data_1OKF # _entry.id 1OKF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1OKF PDBE EBI-13158 WWPDB D_1290013158 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OKF _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-07-23 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Nielsen, J.T.' 1 'Stein, P.C.' 2 'Petersen, M.' 3 # _citation.id primary _citation.title 'NMR Structure of an Alpha-L-Lna:RNA Hybrid: Structural Implications for Rnase H Recognition' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 31 _citation.page_first 5858 _citation.page_last ? _citation.year 2003 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 14530434 _citation.pdbx_database_id_DOI 10.1093/NAR/GKG800 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Nielsen, J.T.' 1 primary 'Stein, P.C.' 2 primary 'Petersen, M.' 3 # _cell.entry_id 1OKF _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OKF _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*ATLP*GP*AP*ATLP*AP*ATLP*GP*CP)-3'" 2814.843 1 ? ? ? 'ALPHA-L-LNA THYMINE MODIFICATIONS AT POSITIONS 2,5 AND 7' 2 polymer syn "5'-R(*GP*CP*AP*UP*AP*UP*CP*AP*GP)-3'" 2855.767 1 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name ALPHA-L-LNA # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no yes '(DC)(ATL)(DG)(DA)(ATL)(DA)(ATL)(DG)(DC)' CTGATATGC A ? 2 polyribonucleotide no no GCAUAUCAG GCAUAUCAG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 ATL n 1 3 DG n 1 4 DA n 1 5 ATL n 1 6 DA n 1 7 ATL n 1 8 DG n 1 9 DC n 2 1 G n 2 2 C n 2 3 A n 2 4 U n 2 5 A n 2 6 U n 2 7 C n 2 8 A n 2 9 G n # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 PDB 1OKF 1 ? ? 1OKF ? 2 PDB 1OKF 2 ? ? 1OKF ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1OKF A 1 ? 9 ? 1OKF 1 ? 9 ? 1 9 2 2 1OKF B 1 ? 9 ? 1OKF 10 ? 18 ? 10 18 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ATL 'RNA linking' n '[(1S,3R,4S,7R)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGEN PHOSPHATE' ? 'C11 H15 N2 O9 P' 350.219 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 NOESY 1 2 1 COSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100 MM NACL' _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '3 MM NUCLEIC ACID, 100 MM NACL, 10 MM PHOSPHATE BUFFER' # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model INOVA _pdbx_nmr_spectrometer.manufacturer Varian _pdbx_nmr_spectrometer.field_strength 800 # _pdbx_nmr_refine.entry_id 1OKF _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details 'REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION ABOVE' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1OKF _pdbx_nmr_details.text 'THE STRUCTURE WAS DETERMINED USING 1H,1H-NOES FROM NOESY AND WATERGATE NOESY EXPERIMENTS' # _pdbx_nmr_ensemble.entry_id 1OKF _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1OKF _pdbx_nmr_representative.conformer_id 16 _pdbx_nmr_representative.selection_criteria ? # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal refinement AMBER ? 'PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM, FERGUSON, SEIBEL,SINGH,WEINER,KOLLMAN' 1 'structure solution' FELIX ? ? 2 'structure solution' AMBER ? ? 3 # _exptl.entry_id 1OKF _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1OKF _struct.title 'NMR structure of an alpha-L-LNA:RNA hybrid' _struct.pdbx_descriptor "5'-D(*C)-R(P*(ATL))-D(P*GP*A)-R(P*(ATL))-D(P*A)-R(P*(ATL))-D(P*GP*C)-3'" _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1OKF _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'DNA-RNA HYBRID, DNA/RNA HYBRID, ALPHA-L-LNA, LNA, RNA, RNASE H, LOCKED NUCLEIC ACID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A DC 1 "O3'" ? ? ? 1_555 A ATL 2 P ? ? A DC 1 A ATL 2 1_555 ? ? ? ? ? ? ? 1.617 ? covale2 covale ? ? A ATL 2 "O3'" ? ? ? 1_555 A DG 3 P ? ? A ATL 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.605 ? covale3 covale ? ? A DA 4 "O3'" ? ? ? 1_555 A ATL 5 P ? ? A DA 4 A ATL 5 1_555 ? ? ? ? ? ? ? 1.628 ? covale4 covale ? ? A ATL 5 "O3'" ? ? ? 1_555 A DA 6 P ? ? A ATL 5 A DA 6 1_555 ? ? ? ? ? ? ? 1.619 ? covale5 covale ? ? A DA 6 "O3'" ? ? ? 1_555 A ATL 7 P ? ? A DA 6 A ATL 7 1_555 ? ? ? ? ? ? ? 1.622 ? covale6 covale ? ? A ATL 7 "O3'" ? ? ? 1_555 A DG 8 P ? ? A ATL 7 A DG 8 1_555 ? ? ? ? ? ? ? 