HEADER ISOMERASE 17-APR-03 1OFN TITLE PURIFICATION, CRYSTALLISATION AND PRELIMINARY STRUCTURAL STUDIES OF TITLE 2 DTDP-4-KETO-6-DEOXY-GLUCOSE-5-EPIMERASE (EVAD) FROM AMYCOLATOPSIS TITLE 3 ORIENTALIS; THE FOURTH ENZYME IN THE DTDP-L-EPIVANCOSAMINE TITLE 4 BIOSYNTHETIC PATHWAY. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PCZA361.16; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: DTDP-4-KETO-6-DEOXY-GLUCOSE-5-EPIMERASE; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS ORIENTALIS; SOURCE 3 ORGANISM_COMMON: STREPTOMYCES; SOURCE 4 ORGANISM_TAXID: 31958; SOURCE 5 STRAIN: COSMID PCZA361(AJ223998); SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET24; SOURCE 10 OTHER_DETAILS: RECOMBINANT PROTEIN KEYWDS EPIMERASE, VANCOMYCIN GROUP ANTIBIOTIC, EVAD, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR A.B.MERKEL,J.H.NAISMITH REVDAT 4 13-DEC-23 1OFN 1 REMARK REVDAT 3 08-MAY-19 1OFN 1 REMARK REVDAT 2 24-FEB-09 1OFN 1 VERSN REVDAT 1 15-APR-04 1OFN 0 JRNL AUTH A.B.MERKEL,G.K.TEMPLE,M.D.BURKART,H.C.LOSEY,K.BEIS, JRNL AUTH 2 C.T.WALSH,J.H.NAISMITH JRNL TITL PURIFICATION, CRYSTALLIZATION AND PRELIMINARY STRUCTURAL JRNL TITL 2 STUDIES OF DTDP-4-KETO-6-DEOXY-GLUCOSE-5-EPIMERASE (EVAD) JRNL TITL 3 FROM AMYCOLATOPSIS ORIENTALIS, THE FOURTH ENZYME IN THE JRNL TITL 4 DTDP-L-EPIVANCOSAMINE BIOSYNTHETIC PATHWAY. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 58 1226 2002 JRNL REFN ISSN 0907-4449 JRNL PMID 12077451 JRNL DOI 10.1107/S0907444902007382 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 57.74 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 62417 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.146 REMARK 3 R VALUE (WORKING SET) : 0.144 REMARK 3 FREE R VALUE : 0.178 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3334 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4533 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1710 REMARK 3 BIN FREE R VALUE SET COUNT : 239 REMARK 3 BIN FREE R VALUE : 0.2200 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3123 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 543 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 12.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49000 REMARK 3 B22 (A**2) : 0.62000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.078 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.066 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.979 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.970 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3207 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3010 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4359 ; 1.710 ; 1.972 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6958 ; 0.754 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 402 ; 5.337 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 567 ;16.943 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 504 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3562 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 646 ; 0.008 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 580 ; 0.226 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2835 ; 0.198 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 418 ; 0.192 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): 3 ; 0.176 ; 0.500 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.440 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 32 ; 0.256 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 36 ; 0.402 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2015 ; 1.446 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3265 ; 2.231 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1192 ; 3.243 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1094 ; 4.947 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1OFN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 17-APR-03. REMARK 100 THE DEPOSITION ID IS D_1290012597. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-NOV-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMOND MONOCHROMATOR REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65259 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 57.735 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.500 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.55 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.10 REMARK 200 R MERGE FOR SHELL (I) : 0.26300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1DZR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.20 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25%PEG4K, 100MM MGCL2, 100MM TRIS-HCL, REMARK 280 PH8.0, SITTING DROP,, PH 8.00, VAPOR DIFFUSION, SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 49.28750 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.99800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.28750 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.99800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 VAL A 203 REMARK 465 SER A 204 REMARK 465 THR A 205 REMARK 465 SER B 204 REMARK 465 THR B 205 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 VAL B 203 CA C O CB CG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O1 GOL A 1204 O HOH A 2280 1.56 REMARK 500 OD2 ASP A 159 O HOH A 2218 1.59 REMARK 500 NE2 GLN A 107 O HOH A 2159 1.93 REMARK 500 OD1 ASP B 168 O HOH B 2214 1.96 REMARK 500 O HOH A 2233 O HOH B 2055 1.97 REMARK 500 O HOH A 2181 O HOH B 2031 2.01 REMARK 500 O HOH A 2218 O HOH A 2222 2.03 REMARK 500 O HOH A 2189 O HOH B 2061 2.15 REMARK 500 OE1 GLN A 107 O HOH A 2159 2.15 REMARK 500 O HOH B 2200 O HOH B 2220 2.18 REMARK 500 O HOH A 2283 O HOH A 2284 2.18 REMARK 500 OD1 ASP A 22 O HOH A 2056 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 178 OE1 GLU A 178 2555 1.87 REMARK 500 O HOH B 2140 O HOH B 2140 2665 1.92 REMARK 500 O HOH A 2241 O HOH A 2241 2555 1.94 REMARK 500 O HOH A 2002 O HOH B 2053 3546 2.03 REMARK 500 O HOH A 2098 O HOH B 2054 3546 2.11 REMARK 500 O HOH A 2002 O HOH B 2106 3546 2.12 REMARK 500 O HOH A 2061 O HOH A 2061 2555 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET B 53 CG MET B 53 SD -0.242 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 110 CG - CD - NE ANGL. DEV. = -18.0 DEGREES REMARK 500 ARG A 110 NE - CZ - NH1 ANGL. DEV. = -6.2 DEGREES REMARK 500 ARG A 110 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 137 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASP A 159 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 MET B 1 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG B 110 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 201 -98.91 -59.65 REMARK 500 ASP B 151 109.97 -40.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2008 DISTANCE = 6.10 ANGSTROMS REMARK 525 HOH A2026 DISTANCE = 6.22 ANGSTROMS REMARK 525 HOH A2034 DISTANCE = 6.31 ANGSTROMS REMARK 525 HOH A2052 DISTANCE = 7.24 ANGSTROMS REMARK 525 HOH A2061 DISTANCE = 5.82 ANGSTROMS REMARK 525 HOH B2046 DISTANCE = 5.83 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1203 DBREF 1OFN A 1 205 UNP O52806 O52806 1 205 DBREF 1OFN B 1 205 UNP O52806 O52806 1 205 SEQRES 1 A 205 MET GLN ALA ARG LYS LEU ALA VAL ASP GLY ALA ILE GLU SEQRES 2 A 205 PHE THR PRO ARG VAL PHE ALA ASP ASP ARG GLY LEU LEU SEQRES 3 A 205 ILE LEU PRO TYR GLN GLU GLU ALA PHE VAL GLU ALA HIS SEQRES 4 A 205 GLY GLY PRO LEU PHE ARG VAL ALA GLN THR ILE HIS SER SEQRES 5 A 205 MET SER LYS ARG GLY VAL VAL ARG GLY ILE HIS TYR THR SEQRES 6 A 205 VAL THR PRO PRO GLY THR ALA LYS TYR VAL TYR CYS ALA SEQRES 7 A 205 ARG GLY LYS ALA MET ASP ILE VAL ILE ASP ILE ARG VAL SEQRES 8 A 205 GLY SER PRO THR PHE GLY GLN TRP ASP SER VAL LEU MET SEQRES 9 A 205 ASP GLN GLN ASP PRO ARG ALA VAL TYR LEU PRO VAL GLY SEQRES 10 A 205 VAL GLY HIS ALA PHE VAL ALA LEU GLU ASP ASP THR VAL SEQRES 11 A 205 MET SER TYR MET LEU SER ARG SER TYR VAL THR GLN ASP SEQRES 12 A 205 GLU LEU ALA LEU SER ALA LEU ASP PRO ALA LEU GLY LEU SEQRES 13 A 205 PRO ILE ASP ILE