HEADER IMMUNOGLOBULIN 02-AUG-03 1OL0 TITLE CRYSTAL STRUCTURE OF A CAMELISED HUMAN VH COMPND MOL_ID: 1; COMPND 2 MOLECULE: IMMUNOGLOBULIN G; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: VARIABLE HEAVY DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B834 KEYWDS IMMUNOGLOBULIN, CAMELISED VARIABLE HEAVY DOMAIN EXPDTA X-RAY DIFFRACTION AUTHOR T.DOTTORINI,C.K.VAUGHAN,M.A.WALSH,P.LOSURDO,M.SOLLAZZO REVDAT 5 23-OCT-24 1OL0 1 REMARK REVDAT 4 13-DEC-23 1OL0 1 REMARK REVDAT 3 08-MAY-19 1OL0 1 REMARK LINK REVDAT 2 24-FEB-09 1OL0 1 VERSN REVDAT 1 22-JAN-04 1OL0 0 JRNL AUTH T.DOTTORINI,C.K.VAUGHAN,M.A.WALSH,P.LOSURDO,M.SOLLAZZO JRNL TITL CRYSTAL STRUCTURE OF A HUMAN VH: REQUIREMENTS FOR JRNL TITL 2 MAINTAINING A MONOMERIC FRAGMENT JRNL REF BIOCHEMISTRY V. 43 622 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 14730966 JRNL DOI 10.1021/BI035800B REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.DIMARCO,M.RIZZI,C.VOLPARI,M.A.WALSH,F.NARJES,S.COLARUSSO, REMARK 1 AUTH 2 R.DEFRANCESCO,V.G.MATASSA,M.SOLLAZZO REMARK 1 TITL INHIBITION OF THE HEPATITIS C VIRUS NS3/4A PROTEASE. THE REMARK 1 TITL 2 CRYSTAL STRUCTURES OF TWO PROTEASE-INHIBITOR COMPLEXES REMARK 1 REF J.BIOL.CHEM. V. 275 7152 2000 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 10702283 REMARK 1 DOI 10.1074/JBC.275.10.7152 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.MARTIN,C.VOLPARI,C.STEINKUHLER,M.DIMASIBRUNETTI,G.BIASIOL, REMARK 1 AUTH 2 S.ALTAMURA,R.CORTESE,R.DEFRANCESCO,M.SOLLAZZO REMARK 1 TITL AFFINITY SELECTION OF A CAMELIZED V(H) DOMAIN ANTIBODY REMARK 1 TITL 2 INHIBITOR OF HEPATITIS C VIRUS NS3 PROTEASE REMARK 1 REF PROTEIN ENG. V. 10 607 1997 REMARK 1 REFN ISSN 0269-2139 REMARK 1 PMID 9215580 REMARK 1 DOI 10.1093/PROTEIN/10.5.607 REMARK 1 REFERENCE 3 REMARK 1 AUTH L.RIECHMANN REMARK 1 TITL REARRANGEMENT OF THE FORMER VL INTERFACE IN THE SOLUTION REMARK 1 TITL 2 STRUCTURE OF A CAMELISED, SINGLE ANTIBODY VH DOMAIN REMARK 1 REF J.MOL.BIOL. V. 259 957 1996 REMARK 1 REFN ISSN 0022-2836 REMARK 1 PMID 8683598 REMARK 1 DOI 10.1006/JMBI.1996.0373 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.24 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 29892 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT EXCEPT IN LAST RO REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.180 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1506 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1850 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 55 REMARK 3 SOLVENT ATOMS : 388 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.34 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.095 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.044 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.401 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OL0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBE ON 02-AUG-03. REMARK 100 THE DEPOSITION ID IS D_1290013218. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-00 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 7.50 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.933 REMARK 200 MONOCHROMATOR : DIAMON 100/GE 220 REMARK 200 OPTICS : TOROIDAL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29910 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.9 REMARK 200 DATA REDUNDANCY : 2.300 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.83 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.5 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.22700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1HCV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.10 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALS GREW FROM 4 MICROLITRE REMARK 280 