1.627 ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B G 9 N1 ? ? A DC 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B G 9 O6 ? ? A DC 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B G 9 N2 ? ? A DC 1 B G 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A ATL 2 N3 ? ? ? 1_555 B A 8 N1 ? ? A ATL 2 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A ATL 2 O4 ? ? ? 1_555 B A 8 N6 ? ? A ATL 2 B A 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A DG 3 N1 ? ? ? 1_555 B C 7 N3 ? ? A DG 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A DG 3 N2 ? ? ? 1_555 B C 7 O2 ? ? A DG 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B C 7 N4 ? ? A DG 3 B C 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B U 6 N3 ? ? A DA 4 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B U 6 O4 ? ? A DA 4 B U 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? A ATL 5 N3 ? ? ? 1_555 B A 5 N1 ? ? A ATL 5 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? A ATL 5 O4 ? ? ? 1_555 B A 5 N6 ? ? A ATL 5 B A 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B U 4 N3 ? ? A DA 6 B U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B U 4 O4 ? ? A DA 6 B U 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A ATL 7 N3 ? ? ? 1_555 B A 3 N1 ? ? A ATL 7 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A ATL 7 O4 ? ? ? 1_555 B A 3 N6 ? ? A ATL 7 B A 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B C 2 N3 ? ? A DG 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B C 2 O2 ? ? A DG 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B C 2 N4 ? ? A DG 8 B C 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B G 1 N1 ? ? A DC 9 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B G 1 O6 ? ? A DC 9 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B G 1 N2 ? ? A DC 9 B G 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _database_PDB_matrix.entry_id 1OKF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1OKF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 ATL 2 2 2 ATL ATL A . n A 1 3 DG 3 3 3 DG DG A . n A 1 4 DA 4 4 4 DA DA A . n A 1 5 ATL 5 5 5 ATL ATL A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 ATL 7 7 7 ATL ATL A . n A 1 8 DG 8 8 8 DG DG A . n A 1 9 DC 9 9 9 DC DC A . n B 2 1 G 1 10 10 G G B . n B 2 2 C 2 11 11 C C B . n B 2 3 A 3 12 12 A A B . n B 2 4 U 4 13 13 U U B . n B 2 5 A 5 14 14 A A B . n B 2 6 U 6 15 15 U U B . n B 2 7 C 7 16 16 C C B . n B 2 8 A 8 17 17 A A B . n B 2 9 G 9 18 18 G G B . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ATL 2 A ATL 2 ? DT ? 2 A ATL 5 A ATL 5 ? DT ? 3 A ATL 7 A ATL 7 ? DT ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-10-09 2 'Structure model' 1 1 2011-05-08 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.574 1.512 0.062 0.007 N 2 2 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.574 1.512 0.062 0.007 N 3 3 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.575 1.512 0.063 0.007 N 4 4 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.572 1.512 0.060 0.007 N 5 5 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.574 1.512 0.062 0.007 N 6 6 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.573 1.512 0.061 0.007 N 7 7 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.572 1.512 0.060 0.007 N 8 8 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.575 1.512 0.063 0.007 N 9 9 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.573 1.512 0.061 0.007 N 10 10 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.574 1.512 0.062 0.007 N 11 11 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.575 1.512 0.063 0.007 N 12 12 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.573 1.512 0.061 0.007 N 13 13 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.575 1.512 0.063 0.007 N 14 14 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.570 1.512 0.058 0.007 N 15 15 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.573 1.512 0.061 0.007 N 16 16 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.575 1.512 0.063 0.007 N 17 17 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.573 1.512 0.061 0.007 N 18 18 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.574 1.512 0.062 0.007 N 19 19 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.574 1.512 0.062 0.007 N 20 20 "C5'" A DA 4 ? ? "C4'" A DA 4 ? ? 