HEADER OXIDOREDUCTASE 24-APR-03 1OG6 TITLE YDHF, AN ALDO-KETO REDUCTASE FROM E.COLI COMPLEXED WITH TITLE 2 NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL OXIDOREDUCTASE YDHF; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: YDHF; COMPND 5 ENGINEERED: YES; COMPND 6 OTHER_DETAILS: THERE IS A RATIO ONE TO ONE PROTEIN COMPND 7 MOLECULE AND NADP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PDEST17 KEYWDS OXIDOREDUCTASE, ALDO-KETO REDUCTASE, ALPHA/BETA BARREL, KEYWDS 2 NADPH-DEPENDANT, BACTERIAL TARGETS AT IGS-CNRS, FRANCE, KEYWDS 3 BIGS, STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR S.JEUDY,C.ABERGEL,J.M.CLAVERIE REVDAT 2 24-FEB-09 1OG6 1 VERSN REVDAT 1 29-MAY-03 1OG6 0 JRNL AUTH S.JEUDY,C.ABERGEL,J.M.CLAVERIE JRNL TITL CRYSTAL STRUCTURE OF YDHF, AN ALDO-KETO REDUCTASE JRNL TITL 2 FROM ESCHERICHIA COLI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.8 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.8 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.91 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.0 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3042373.64 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 27305 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 0.4 REMARK 3 FREE R VALUE TEST SET COUNT : 110 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.023 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.98 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4497 REMARK 3 BIN R VALUE (WORKING SET) : 0.340 REMARK 3 BIN FREE R VALUE : 0.089 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 0.0 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 2 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.063 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7080 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 199 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 66.8 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.6 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.93 REMARK 3 B22 (A**2) : -3.93 REMARK 3 B33 (A**2) : 7.85 REMARK 3 B12 (A**2) : 3.73 REMARK 3 B13 (A**2) : 0.00 REMARK 3 B23 (A**2) : 0.00 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.57 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.39 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.8 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.5 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.31 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.11 ; 1.50 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.93 ; 2.00 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.57 ; 2.00 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.55 ; 2.50 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.282 REMARK 3 BSOL : 14.409 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NADP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NADP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: FOUR DISORDERED RESIDUES MISSED IN REMARK 3 THE CHAIN B REMARK 4 REMARK 4 1OG6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 25-APR-03. REMARK 100 THE PDBE ID CODE IS EBI-12642. