH A2383 SITE 1 AC2 6 CYS B 76 HIS B 282 GLU B 316 ASP B 342 SITE 2 AC2 6 PEP B1373 HOH B2393 SITE 1 AC3 17 ARG A 107 TYR A 109 LYS A 112 GLU A 158 SITE 2 AC3 17 GLY A 178 ALA A 179 ARG A 180 LYS A 201 SITE 3 AC3 17 ARG A 249 HIS A 282 CO A1369 G3P A1371 SITE 4 AC3 17 HOH A2191 HOH A2383 HOH A2384 HOH A2385 SITE 5 AC3 17 HOH A2386 SITE 1 AC4 12 LYS A 112 PRO A 113 ARG A 114 THR A 115 SITE 2 AC4 12 ASP A 342 PEP A1370 HOH A2133 HOH A2366 SITE 3 AC4 12 HOH A2386 HOH A2387 HOH A2388 HOH A2389 SITE 1 AC5 16 ARG B 107 TYR B 109 LYS B 112 GLY B 178 SITE 2 AC5 16 ALA B 179 ARG B 180 LYS B 201 ARG B 249 SITE 3 AC5 16 HIS B 282 CO B1372 G3P B1374 HOH B2203 SITE 4 AC5 16 HOH B2393 HOH B2394 HOH B2395 HOH B2396 SITE 1 AC6 13 LYS B 112 PRO B 113 ARG B 114 THR B 115 SITE 2 AC6 13 ASP B 342 PEP B1373 HOH B2373 HOH B2394 SITE 3 AC6 13 HOH B2397 HOH B2398 HOH B2399 HOH B2400 SITE 4 AC6 13 HOH B2401 SITE 1 AC7 8 GLN A 185 GLU A 189 PHE A 224 GLU B 111 SITE 2 AC7 8 ASP B 161 HOH B2124 HOH B2127 HOH B2207 SITE 1 AC8 8 GLU A 111 ASP A 161 HOH A2119 HOH A2195 SITE 2 AC8 8 HOH A2196 GLN B 185 GLU B 189 PHE B 224 CRYST1 196.462 50.788 64.700 90.00 106.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005090 0.000000 0.001497 0.00000 SCALE2 0.000000 0.019690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016111 0.00000