1.573 1.512 0.061 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 110.54 106.00 4.54 0.60 N 2 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.65 108.30 2.35 0.30 N 3 1 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.93 108.30 3.63 0.30 N 4 1 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.19 106.00 4.19 0.60 N 5 1 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.74 102.50 8.24 1.20 N 6 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.41 108.30 3.11 0.30 N 7 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.65 108.30 2.35 0.30 N 8 1 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.63 108.50 5.13 0.70 N 9 1 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.81 109.80 6.01 0.90 N 10 1 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.27 108.50 4.77 0.70 N 11 1 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.41 101.50 5.91 0.80 N 12 1 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 112.93 108.50 4.43 0.70 N 13 1 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.64 108.50 6.14 0.70 N 14 2 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 110.79 106.00 4.79 0.60 N 15 2 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.18 108.30 1.88 0.30 N 16 2 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.14 108.30 4.84 0.30 N 17 2 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.75 106.00 4.75 0.60 N 18 2 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.87 102.50 8.37 1.20 N 19 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.38 108.30 3.08 0.30 N 20 2 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.49 108.30 3.19 0.30 N 21 2 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.47 108.50 4.97 0.70 N 22 2 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.85 109.80 6.05 0.90 N 23 2 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.05 108.50 4.55 0.70 N 24 2 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 106.98 101.50 5.48 0.80 N 25 2 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.45 108.50 5.95 0.70 N 26 3 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 110.32 106.00 4.32 0.60 N 27 3 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.45 108.30 4.15 0.30 N 28 3 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.43 106.00 4.43 0.60 N 29 3 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.98 102.50 8.48 1.20 N 30 3 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.61 108.30 2.31 0.30 N 31 3 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.01 108.50 4.51 0.70 N 32 3 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.35 108.50 4.85 0.70 N 33 3 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.84 108.50 4.34 0.70 N 34 3 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.28 109.80 5.48 0.90 N 35 3 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.37 101.50 5.87 0.80 N 36 3 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 112.76 108.50 4.26 0.70 N 37 3 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.58 108.50 6.08 0.70 N 38 4 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 111.48 106.00 5.48 0.60 N 39 4 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.51 108.30 2.21 0.30 N 40 4 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.73 108.30 5.43 0.30 N 41 4 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.29 106.00 4.29 0.60 N 42 4 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.93 102.50 8.43 1.20 N 43 4 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.04 108.30 2.74 0.30 N 44 4 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.18 108.30 1.88 0.30 N 45 4 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "O4'" B U 13 ? ? 