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-DEC-02 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.00 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9330 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27329 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 29.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.10500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.38100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.93 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: IMIDAZOLE/MALATE 0.2M REMARK 280 AMMONIUM SULFATE 0.1M PH7.0, POLY ETHYLENE GLYCOL 16% REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 87.26450 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 50.38218 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 32.64100 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 87.26450 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 50.38218 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 32.64100 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 87.26450 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 50.38218 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 32.64100 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 100.76437 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 65.28200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 100.76437 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 65.28200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 100.76437 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 65.28200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU B 212 REMARK 465 GLY B 213 REMARK 465 GLY B 214 REMARK 465 GLY B 215 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 PRO A 298 CA C O CB CG CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 4 - OG1 THR A 47 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 16 -38.18 -23.64 REMARK 500 TYR A 21 47.00 -102.14 REMARK 500 ALA A 31 -37.44 -37.77 REMARK 500 VAL A 46 86.46 -68.05 REMARK 500 HIS A 51 -167.66 -128.28 REMARK 500 ALA A 52 144.36 176.58 REMARK 500 ASP A 53 -82.05 -24.69 REMARK 500 LEU A 70 21.73 -75.99 REMARK 500 ALA A 71 69.92 -178.28 REMARK 500 ALA A 118 60.44 60.35 REMARK 500 HIS A 128 -69.86 -27.05 REMARK 500 GLN A 180 105.78 -58.80 REMARK 500 SER A 210 66.44 39.26 REMARK 500 ASN A 219 -65.30 -99.24 REMARK 500 PHE A 223 43.83 -109.80 REMARK 500 GLN A 256 75.02 49.91 REMARK 500 ASP A 296 -145.40 -78.73 REMARK 500 ILE B 5 124.14 -171.13 REMARK 500 VAL B 46 90.32 -69.11 REMARK 500 GLN B 59 25.33 -153.10 REMARK 500 PRO B 72 26.09 -60.60 REMARK 500 ARG B 75 29.68 -64.44 REMARK 500 HIS B 128 -53.30 -27.26 REMARK 500 ASN B 159 31.87 76.48 REMARK 500 ASN B 179 76.11 -155.46 REMARK 500 HIS B 187 87.76 -160.15 REMARK 500 ARG B 203 33.04 70.45 REMARK 500 PHE B 223 40.44 -105.84 REMARK 500 ASN B 238 66.79 64.20 REMARK 500 GLN B 256 78.39 59.76 REMARK 500 GLN C 3 162.44 -44.45 REMARK 500 TYR C 21 57.38 -107.33 REMARK 500 ASN C 28 85.89 47.22 REMARK 500 ASP C 53 -75.25 -45.13 REMARK 500 ALA C 71 61.66 -152.03 REMARK 500 GLN C 148 23.37 -75.94 REMARK 500 THR C 178 -178.24 -170.13 REMARK 500 ASN C 179 81.14 -151.33 REMARK 500 GLN C 180 105.55 -56.79 REMARK 500 ASN C 247 -7.60 -57.56 REMARK 500 GLN C 256 70.37 56.78 REMARK 500 ALA C 272 -75.71 -37.42 REMARK 500 VAL C 273 -26.95 -37.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAP A 1298 REMARK 615 NAP B 1299 REMARK 615 NAP C 1299 REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: DSSP REMARK 700 THE SHEETS PRESENTED AS "AB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 700 REMARK 700 THE SHEETS PRESENTED AS "CB" IN EACH CHAIN ON SHEET RECORDS REMARK 700 BELOW IS ACTUALLY AN 8-STRANDED BARREL THIS IS REPRESENTED BY REMARK 700 A 9-STRANDED SHEET IN WHICH THE FIRST AND LAST STRANDS REMARK 700 ARE IDENTICAL. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A1298 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B1299 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP C1299 DBREF 1OG6 A 1 298 UNP P76187 YDHF_ECOLI 1 298 DBREF 1OG6 B 1 298 UNP P76187 YDHF_ECOLI 1 298 DBREF 1OG6 C 1 298 UNP P76187 YDHF_ECOLI 1 298 SEQADV 1OG6 LEU A 1 UNP P76187 MET 1 CONFLICT SEQADV 1OG6 LEU B 1 UNP P76187 MET 1 CONFLICT SEQADV 1OG6 LEU C 1 UNP P76187 MET 1 CONFLICT SEQRES 1 A 298 LEU VAL GLN ARG ILE THR ILE ALA PRO GLN GLY PRO GLU SEQRES 2 A 298 PHE SER ARG PHE VAL MET GLY TYR TRP ARG LEU MET ASP SEQRES 3 A 298 TRP ASN MET SER ALA ARG GLN LEU VAL SER PHE ILE GLU SEQRES 4 A 298 GLU HIS LEU ASP LEU GLY VAL THR THR VAL ASP HIS ALA SEQRES 5 A 298 ASP ILE TYR GLY GLY TYR GLN CYS GLU ALA ALA PHE GLY SEQRES 6 A 298 GLU ALA LEU LYS LEU ALA PRO HIS LEU ARG GLU ARG MET SEQRES 7 A 298 GLU ILE VAL SER LYS CYS GLY ILE ALA THR THR ALA ARG SEQRES 8 A 298 GLU GLU ASN VAL ILE GLY HIS TYR ILE THR ASP ARG ASP SEQRES 9 A 298 HIS ILE ILE LYS SER ALA GLU GLN SER LEU ILE ASN LEU SEQRES 10 A 298 ALA THR ASP HIS LEU ASP LEU LEU LEU ILE HIS ARG PRO SEQRES 11 A 298 ASP PRO LEU MET ASP ALA ASP GLU VAL ALA ASP ALA PHE SEQRES 12 A 298 LYS HIS LEU HIS GLN SER GLY LYS VAL ARG HIS PHE GLY SEQRES 13 A 298 VAL SER ASN PHE THR PRO ALA GLN PHE ALA LEU LEU GLN SEQRES 14 A 298 SER ARG LEU PRO PHE THR LEU ALA THR ASN GLN VAL GLU SEQRES 15 A 298 ILE SER PRO VAL HIS GLN PRO LEU LEU LEU ASP GLY THR SEQRES 16 A 298 LEU ASP GLN LEU GLN GLN LEU ARG VAL ARG PRO MET ALA SEQRES 17 A 298 TRP SER CYS LEU GLY GLY GLY ARG LEU PHE ASN ASP ASP SEQRES 18 A 298 TYR PHE GLN PRO LEU ARG ASP GLU LEU ALA VAL VAL ALA SEQRES 