HEADER INHIBITOR 08-MAY-03 1OGQ TITLE THE CRYSTAL STRUCTURE OF PGIP (POLYGALACTURONASE INHIBITING PROTEIN), TITLE 2 A LEUCINE RICH REPEAT PROTEIN INVOLVED IN PLANT DEFENSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYGALACTURONASE INHIBITING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PGIP-2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PHASEOLUS VULGARIS; SOURCE 3 ORGANISM_COMMON: KIDNEY BEAN; SOURCE 4 ORGANISM_TAXID: 3885; SOURCE 5 EXPRESSION_SYSTEM: NICOTIANA BENTHAMIANA; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 4100; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PVX KEYWDS POLYGALACTURONASE INHIBITING PROTEIN, INHIBITOR EXPDTA X-RAY DIFFRACTION AUTHOR A.DI MATTEO,L.FEDERICI,B.MATTEI,G.SALVI,K.A.JOHNSON,C.SAVINO,G.DE AUTHOR 2 LORENZO,D.TSERNOGLOU,F.CERVONE REVDAT 6 23-OCT-24 1OGQ 1 HETSYN REVDAT 5 29-JUL-20 1OGQ 1 COMPND REMARK HETNAM SITE REVDAT 4 25-JAN-12 1OGQ 1 REMARK VERSN HETSYN FORMUL REVDAT 3 24-FEB-09 1OGQ 1 VERSN REVDAT 2 12-JUL-05 1OGQ 1 JRNL REVDAT 1 24-JUL-03 1OGQ 0 JRNL AUTH A.DI MATTEO,L.FEDERICI,B.MATTEI,G.SALVI,K.A.JOHNSON, JRNL AUTH 2 C.SAVINO,G.DE LORENZO,D.TSERNOGLOU,F.CERVONE JRNL TITL THE CRYSTAL STRUCTURE OF POLYGALACTURONASE-INHIBITING JRNL TITL 2 PROTEIN (PGIP), A LEUCINE-RICH REPEAT PROTEIN INVOLVED IN JRNL TITL 3 PLANT DEFENSE JRNL REF PROC.NATL.ACAD.SCI.USA V. 100 10124 2003 JRNL REFN ISSN 0027-8424 JRNL PMID 12904578 JRNL DOI 10.1073/PNAS.1733690100 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 34715 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2392 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 60 REMARK 3 SOLVENT ATOMS : 320 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OGQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 08-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1290012666. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-01 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.60 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ELETTRA REMARK 200 BEAMLINE : 5.2R REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.95 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34715 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : 65.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.45000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SIRAS REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 4.60 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 67.42000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.72500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 67.42000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 32.72500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 INHIBITOR OF FUNGAL POLYGALACTURONASE. THE PROTEIN IS AN REMARK 400 IMPORTANT FACTOR FOR PLANT RESISTANCE TO PHYTOPATHOGENIC FUNGI. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 2049 O HOH A 2050 1.90 REMARK 500 O4 NAG A 1317 O HOH A 2315 1.93 REMARK 500 O HOH A 2001 O HOH A 2312 2.03 REMARK 500 NZ LYS A 230 O HOH A 2234 2.05 REMARK 500 O HOH A 2256 O HOH A 2258 2.05 REMARK 500 O HOH A 2048 O HOH A 2049 2.08 REMARK 500 O HOH A 2158 O HOH A 2161 2.09 REMARK 500 NZ LYS A 125 O HOH A 2149 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 2202 O HOH A 2298 3556 1.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 51 CD - NE - CZ ANGL. DEV. = 11.4 DEGREES REMARK 500 SER A 58 N - CA - CB ANGL. DEV. = -9.6 DEGREES REMARK 500 TYR A 107 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 160 NE - CZ - NH1 ANGL. DEV. = -4.8 DEGREES REMARK 500 ASP A 167 CB - CG - OD1 ANGL. DEV. = 5.6 DEGREES REMARK 500 ARG A 183 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG A 185 CG - CD - NE ANGL. DEV. = -14.2 DEGREES REMARK 500 ARG A 185 NH1 - CZ - NH2 ANGL. DEV. = 15.8 DEGREES REMARK 500 ARG A 185 NE - CZ - NH1 ANGL. DEV. = -5.3 DEGREES REMARK 500 ARG A 185 NE - CZ - NH2 ANGL. DEV. = -10.6 DEGREES REMARK 500 ASP A 220 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 252 NE - CZ - NH2 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 255 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ASP A 294 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 CYS A 303 CA - CB - SG ANGL. DEV. = 7.9 DEGREES REMARK 500 SER A 307 CA - C - O ANGL. DEV. = -15.7 DEGREES REMARK 500 PRO A 308 CA - N - CD ANGL. DEV. = -9.2 DEGREES REMARK 500 PRO A 308 N - CA - CB ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 135 -139.18 -123.26 REMARK 500 SER A 138 -163.12 -128.26 REMARK 500 ASN A 159 -144.63 -123.25 REMARK 500 ILE A 181 35.30 -142.05 REMARK 500 ASN A 184 -151.71 -135.73 REMARK 500 ASN A 231 -154.02 -132.68 REMARK 500 CYS A 303 43.83 -150.71 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 307 PRO A 308 44.45 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 307 18.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2020 DISTANCE = 5.85 ANGSTROMS REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 1314 REMARK 610 NAG A 1315 REMARK 610 NAG A 1316 REMARK 610 NAG A 1317 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE PGIP2_PHAVU IN THE SWISS-PROT REMARK 999 DATABASE CONTAINS THE SIGNAL PEPTIDE DBREF 1OGQ A 1 313 UNP P58822 PGI2_PHAVU 30 342 SEQRES 1 A 313 GLU LEU CYS ASN PRO GLN ASP LYS GLN ALA LEU LEU GLN SEQRES 2 A 313 ILE LYS LYS ASP LEU GLY ASN PRO THR THR LEU SER SER SEQRES 3 A 313 TRP LEU PRO THR THR ASP CYS CYS ASN ARG THR TRP LEU SEQRES 4 A 313 GLY VAL LEU CYS ASP THR ASP THR GLN THR TYR ARG VAL SEQRES 5 A 313 ASN ASN LEU ASP LEU SER GLY LEU ASN LEU PRO LYS PRO SEQRES 6 A 313 TYR PRO ILE PRO SER SER LEU ALA ASN LEU PRO TYR LEU SEQRES 7 A 313 ASN PHE LEU TYR ILE GLY GLY ILE ASN ASN LEU VAL GLY SEQRES 8 A 313 PRO ILE PRO PRO ALA ILE ALA LYS LEU THR GLN LEU HIS SEQRES 9 A 313 TYR LEU TYR ILE THR HIS THR ASN VAL SER GLY ALA ILE SEQRES 10 A 313 PRO ASP PHE LEU SER GLN ILE LYS THR LEU VAL THR LEU SEQRES 11 A 313 ASP PHE SER TYR ASN ALA LEU SER GLY THR LEU PRO PRO SEQRES 12 A 313 SER ILE SER SER LEU PRO ASN LEU VAL GLY ILE THR PHE SEQRES 13 A 313 ASP GLY