115.23 109.80 5.43 0.90 N 46 4 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 116.17 109.80 6.37 0.90 N 47 4 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.10 108.50 4.60 0.70 N 48 4 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.65 109.80 5.85 0.90 N 49 4 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 106.81 101.50 5.31 0.80 N 50 4 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 113.15 108.50 4.65 0.70 N 51 4 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 115.11 108.50 6.61 0.70 N 52 5 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 110.83 106.00 4.83 0.60 N 53 5 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.26 108.30 4.96 0.30 N 54 5 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.44 106.00 4.44 0.60 N 55 5 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.89 102.50 8.39 1.20 N 56 5 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.22 108.30 2.92 0.30 N 57 5 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.82 108.30 2.52 0.30 N 58 5 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.57 109.80 5.77 0.90 N 59 5 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 106.94 101.50 5.44 0.80 N 60 5 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.84 108.50 6.34 0.70 N 61 6 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 111.06 106.00 5.06 0.60 N 62 6 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.26 108.30 1.96 0.30 N 63 6 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.73 108.30 4.43 0.30 N 64 6 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.44 106.00 4.44 0.60 N 65 6 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.96 102.50 8.46 1.20 N 66 6 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.03 108.30 2.73 0.30 N 67 6 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.26 108.30 1.96 0.30 N 68 6 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "O4'" B U 13 ? ? 115.25 109.80 5.45 0.90 N 69 6 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 116.01 109.80 6.21 0.90 N 70 6 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.90 108.50 4.40 0.70 N 71 6 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.51 109.80 5.71 0.90 N 72 6 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.22 101.50 5.72 0.80 N 73 6 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 113.11 108.50 4.61 0.70 N 74 6 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 115.00 108.50 6.50 0.70 N 75 7 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 111.44 106.00 5.44 0.60 N 76 7 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.16 108.30 1.86 0.30 N 77 7 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.44 108.30 5.14 0.30 N 78 7 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.35 106.00 4.35 0.60 N 79 7 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.94 102.50 8.44 1.20 N 80 7 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.35 108.30 3.05 0.30 N 81 7 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.47 108.30 2.17 0.30 N 82 7 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.29 108.50 4.79 0.70 N 83 7 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 116.21 109.80 6.41 0.90 N 84 7 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.05 108.50 4.55 0.70 N 85 7 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.53 109.80 5.73 0.90 N 86 7 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.02 101.50 5.52 0.80 N 87 7 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 112.83 108.50 4.33 0.70 N 88 7 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.76 108.50 6.26 0.70 N 89 8 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 110.78 106.00 4.78 0.60 N 90 8 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.44 108.30 2.14 0.30 N 91 8 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 111.07 108.30 2.77 0.30 N 92 8 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.46 106.00 4.46 0.60 N 93 8 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 111.10 102.50 8.60 1.20 N 94 8 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.94 108.30 2.64 0.30 N 95 8 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.33 108.30 2.03 0.30 N 96 8 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.67 109.80 5.87 0.90 N 97 8 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.32 108.50 4.82 0.70 N 98 8 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.34 109.80 5.54 0.90 N 99 8 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 106.71 101.50 5.21 0.80 N 100 8 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 115.06 108.50 6.56 0.70 N 101 9 