19 A 298 GLU GLU LEU ASN ALA GLY SER ILE GLU GLN VAL VAL ASN SEQRES 20 A 298 ALA TRP VAL LEU ARG LEU PRO SER GLN PRO LEU PRO ILE SEQRES 21 A 298 ILE GLY SER GLY LYS ILE GLU ARG VAL ARG ALA ALA VAL SEQRES 22 A 298 GLU ALA GLU THR LEU LYS MET THR ARG GLN GLN TRP PHE SEQRES 23 A 298 ARG ILE ARG LYS ALA ALA LEU GLY TYR ASP VAL PRO SEQRES 1 B 298 LEU VAL GLN ARG ILE THR ILE ALA PRO GLN GLY PRO GLU SEQRES 2 B 298 PHE SER ARG PHE VAL MET GLY TYR TRP ARG LEU MET ASP SEQRES 3 B 298 TRP ASN MET SER ALA ARG GLN LEU VAL SER PHE ILE GLU SEQRES 4 B 298 GLU HIS LEU ASP LEU GLY VAL THR THR VAL ASP HIS ALA SEQRES 5 B 298 ASP ILE TYR GLY GLY TYR GLN CYS GLU ALA ALA PHE GLY SEQRES 6 B 298 GLU ALA LEU LYS LEU ALA PRO HIS LEU ARG GLU ARG MET SEQRES 7 B 298 GLU ILE VAL SER LYS CYS GLY ILE ALA THR THR ALA ARG SEQRES 8 B 298 GLU GLU ASN VAL ILE GLY HIS TYR ILE THR ASP ARG ASP SEQRES 9 B 298 HIS ILE ILE LYS SER ALA GLU GLN SER LEU ILE ASN LEU SEQRES 10 B 298 ALA THR ASP HIS LEU ASP LEU LEU LEU ILE HIS ARG PRO SEQRES 11 B 298 ASP PRO LEU MET ASP ALA ASP GLU VAL ALA ASP ALA PHE SEQRES 12 B 298 LYS HIS LEU HIS GLN SER GLY LYS VAL ARG HIS PHE GLY SEQRES 13 B 298 VAL SER ASN PHE THR PRO ALA GLN PHE ALA LEU LEU GLN SEQRES 14 B 298 SER ARG LEU PRO PHE THR LEU ALA THR ASN GLN VAL GLU SEQRES 15 B 298 ILE SER PRO VAL HIS GLN PRO LEU LEU LEU ASP GLY THR SEQRES 16 B 298 LEU ASP GLN LEU GLN GLN LEU ARG VAL ARG PRO MET ALA SEQRES 17 B 298 TRP SER CYS LEU GLY GLY GLY ARG LEU PHE ASN ASP ASP SEQRES 18 B 298 TYR PHE GLN PRO LEU ARG ASP GLU LEU ALA VAL VAL ALA SEQRES 19 B 298 GLU GLU LEU ASN ALA GLY SER ILE GLU GLN VAL VAL ASN SEQRES 20 B 298 ALA TRP VAL LEU ARG LEU PRO SER GLN PRO LEU PRO ILE SEQRES 21 B 298 ILE GLY SER GLY LYS ILE GLU ARG VAL ARG ALA ALA VAL SEQRES 22 B 298 GLU ALA GLU THR LEU LYS MET THR ARG GLN GLN TRP PHE SEQRES 23 B 298 ARG ILE ARG LYS ALA ALA LEU GLY TYR ASP VAL PRO SEQRES 1 C 298 LEU VAL GLN ARG ILE THR ILE ALA PRO GLN GLY PRO GLU SEQRES 2 C 298 PHE SER ARG PHE VAL MET GLY TYR TRP ARG LEU MET ASP SEQRES 3 C 298 TRP ASN MET SER ALA ARG GLN LEU VAL SER PHE ILE GLU SEQRES 4 C 298 GLU HIS LEU ASP LEU GLY VAL THR THR VAL ASP HIS ALA SEQRES 5 C 298 ASP ILE TYR GLY GLY TYR GLN CYS GLU ALA ALA PHE GLY SEQRES 6 C 298 GLU ALA LEU LYS LEU ALA PRO HIS LEU ARG GLU ARG MET SEQRES 7 C 298 GLU ILE VAL SER LYS CYS GLY ILE ALA THR THR ALA ARG SEQRES 8 C 298 GLU GLU ASN VAL ILE GLY HIS TYR ILE THR ASP ARG ASP SEQRES 9 C 298 HIS ILE ILE LYS SER ALA GLU GLN SER LEU ILE ASN LEU SEQRES 10 C 298 ALA THR ASP HIS LEU ASP LEU LEU LEU ILE HIS ARG PRO SEQRES 11 C 298 ASP PRO LEU MET ASP ALA ASP GLU VAL ALA ASP ALA PHE SEQRES 12 C 298 LYS HIS LEU HIS GLN SER GLY LYS VAL ARG HIS PHE GLY SEQRES 13 C 298 VAL SER ASN PHE THR PRO ALA GLN PHE ALA LEU LEU GLN SEQRES 14 C 298 SER ARG LEU PRO PHE THR LEU ALA THR ASN GLN VAL GLU SEQRES 15 C 298 ILE SER PRO VAL HIS GLN PRO LEU