ASN ARG ILE SER GLY ALA ILE PRO ASP SER TYR SEQRES 14 A 313 GLY SER PHE SER LYS LEU PHE THR SER MET THR ILE SER SEQRES 15 A 313 ARG ASN ARG LEU THR GLY LYS ILE PRO PRO THR PHE ALA SEQRES 16 A 313 ASN LEU ASN LEU ALA PHE VAL ASP LEU SER ARG ASN MET SEQRES 17 A 313 LEU GLU GLY ASP ALA SER VAL LEU PHE GLY SER ASP LYS SEQRES 18 A 313 ASN THR GLN LYS ILE HIS LEU ALA LYS ASN SER LEU ALA SEQRES 19 A 313 PHE ASP LEU GLY LYS VAL GLY LEU SER LYS ASN LEU ASN SEQRES 20 A 313 GLY LEU ASP LEU ARG ASN ASN ARG ILE TYR GLY THR LEU SEQRES 21 A 313 PRO GLN GLY LEU THR GLN LEU LYS PHE LEU HIS SER LEU SEQRES 22 A 313 ASN VAL SER PHE ASN ASN LEU CYS GLY GLU ILE PRO GLN SEQRES 23 A 313 GLY GLY ASN LEU GLN ARG PHE ASP VAL SER ALA TYR ALA SEQRES 24 A 313 ASN ASN LYS CYS LEU CYS GLY SER PRO LEU PRO ALA CYS SEQRES 25 A 313 THR HET NAG A1314 14 HET NAG A1315 14 HET NAG A1316 14 HET NAG A1317 14 HET ACT A1318 4 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ACT ACETATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 2 NAG 4(C8 H15 N O6) FORMUL 6 ACT C2 H3 O2 1- FORMUL 7 HOH *320(H2 O) HELIX 1 1 ASN A 4 LEU A 18 1 15 HELIX 2 2 PRO A 21 SER A 25 5 5 HELIX 3 3 PRO A 69 LEU A 75 5 7 HELIX 4 4 PRO A 94 LEU A 100 5 7 HELIX 5 5 PRO A 118 ILE A 124 5 7 HELIX 6 6 PRO A 142 LEU A 148 5 7 HELIX 7 7 PRO A 166 SER A 171 5 6 HELIX 8 8 PRO A 191 LEU A 197 5 7 HELIX 9 9 ALA A 213 PHE A 217 5 5 HELIX 10 10 LEU A 237 VAL A 240 5 4 HELIX 11 11 PRO A 261 LEU A 267 5 7 HELIX 12 12 ASN A 289 PHE A 293 5 5 HELIX 13 13 ASP A 294 TYR A 298 5 5 SHEET 1 AA11 VAL A 41 CYS A 43 0 SHEET 2 AA11 VAL A 52 SER A 58 -1 N ASN A 53 O LEU A 42 SHEET 3 AA11 PHE A 80 ILE A 86 1 O PHE A 80 N LEU A 55 SHEET 4 AA11 TYR A 105 THR A 111 1 O TYR A 105 N LEU A 81 SHEET 5 AA11 THR A 129 ASP A 131 1 O THR A 129 N LEU A 106 SHEET 6 AA11 GLY A 153 THR A 155 1 O GLY A 153 N LEU A 130 SHEET 7 AA11 SER A 178 THR A 180 1 O SER A 178 N ILE A 154 SHEET 8 AA11 PHE A 201 ASP A 203 1 O PHE A 201 N MET A 179 SHEET 9 AA11 LYS A 225 HIS A 227 1 O LYS A 225 N VAL A 202 SHEET 10 AA11 GLY A 248 ASP A 250 1 O GLY A 248 N ILE A 226 SHEET 11 AA11 SER A 272 ASN A 274 1 O SER A 272 N LEU A 249 SHEET 1 AB 2 TYR A 66 PRO A 67 0 SHEET 2 AB 2 LEU A 89 VAL A 90 1 N VAL A 90 O TYR A 66 SHEET 1 AC 2 SER A 114 ALA A 116 0 SHEET 2 AC 2 ALA A 136 SER A 138 1 O ALA A 136 N GLY A 115 SHEET 1 AD 4 SER A 162 ALA A 164 0 SHEET 2 AD 4 ARG A 185 LYS A 189 1 O ARG A 185 N GLY A 163 SHEET 3 AD 4 MET A 208 GLY A 211 1 O MET A 208 N GLY A 188 SHEET 4 AD 4 SER A 232 LEU A 233 1 O SER A 232 N GLY A 211 SHEET 1 AE 3 TYR A 257 GLY A 258 0 SHEET 2 AE 3 ASN A 279 GLU A 283 1 O ASN A 279 N GLY A 258 SHEET 3 AE 3 CYS A 303 CYS A 305 1 O CYS A 303 N GLY A 282 SSBOND 1 CYS A 3 CYS A 33 1555 1555 2.06 SSBOND 2 CYS A 34 CYS A 43 1555 1555 2.06 SSBOND 3 CYS A 281 CYS A 303 1555 1555 2.02 SSBOND 4 CYS A 305 CYS A 312 1555 1555 2.02 CRYST1 134.840 65.450 34.640 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015279 0.000000 0.00000 SCALE3 0.000000 0.000000 0.028868 0.00000