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 111.14 106.00 5.14 0.60 N 102 9 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.89 108.30 4.59 0.30 N 103 9 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.47 106.00 4.47 0.60 N 104 9 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.90 102.50 8.40 1.20 N 105 9 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.79 108.30 3.49 0.30 N 106 9 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.38 108.30 3.08 0.30 N 107 9 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.63 108.50 5.13 0.70 N 108 9 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.79 109.80 5.99 0.90 N 109 9 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.17 108.50 4.67 0.70 N 110 9 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.37 109.80 5.57 0.90 N 111 9 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.18 101.50 5.68 0.80 N 112 9 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.67 108.50 6.17 0.70 N 113 10 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 111.11 106.00 5.11 0.60 N 114 10 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.34 108.30 5.04 0.30 N 115 10 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.19 106.00 4.19 0.60 N 116 10 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.82 102.50 8.32 1.20 N 117 10 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.44 108.30 3.14 0.30 N 118 10 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.87 108.30 2.57 0.30 N 119 10 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 112.88 108.50 4.38 0.70 N 120 10 "O4'" B U 15 ? ? "C1'" B U 15 ? ? N1 B U 15 ? ? 113.30 108.50 4.80 0.70 N 121 10 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.31 108.50 4.81 0.70 N 122 10 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.49 109.80 5.69 0.90 N 123 10 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.30 101.50 5.80 0.80 N 124 10 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 113.30 108.50 4.80 0.70 N 125 10 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 115.11 108.50 6.61 0.70 N 126 11 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 110.95 106.00 4.95 0.60 N 127 11 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.18 108.30 1.88 0.30 N 128 11 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.30 108.30 4.00 0.30 N 129 11 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.60 106.00 4.60 0.60 N 130 11 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 111.00 102.50 8.50 1.20 N 131 11 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.47 108.30 3.17 0.30 N 132 11 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.73 108.30 2.43 0.30 N 133 11 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.72 109.80 5.92 0.90 N 134 11 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.95 108.50 4.45 0.70 N 135 11 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.33 101.50 5.83 0.80 N 136 11 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 112.77 108.50 4.27 0.70 N 137 11 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.79 108.50 6.29 0.70 N 138 12 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 111.39 106.00 5.39 0.60 N 139 12 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.10 108.30 1.80 0.30 N 140 12 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.68 108.30 5.38 0.30 N 141 12 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.41 106.00 4.41 0.60 N 142 12 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.79 102.50 8.29 1.20 N 143 12 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.69 108.30 3.39 0.30 N 144 12 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.57 108.30 3.27 0.30 N 145 12 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "O4'" B U 13 ? ? 