LEU LEU ASP GLY THR SEQRES 16 C 298 LEU ASP GLN LEU GLN GLN LEU ARG VAL ARG PRO MET ALA SEQRES 17 C 298 TRP SER CYS LEU GLY GLY GLY ARG LEU PHE ASN ASP ASP SEQRES 18 C 298 TYR PHE GLN PRO LEU ARG ASP GLU LEU ALA VAL VAL ALA SEQRES 19 C 298 GLU GLU LEU ASN ALA GLY SER ILE GLU GLN VAL VAL ASN SEQRES 20 C 298 ALA TRP VAL LEU ARG LEU PRO SER GLN PRO LEU PRO ILE SEQRES 21 C 298 ILE GLY SER GLY LYS ILE GLU ARG VAL ARG ALA ALA VAL SEQRES 22 C 298 GLU ALA GLU THR LEU LYS MET THR ARG GLN GLN TRP PHE SEQRES 23 C 298 ARG ILE ARG LYS ALA ALA LEU GLY TYR ASP VAL PRO HET NAP A1298 48 HET NAP B1299 48 HET NAP C1299 48 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NAP PHOSPHATE HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 4 NAP 3(C21 H28 N7 O17 P3) FORMUL 7 HOH *199(H2 O1) HELIX 1 1 ARG A 23 ASN A 28 5 6 HELIX 2 2 SER A 30 LEU A 42 1 13 HELIX 3 3 GLN A 59 LEU A 70 1 12 HELIX 4 4 LEU A 74 MET A 78 5 5 HELIX 5 5 ASP A 102 ALA A 118 1 17 HELIX 6 6 ASP A 135 SER A 149 1 15 HELIX 7 7 THR A 161 SER A 170 1 10 HELIX 8 8 GLN A 188 ASP A 193 1 6 HELIX 9 9 GLY A 194 ARG A 203 1 10 HELIX 10 10 LEU A 212 GLY A 214 5 3 HELIX 11 11 GLY A 215 ASP A 220 1 6 HELIX 12 12 PHE A 223 ASN A 238 1 16 HELIX 13 13 SER A 241 ARG A 252 1 12 HELIX 14 14 LYS A 265 VAL A 273 1 9 HELIX 15 15 GLU A 274 THR A 277 5 4 HELIX 16 16 THR A 281 GLY A 294 1 14 HELIX 17 17 ARG B 23 TRP B 27 5 5 HELIX 18 18 SER B 30 LEU B 44 1 15 HELIX 19 19 ILE B 54 GLN B 59 1 6 HELIX 20 20 GLN B 59 LEU B 70 1 12 HELIX 21 21 ASP B 102 LEU B 117 1 16 HELIX 22 22 ASP B 135 GLY B 150 1 16 HELIX 23 23 THR B 161 SER B 170 1 10 HELIX 24 24 GLN B 188 ASP B 193 1 6 HELIX 25 25 GLY B 194 ARG B 203 1 10 HELIX 26 26 PHE B 223 ASN B 238 1 16 HELIX 27 27 SER B 241 ARG B 252 1 12 HELIX 28 28 LYS B 265 GLU B 274 1 10 HELIX 29 29 THR B 281 GLY B 294 1 14 HELIX 30 30 ARG C 23 ASN C 28 1 6 HELIX 31 31 SER C 30 ASP C 43 1 14 HELIX 32 32 ILE C 54 GLN C 59 1 6 HELIX 33 33 GLN C 59 LEU C 70 1 12 HELIX 34 34 LEU C 74 MET C 78 5 5 HELIX 35 35 ASP C 102 LEU C 117 1 16 HELIX 36 36 ASP C 135 GLN C 148 1 14 HELIX 37 37 THR C 161 SER C 170 1 10 HELIX 38 38 GLN C 188 LEU C 192 5 5 HELIX 39 39 GLY C 194 LEU C 202 1 9 HELIX 40 40 LEU C 212 GLY C 214 5 3 HELIX 41 41 GLY C 215 ASP C 220 1 6 HELIX 42 42 PHE C 223 ASN C 238 1 16 HELIX 43 43 SER C 241 ARG C 252 1 12 HELIX 44 44 LYS C 265 ALA C 275 1 11 HELIX 45 45 GLU C 276 LEU C 278 5 3 HELIX 46 46 THR C 281 GLY C 294 1 14 SHEET 1 AA 2 ARG A 4 THR A 6 0 SHEET 2 AA 2 GLU A 13 SER A 15 -1 O PHE A 14 N ILE A 5 SHEET 1 AB 9 VAL A 18 GLY A 20 0 SHEET 2 AB 9 LEU A 258 ILE A 261 1 O PRO A 259 N VAL A 18 SHEET 3 AB 9 MET A 207 TRP A 209 1 O ALA A 208 N ILE A 260 SHEET 4 AB 9 ASN A 179 GLU A 182 1 O VAL A 181 N TRP A 209 SHEET 5 AB 9 VAL A 152 SER A 158 1 O VAL A 157 N GLN A 180 SHEET 6 AB 9 LEU A 122 ILE A 127 1 O LEU A 122 N ARG A 153 SHEET 7 AB 9 GLU A 79 CYS A 84 1 