GLY VAL GLU PRO ILE VAL SER ASP ARG SEQRES 14 A 205 ASP ARG VAL ALA ILE THR LEU ALA GLU ALA GLN ARG GLN SEQRES 15 A 205 GLY LEU LEU PRO ASP TYR THR THR SER GLN GLU ILE GLU SEQRES 16 A 205 ARG ARG LEU THR ALA VAL PRO VAL SER THR SEQRES 1 B 205 MET GLN ALA ARG LYS LEU ALA VAL ASP GLY ALA ILE GLU SEQRES 2 B 205 PHE THR PRO ARG VAL PHE ALA ASP ASP ARG GLY LEU LEU SEQRES 3 B 205 ILE LEU PRO TYR GLN GLU GLU ALA PHE VAL GLU ALA HIS SEQRES 4 B 205 GLY GLY PRO LEU PHE ARG VAL ALA GLN THR ILE HIS SER SEQRES 5 B 205 MET SER LYS ARG GLY VAL VAL ARG GLY ILE HIS TYR THR SEQRES 6 B 205 VAL THR PRO PRO GLY THR ALA LYS TYR VAL TYR CYS ALA SEQRES 7 B 205 ARG GLY LYS ALA MET ASP ILE VAL ILE ASP ILE ARG VAL SEQRES 8 B 205 GLY SER PRO THR PHE GLY GLN TRP ASP SER VAL LEU MET SEQRES 9 B 205 ASP GLN GLN ASP PRO ARG ALA VAL TYR LEU PRO VAL GLY SEQRES 10 B 205 VAL GLY HIS ALA PHE VAL ALA LEU GLU ASP ASP THR VAL SEQRES 11 B 205 MET SER TYR MET LEU SER ARG SER TYR VAL THR GLN ASP SEQRES 12 B 205 GLU LEU ALA LEU SER ALA LEU ASP PRO ALA LEU GLY LEU SEQRES 13 B 205 PRO ILE ASP ILE GLY VAL GLU PRO ILE VAL SER ASP ARG SEQRES 14 B 205 ASP ARG VAL ALA ILE THR LEU ALA GLU ALA GLN ARG GLN SEQRES 15 B 205 GLY LEU LEU PRO ASP TYR THR THR SER GLN GLU ILE GLU SEQRES 16 B 205 ARG ARG LEU THR ALA VAL PRO VAL SER THR HET GOL A1203 6 HET GOL A1204 6 HET GOL A1205 6 HET GOL B1203 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 4(C3 H8 O3) FORMUL 7 HOH *543(H2 O) HELIX 1 1 GLN A 31 GLY A 40 1 10 HELIX 2 2 VAL A 140 GLN A 142 5 3 HELIX 3 3 SER A 167 VAL A 172 1 6 HELIX 4 4 THR A 175 GLN A 182 1 8 HELIX 5 5 ASP A 187 THR A 199 1 13 HELIX 6 6 GLN B 31 GLY B 40 1 10 HELIX 7 7 VAL B 140 GLN B 142 5 3 HELIX 8 8 SER B 167 VAL B 172 1 6 HELIX 9 9 THR B 175 GLN B 182 1 8 HELIX 10 10 ASP B 187 THR B 199 1 13 SHEET 1 AA 8 GLN A 2 LYS A 5 0 SHEET 2 AA 8 ILE A 12 THR A 15 -1 O GLU A 13 N ARG A 4 SHEET 3 AA 8 ALA A 111 LEU A 114 -1 O ALA A 111 N PHE A 14 SHEET 4 AA 8 LYS A 73 ARG A 79 -1 O LYS A 73 N LEU A 114 SHEET 5 AA 8 THR A 129 LEU A 135 -1 O VAL A 130 N ALA A 78 SHEET 6 AA 8 GLN A 48 SER A 54 -1 O GLN A 48 N LEU A 135 SHEET 7 AA 8 GLY B 24 ILE B 27 -1 O LEU B 25 N MET A 53 SHEET 8 AA 8 PHE B 19 ASP B 21 -1 O PHE B 19 N LEU B 26 SHEET 1 AB 8 PHE A 19 ASP A 21 0 SHEET 2 AB 8 GLY A 24 ILE A 27 -1 O GLY A 24 N ASP A 21 SHEET 3 AB 8 GLN B 48 SER B 54 -1 O HIS B 51 N ILE A 27 SHEET 4 AB 8 THR B 129 LEU B 135 -1 O THR B 129 N SER B 54 SHEET 5 AB 8 LYS B 73 ARG B 79 -1 O TYR B 74 N MET B 134 SHEET 6 AB 8 ALA B 111 LEU B 114 -1 O VAL B 112 N VAL B 75 SHEET 7 AB 8 ILE B 12 THR B 15 -1 O ILE B 12 N TYR B 113 SHEET 8 AB 8 GLN B 2 LYS B 5 -1 O GLN B 2 N THR B 15 SHEET 1 AC 5 TRP A 99 MET A 104 0 SHEET 2 AC 5 ALA A 82 ILE A 87 -1 O ALA A 82 N MET A 104 SHEET 3 AC 5 GLY A 119 ALA A 124 -1 O GLY A 119 N ILE A 87 SHEET 4 AC 5 VAL A 59 THR A 65 -1 O ARG A 60 N PHE A 122 SHEET 5 AC 5 GLU A 144 ALA A 146 -1 O LEU A 145 N TYR A 64 SHEET 1 BA 5 TRP B 99 MET B 104 0 SHEET 2 BA 5 ALA B 82 ILE B 87 -1 O ALA B 82 N MET B 104 SHEET 3 BA 5 GLY B 119 ALA B 124 -1 O GLY B 119 N ILE B 87 SHEET 4 BA 5 VAL B 59 THR B 65 -1 O ARG B 60 N PHE B 122 SHEET 5 BA 5 GLU B 144 ALA B 146 -1 O LEU B 145 N TYR B 64 CISPEP 1 GLY A 61 ILE A 62 0 -0.03 CISPEP 2 THR A 67 PRO A 68 0 -3.13 CISPEP 3 PRO A 68 PRO A 69 0 5.85 CISPEP 4 GLY B 61 ILE B 62 0 -7.31 CISPEP 5 THR B 67 PRO B 68 0 -2.56 CISPEP 6 PRO B 68 PRO B 69 0 4.09 SITE 1 AC1 7 PHE A 19 ASP A 21 ARG A 23 GLY A 24 SITE 2 AC1 7 LEU A 25 LEU A 26 ARG B 60 SITE 1 AC2 10 THR A 49 SER A 132 MET A 134 HOH A2280 SITE 2 AC2 10 HOH A2281 TYR B 76 SER B 132 MET B 134 SITE 3 AC2 10 HOH B2128 HOH B2129 SITE 1 AC3 4 HOH A2001 HOH A2002 HOH A2283 HOH A2284 SITE 1 AC4 6 ILE B 50 HIS B 63 LYS B 73 HIS B 120 SITE 2 AC4 6 TYR B 133 HOH B2259 CRYST1 98.575 71.996 57.100 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010144 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013890 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017513 0.00000