115.21 109.80 5.41 0.90 N 146 12 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 116.19 109.80 6.39 0.90 N 147 12 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.17 108.50 4.67 0.70 N 148 12 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.62 109.80 5.82 0.90 N 149 12 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.29 101.50 5.79 0.80 N 150 12 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 112.88 108.50 4.38 0.70 N 151 12 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.73 108.50 6.23 0.70 N 152 13 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 110.72 106.00 4.72 0.60 N 153 13 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.48 108.30 2.18 0.30 N 154 13 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.70 108.30 4.40 0.30 N 155 13 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.35 106.00 4.35 0.60 N 156 13 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.93 102.50 8.43 1.20 N 157 13 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.27 108.30 2.97 0.30 N 158 13 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.54 108.30 2.24 0.30 N 159 13 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.17 108.50 4.67 0.70 N 160 13 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.57 109.80 5.77 0.90 N 161 13 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.09 108.50 4.59 0.70 N 162 13 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.26 109.80 5.46 0.90 N 163 13 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 106.96 101.50 5.46 0.80 N 164 13 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 112.71 108.50 4.21 0.70 N 165 13 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.86 108.50 6.36 0.70 N 166 14 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 110.53 106.00 4.53 0.60 N 167 14 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.84 108.30 4.54 0.30 N 168 14 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.39 106.00 4.39 0.60 N 169 14 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.86 102.50 8.36 1.20 N 170 14 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.75 108.30 3.45 0.30 N 171 14 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.31 108.30 3.01 0.30 N 172 14 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.47 108.50 4.97 0.70 N 173 14 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "O4'" B U 13 ? ? 115.29 109.80 5.49 0.90 N 174 14 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.70 109.80 5.90 0.90 N 175 14 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.26 101.50 5.76 0.80 N 176 14 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.73 108.50 6.23 0.70 N 177 15 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 111.03 106.00 5.03 0.60 N 178 15 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.12 108.30 1.82 0.30 N 179 15 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.04 108.30 4.74 0.30 N 180 15 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.41 106.00 4.41 0.60 N 181 15 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.94 102.50 8.44 1.20 N 182 15 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.23 108.30 2.93 0.30 N 183 15 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.48 108.30 2.18 0.30 N 184 15 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 112.72 108.50 4.22 0.70 N 185 15 "C5'" B U 13 ? ? "C4'" B U 13 ? ? "O4'" B U 13 ? ? 115.22 109.80 5.42 0.90 N 186 15 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.81 109.80 6.01 0.90 N 187 15 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.15 108.50 4.65 0.70 N 188 15 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.45 109.80 5.65 0.90 N 189 15 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.27 101.50 5.77 0.80 N 190 15 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.62 108.50 6.12 0.70 N 191 16 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 110.66 106.00 4.66 0.60 N 192 16 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.53 108.30 2.23 0.30 N 193 16 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.96 108.30 4.66 0.30 N 194 16 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.46 106.00 4.46 0.60 N 195 16 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 111.04 102.50 8.54 1.20 N 196 16 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.08 108.30 2.78 0.30 N 197 16 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.48 108.30 2.18 0.30 N 198 16 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.70 109.80 5.90 0.90 N 199 16 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.91 108.50 4.41 0.70 N 200 16 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.41 101.50 5.91 0.80 N 201 16 