O ILE A 80 N ASP A 123 SHEET 8 AB 9 THR A 48 ASP A 50 1 O VAL A 49 N VAL A 81 SHEET 9 AB 9 VAL A 18 GLY A 20 1 O MET A 19 N ASP A 50 SHEET 1 AC 2 ILE A 86 ALA A 87 0 SHEET 2 AC 2 HIS A 98 TYR A 99 -1 O HIS A 98 N ALA A 87 SHEET 1 BA 2 ARG B 4 THR B 6 0 SHEET 2 BA 2 GLU B 13 SER B 15 -1 O PHE B 14 N ILE B 5 SHEET 1 BB 7 ASN B 179 GLN B 180 0 SHEET 2 BB 7 VAL B 152 SER B 158 1 O VAL B 157 N GLN B 180 SHEET 3 BB 7 LEU B 122 ILE B 127 1 O LEU B 122 N ARG B 153 SHEET 4 BB 7 GLU B 79 CYS B 84 1 O ILE B 80 N ASP B 123 SHEET 5 BB 7 THR B 48 ASP B 50 1 O VAL B 49 N VAL B 81 SHEET 6 BB 7 VAL B 18 GLY B 20 1 O MET B 19 N ASP B 50 SHEET 7 BB 7 ILE B 260 ILE B 261 1 O ILE B 261 N GLY B 20 SHEET 1 BC 2 ILE B 86 ALA B 87 0 SHEET 2 BC 2 HIS B 98 TYR B 99 -1 O HIS B 98 N ALA B 87 SHEET 1 CA 2 ARG C 4 THR C 6 0 SHEET 2 CA 2 GLU C 13 SER C 15 -1 O PHE C 14 N ILE C 5 SHEET 1 CB 9 VAL C 18 GLY C 20 0 SHEET 2 CB 9 LEU C 258 ILE C 261 1 O PRO C 259 N VAL C 18 SHEET 3 CB 9 MET C 207 TRP C 209 1 O ALA C 208 N ILE C 260 SHEET 4 CB 9 ASN C 179 GLU C 182 1 O VAL C 181 N TRP C 209 SHEET 5 CB 9 VAL C 152 SER C 158 1 O VAL C 157 N GLN C 180 SHEET 6 CB 9 LEU C 122 ILE C 127 1 O LEU C 122 N ARG C 153 SHEET 7 CB 9 GLU C 79 CYS C 84 1 O ILE C 80 N LEU C 124 SHEET 8 CB 9 THR C 48 ASP C 50 1 O VAL C 49 N VAL C 81 SHEET 9 CB 9 VAL C 18 GLY C 20 1 O MET C 19 N ASP C 50 SHEET 1 CC 2 ILE C 86 ALA C 87 0 SHEET 2 CC 2 HIS C 98 TYR C 99 -1 O HIS C 98 N ALA C 87 SITE 1 AC1 24 GLY A 20 TRP A 22 ARG A 23 ASP A 50 SITE 2 AC1 24 TYR A 55 HIS A 128 ARG A 129 SER A 158 SITE 3 AC1 24 ASN A 159 GLN A 180 TRP A 209 SER A 210 SITE 4 AC1 24 LEU A 212 GLY A 213 GLY A 214 GLY A 215 SITE 5 AC1 24 PHE A 218 GLU A 243 ILE A 260 GLY A 262 SITE 6 AC1 24 SER A 263 GLY A 264 LYS A 265 ARG A 268 SITE 1 AC2 20 GLY B 20 TRP B 22 ARG B 23 ASP B 50 SITE 2 AC2 20 TYR B 55 HIS B 128 ARG B 129 SER B 158 SITE 3 AC2 20 ASN B 159 GLN B 180 TRP B 209 SER B 210 SITE 4 AC2 20 PHE B 218 ILE B 260 GLY B 262 SER B 263 SITE 5 AC2 20 GLY B 264 LYS B 265 ARG B 268 TYR C 222 SITE 1 AC3 24 GLY C 20 TRP C 22 ARG C 23 ASP C 50 SITE 2 AC3 24 TYR C 55 HIS C 128 ARG C 129 SER C 158 SITE 3 AC3 24 ASN C 159 GLN C 180 TRP C 209 SER C 210 SITE 4 AC3 24 LEU C 212 GLY C 213 GLY C 214 GLY C 215 SITE 5 AC3 24 PHE C 218 GLU C 243 ILE C 260 GLY C 262 SITE 6 AC3 24 SER C 263 GLY C 264 LYS C 265 ARG C 268 CRYST1 174.529 174.529 97.923 90.00 90.00 120.00 H 3 27 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005730 0.003308 0.000000 0.00000 SCALE2 0.000000 0.006616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010212 0.00000 MTRIX1 1 -0.118185 -0.986255 -0.115467 -23.29900 1 MTRIX2 1 0.018144 0.114118 -0.993302 35.73400 1 MTRIX3 1 0.992826 -0.119488 0.004408 58.74100 1 MTRIX1 2 -0.080510 0.020730 0.996540 38.48800 1 MTRIX2 2 -0.993240 0.082240 -0.081950 55.96800 1 MTRIX3 2 -0.083650 -0.996400 0.013970 25.24100 1