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.67 108.50 6.17 0.70 N 202 17 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 111.31 106.00 5.31 0.60 N 203 17 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.34 108.30 2.04 0.30 N 204 17 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.71 108.30 5.41 0.30 N 205 17 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.64 106.00 4.64 0.60 N 206 17 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.93 102.50 8.43 1.20 N 207 17 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.61 108.30 3.31 0.30 N 208 17 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 111.06 108.30 2.76 0.30 N 209 17 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.25 108.50 4.75 0.70 N 210 17 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 115.96 109.80 6.16 0.90 N 211 17 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.83 108.50 4.33 0.70 N 212 17 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 113.57 108.50 5.07 0.70 N 213 17 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 116.68 108.50 8.18 0.70 N 214 18 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 111.46 106.00 5.46 0.60 N 215 18 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.47 108.30 2.17 0.30 N 216 18 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.89 108.30 5.59 0.30 N 217 18 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.32 106.00 4.32 0.60 N 218 18 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.75 102.50 8.25 1.20 N 219 18 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.29 108.30 2.99 0.30 N 220 18 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.73 108.30 2.43 0.30 N 221 18 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 112.71 108.50 4.21 0.70 N 222 18 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 116.22 109.80 6.42 0.90 N 223 18 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 113.00 108.50 4.50 0.70 N 224 18 "C5'" B A 17 ? ? "C4'" B A 17 ? ? "O4'" B A 17 ? ? 115.45 109.80 5.65 0.90 N 225 18 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 106.65 101.50 5.15 0.80 N 226 18 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 112.71 108.50 4.21 0.70 N 227 18 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.96 108.50 6.46 0.70 N 228 19 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 111.41 106.00 5.41 0.60 N 229 19 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.17 108.30 1.87 0.30 N 230 19 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 112.30 108.30 4.00 0.30 N 231 19 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.38 106.00 4.38 0.60 N 232 19 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.64 102.50 8.14 1.20 N 233 19 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.24 108.30 2.94 0.30 N 234 19 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.83 108.30 2.53 0.30 N 235 19 "O4'" B C 11 ? ? "C1'" B C 11 ? ? N1 B C 11 ? ? 113.15 108.50 4.65 0.70 N 236 19 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 116.11 109.80 6.31 0.90 N 237 19 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.79 108.50 4.29 0.70 N 238 19 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 106.85 101.50 5.35 0.80 N 239 19 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 112.84 108.50 4.34 0.70 N 240 19 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.98 108.50 6.48 0.70 N 241 20 "O4'" A DG 3 ? ? "C4'" A DG 3 ? ? "C3'" A DG 3 ? ? 110.94 106.00 4.94 0.60 N 242 20 "O4'" A DA 6 ? ? "C1'" A DA 6 ? ? N9 A DA 6 ? ? 113.11 108.30 4.81 0.30 N 243 20 "O4'" A DG 8 ? ? "C4'" A DG 8 ? ? "C3'" A DG 8 ? ? 110.37 106.00 4.37 0.60 N 244 20 "C3'" A DG 8 ? ? "C2'" A DG 8 ? ? "C1'" A DG 8 ? ? 110.74 102.50 8.24 1.20 N 245 20 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 110.54 108.30 2.24 0.30 N 246 20 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.29 108.30 1.99 0.30 N 247 20 "C5'" B U 15 ? ? "C4'" B U 15 ? ? "O4'" B U 15 ? ? 116.06 109.80 6.26 0.90 N 248 20 "O4'" B C 16 ? ? "C1'" B C 16 ? ? N1 B C 16 ? ? 112.74 108.50 4.24 0.70 N 249 20 "C3'" B A 17 ? ? "C2'" B A 17 ? ? "C1'" B A 17 ? ? 107.40 101.50 5.90 0.80 N 250 20 "O4'" B A 17 ? ? "C1'" B A 17 ? ? N9 B A 17 ? ? 112.79 108.50 4.29 0.70 N 251 20 "O4'" B G 18 ? ? "C1'" B G 18 ? ? N9 B G 18 ? ? 114.72 108.50 6.22 0.70 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DC A 1 ? ? 0.082 'SIDE CHAIN' 2 1 A B 17 ? ? 0.112 'SIDE CHAIN' 3 2 DC A 1 ? ? 0.082 'SIDE CHAIN' 4 2 A B 17 ? ? 0.121 'SIDE CHAIN' 5 3 DC A 1 ? ? 0.072 'SIDE CHAIN' 6 3 DC A 9 ? ? 0.065 'SIDE CHAIN' 7 3 A B 17 ? ? 0.102 'SIDE CHAIN' 8 4 DC A 1 ? ? 0.073 'SIDE CHAIN' 9 4 A B 17 ? ? 0.103 'SIDE CHAIN' 10 5 DC A 1 ? ? 0.089 'SIDE CHAIN' 11 5 A B 17 ? ? 0.118 'SIDE CHAIN' 12 6 DC A 1 ? ? 0.070 'SIDE CHAIN' 13 6 A B 17 ? ? 0.101 'SIDE CHAIN' 14 7 DC A 1 ? ? 0.066 'SIDE CHAIN' 15 7 A B 17 ? ? 0.105 'SIDE CHAIN' 16 8 DC A 1 ? ? 0.080 'SIDE CHAIN' 17 8 A B 17 ? ? 0.102 'SIDE CHAIN' 18 9 DC A 1 ? ? 0.069 'SIDE CHAIN' 19 9 A B 17 ? ? 0.109 'SIDE CHAIN' 20 10 DC A 1 ? ? 0.069 'SIDE CHAIN' 21 10 A B 17 ? ? 0.103 'SIDE CHAIN' 22 11 DC A 1 ? ? 0.091 'SIDE CHAIN' 23 11 A B 17 ? ? 0.114 'SIDE CHAIN' 24 11 G B 18 ? ? 0.048 'SIDE CHAIN' 25 12 DC A 1 ? ? 0.063 'SIDE CHAIN' 26 12 A B 17 ? ? 0.109 'SIDE CHAIN' 27 13 DC A 1 ? ? 0.080 'SIDE CHAIN' 28 13 A B 17 ? ? 0.108 'SIDE CHAIN' 29 14 DC A 1 ? ? 0.078 'SIDE CHAIN' 30 14 DG A 3 ? ? 0.067 'SIDE CHAIN' 31 14 A B 17 ? ? 0.120 'SIDE CHAIN' 32 15 DC A 1 ? ? 0.068 'SIDE CHAIN' 33 15 A B 17 ? ? 0.110 'SIDE CHAIN' 34 16 DC A 1 ? ? 0.083 'SIDE CHAIN' 35 16 A B 17 ? ? 0.114 'SIDE CHAIN' 36 17 DC A 1 ? ? 0.076 'SIDE CHAIN' 37 17 A B 17 ? ? 0.094 'SIDE CHAIN' 38 17 G B 18 ? ? 0.062 'SIDE CHAIN' 39 18 DC A 1 ? ? 0.086 'SIDE CHAIN' 40 18 A B 17 ? ? 0.104 'SIDE CHAIN' 41 19 DC A 1 ? ? 0.062 'SIDE CHAIN' 42 19 A B 17 ? ? 0.109 'SIDE CHAIN' 43 20 DC A 1 ? ? 0.083 'SIDE CHAIN' 44 20 DC A 9 ? ? 0.057 'SIDE CHAIN' 45 20 A B 17 ? ? 0.118 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1OKF 'double helix' 1OKF 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B G 9 1_555 0.558 -0.133 0.232 14.493 -15.562 -5.479 1 A_DC1:G18_B A 1 ? B 18 ? 19 1 1 A ATL 2 1_555 B A 8 1_555 0.068 0.141 -0.147 21.798 -23.314 -2.955 2 A_ATL2:A17_B A 2 ? B 17 ? 20 1 1 A DG 3 1_555 B C 7 1_555 -0.433 -0.099 -0.092 -3.199 -20.581 -2.449 3 A_DG3:C16_B A 3 ? B 16 ? 19 1 1 A DA 4 1_555 B U 6 1_555 -0.183 0.019 0.020 9.815 -17.290 -5.359 4 A_DA4:U15_B A 4 ? B 15 ? 20 1 1 A ATL 5 1_555 B A 5 1_555 -0.597 0.117 0.223 14.606 -13.369 -9.379 5 A_ATL5:A14_B A 5 ? B 14 ? 20 1 1 A DA 6 1_555 B U 4 1_555 0.117 0.101 0.196 3.304 -21.916 -1.960 6 A_DA6:U13_B A 6 ? B 13 ? 20 1 1 A ATL 7 1_555 B A 3 1_555 -0.353 0.052 0.287 5.773 -19.842 -8.352 7 A_ATL7:A12_B A 7 ? B 12 ? 20 1 1 A DG 8 1_555 B C 2 1_555 -0.445 -0.053 0.588 -2.258 -11.517 -0.983 8 A_DG8:C11_B A 8 ? B 11 ? 19 1 1 A DC 9 1_555 B G 1 1_555 0.540 -0.053 0.249 14.631 -7.584 -4.150 9 A_DC9:G10_B A 9 ? B 10 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B G 9 1_555 A ATL 2 1_555 B A 8 1_555 -0.470 -1.265 3.112 -2.876 3.161 21.476 -4.478 0.195 2.934 8.376 7.621 21.892 1 AA_DC1ATL2:A17G18_BB A 1 ? B 18 ? A 2 ? B 17 ? 1 A ATL 2 1_555 B A 8 1_555 A DG 3 1_555 B C 7 1_555 -0.786 -1.240 3.429 -7.357 23.707 33.393 -4.212 0.349 2.233 35.769 11.100 41.396 2 AA_ATL2DG3:C16A17_BB A 2 ? B 17 ? A 3 ? B 16 ? 1 A DG 3 1_555 B C 7 1_555 A DA 4 1_555 B U 6 1_555 -0.379 -0.401 2.930 0.901 3.483 34.934 -1.127 0.748 2.867 5.783 -1.497 35.113 3 AA_DG3DA4:U15C16_BB A 3 ? B 16 ? A 4 ? B 15 ? 1 A DA 4 1_555 B U 6 1_555 A ATL 5 1_555 B A 5 1_555 0.252 -1.347 3.162 -4.621 0.663 26.446 -3.064 -1.680 3.041 1.436 10.003 26.847 4 AA_DA4ATL5:A14U15_BB A 4 ? B 15 ? A 5 ? B 14 ? 1 A ATL 5 1_555 B A 5 1_555 A DA 6 1_555 B U 4 1_555 -0.154 -0.851 3.308 -2.799 10.239 41.520 -2.173 -0.065 3.029 14.165 3.873 42.798 5 AA_ATL5DA6:U13A14_BB A 5 ? B 14 ? A 6 ? B 13 ? 1 A DA 6 1_555 B U 4 1_555 A ATL 7 1_555 B A 3 1_555 0.182 -1.530 3.123 -2.413 -0.314 28.999 -2.979 -0.867 3.114 -0.625 4.809 29.099 6 AA_DA6ATL7:A12U13_BB A 6 ? B 13 ? A 7 ? B 12 ? 1 A ATL 7 1_555 B A 3 1_555 A DG 8 1_555 B C 2 1_555 -0.032 -1.452 3.069 -6.541 10.097 37.434 -3.228 -0.642 2.577 15.258 9.884 39.254 7 AA_ATL7DG8:C11A12_BB A 7 ? B 12 ? A 8 ? B 11 ? 1 A DG 8 1_555 B C 2 1_555 A DC 9 1_555 B G 1 1_555 -0.045 -0.944 3.027 1.190 -0.433 33.248 -1.582 0.263 3.035 -0.756 -2.079 33.271 8 AA_DG8DC9:G10C11_BB A 8 ? B 11 ? A 9 ? B 10 ? #