HANGING DROPS FORMED BY MIXING 2 MICROLITERS OF PROTEIN AT A REMARK 280 CONCENTRATION OF 5MG/ML WITH 2 MICROLITERS OF RESERVOIR SOLUTION REMARK 280 CONTAINING 15-20% (W/V) PEG 8000, 0.4 M AMMONIUM SULPHATE AND REMARK 280 0.1M HEPES AT PH 7.5., PH 7.50, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.85333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 33.92667 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 33.92667 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 67.85333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2062 O HOH B 2152 2.08 REMARK 500 O HOH B 2096 O HOH B 2101 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS A 43 O GLY B 9 3665 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 103 42.35 -109.14 REMARK 500 PRO B 103 42.33 -107.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A2010 DISTANCE = 6.27 ANGSTROMS REMARK 525 HOH A2011 DISTANCE = 6.34 ANGSTROMS REMARK 525 HOH B2016 DISTANCE = 6.21 ANGSTROMS REMARK 525 HOH B2030 DISTANCE = 7.58 ANGSTROMS REMARK 700 REMARK 700 SHEET REMARK 700 THE SHEET STRUCTURE OF THIS MOLECULE IS BIFURCATED. IN REMARK 700 ORDER TO REPRESENT THIS FEATURE IN THE SHEET RECORDS BELOW, REMARK 700 TWO SHEETS ARE DEFINED. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A1122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1122 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1123 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1124 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1125 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A1126 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B1126 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A8J RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH REMARK 900 ASPARTAME REMARK 900 RELATED ID: 1AJ7 RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN 48G7 GERMLINE FAB ANTIBODY COMPLEXED WITH HAPTEN 5- REMARK 900 (PARA-NITROPHENYL PHOSPHONATE)-PENTANOIC ACID. AFFINITY MATURATION REMARK 900 OF AN ESTEROLYTIC ANTIBODY REMARK 900 RELATED ID: 1AR2 RELATED DB: PDB REMARK 900 DISULFIDE-FREE IMMUNOGLOBULIN FRAGMENT REMARK 900 RELATED ID: 1B6D RELATED DB: PDB REMARK 900 BENCE JONES PROTEIN DEL: AN ENTIRE IMMUNOGLOBULIN KAPPALIGHT-CHAIN REMARK 900 DIMER REMARK 900 RELATED ID: 1BM3 RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN OPG2 FAB-PEPTIDE COMPLEX REMARK 900 RELATED ID: 1BRE RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LIGHT CHAIN PROTEIN 1BRE 3 REMARK 900 RELATED ID: 1BWW RELATED DB: PDB REMARK 900 BENCE-JONES IMMUNOGLOBULIN REI VARIABLE PORTION, T39K MUTANT REMARK 900 RELATED ID: 1CMO RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN MOTIF DEOXYRIBONUCLEIC ACID- RECOGNITION AND REMARK 900 HETERODIMERIZATION FOR THE PEBP2/CBF RUNT-DOMAIN REMARK 900 RELATED ID: 1EK3 RELATED DB: PDB REMARK 900 KAPPA-4 IMMUNOGLOBULIN VL, REC REMARK 900 RELATED ID: 1EPF RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE TWO N-TERMINAL IMMUNOGLOBULIN DOMAINS OF REMARK 900 THE NEURAL CELL ADHESION MOLECULE (NCAM) REMARK 900 RELATED ID: 1FIG RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN G1 (KAPPA LIGHT CHAIN) FAB' FRAGMENT REMARK 900 RELATED ID: 1IE5 RELATED DB: PDB REMARK 900 NMR STRUCTURE OF THE THIRD IMMUNOGLOBULIN DOMAIN FROM THENEURAL REMARK 900 CELL ADHESION MOLECULE. REMARK 900 RELATED ID: 1IGM RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN M (IG-M) FV FRAGMENT REMARK 900 RELATED ID: 1IKF RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN IGG1-KAPPA ANTIBODY FRAGMENT FAB COMPLEXED WITH REMARK 900 CYCLOSPORIN REMARK 900 RELATED ID: 1IND RELATED DB: PDB REMARK 900 CHA255 IMMUNOGLOBULIN FAB' FRAGMENT (IGG1- LAMBDA) COMPLEX WITH 4- REMARK 900 [N'-(2-HYDROXYETHYL )-THIOUREIDO]-L-BENZYL- EDTA-IN(3+) (INDIUM (3+) REMARK 900 -EOTUBE) REMARK 900 RELATED ID: 1INE RELATED DB: PDB REMARK 900 CHA255 IMMUNOGLOBULIN FAB' FRAGMENT (IGG1- LAMBDA) COMPLEX WITH 4- REMARK 900 [N'-(2-HYDROXYETHYL )-THIOUREIDO]-L-BENZYL- EDTA-FE(3+) (IRON( 3+)- REMARK 900 EOTUBE) REMARK 900 RELATED ID: 1IVL RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN VL DOMAIN (VARIABLE DOMAIN OF KAPPA LIGHT CHAIN) OF REMARK 900 DESIGNED ANTIBODY M29B REMARK 900 RELATED ID: 1JGL RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF IMMUNOGLOBULIN FAB FRAGMENT COMPLEXEDWITH 17- REMARK 900 BETA-ESTRADIOL REMARK 900 RELATED ID: 1JVK RELATED DB: PDB REMARK 900 THREE-DIMENSIONAL STRUCTURE OF AN IMMUNOGLOBULIN LIGHTCHAIN DIMER REMARK 900 ACTING AS A LETHAL AMYLOID PRECURSOR REMARK 900 RELATED ID: 1KOA RELATED DB: PDB REMARK 900 TWITCHIN KINASE FRAGMENT (C.ELEGANS), AUTOREGULATEDPROTEIN KINASE REMARK 900 AND IMMUNOGLOBULIN DOMAINS REMARK 900 RELATED ID: 1KSR RELATED DB: PDB REMARK 900 THE REPEATING SEGMENTS OF THE F-ACTIN CROSS-LINKING GELATION FACTOR REMARK 900 (ABP-120) HAVE AN IMMUNOGLOBULIN FOLD, NMR, 20 STRUCTURES REMARK 900 RELATED ID: 1LVE RELATED DB: PDB REMARK 900 STRUCTURE OF THE VARIABLE DOMAIN OF HUMAN IMMUNOGLOBULIN K-4 LIGHT REMARK 900 CHAIN LEN REMARK 900 RELATED ID: 1MCB RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-L-GLN-D-PHE-L- HIS-D-PRO-OH REMARK 900 RELATED ID: 1MCC RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-L-GLN-D-PHE-L- HIS-D-PRO-NH2 REMARK 900 RELATED ID: 1MCD RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-D-PHE-B-ALA-L- HIS-D-PRO-NH2 REMARK 900 RELATED ID: 1MCE RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-L-GLN-D-PHE-L- HIS-D-PRO-B-ALA-OH REMARK 900 RELATED ID: 1MCF RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-L-GLN-D-PHE-L- HIS-D-PRO-B-ALA-B-ALA-OH REMARK 900 RELATED ID: 1MCH RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-L-GLN-D-PHE-L- HIS-D-PRO-B-ALA-B-ALA-OH REMARK 900 RELATED ID: 1MCI RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-D-PHE-L-HIS-D- PRO-OH REMARK 900 RELATED ID: 1MCJ RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-D-PHE-L-HIS-D- PRO-NH2 REMARK 900 RELATED ID: 1MCK RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEXED WITH N- REMARK 900 ACETYL-D-GLU-L-HIS-D -PRO-NH2 REMARK 900 RELATED ID: 1MCL RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-D-HIS-L-PRO-OH REMARK 900 RELATED ID: 1MCN RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-D-HIS-L-PRO-NH2 REMARK 900 RELATED ID: 1MCO RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN G1 (IGG1) (MCG) WITH A HINGE DELETION REMARK 900 RELATED ID: 1MCP RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN FAB FRAGMENT (MCPC603) REMARK 900 RELATED ID: 1MCQ RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-L-HIS-D-PRO-NH2 REMARK 900 RELATED ID: 1MCR RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-L-HIS-D-PRO-OH REMARK 900 RELATED ID: 1MCS RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) COMPLEX WITH N- REMARK 900 ACETYL-L-GLN-D-PHE-L- HIS-D-PRO-OH REMARK 900 RELATED ID: 1MCW RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN HETEROLOGOUS LIGHT CHAIN DIMER ( MCG-WEIR HYBRID) REMARK 900 RELATED ID: 1REI RELATED DB: PDB REMARK 900 BENCE-JONES IMMUNOGLOBULIN REI VARIABLE PORTION REMARK 900 RELATED ID: 1VKX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE NFKB P50/P65 HETERODIMER COMPLEXED TO THE REMARK 900 IMMUNOGLOBULIN KB DEOXYRIBONUCLEIC ACID REMARK 900 RELATED ID: 1WIT RELATED DB: PDB REMARK 900 TWITCHIN IMMUNOGLOBULIN SUPERFAMILY DOMAIN (IGSF MODULE) (IG 18'), REMARK 900 NMR, MINIMIZED AVERAGE STRUCTURE REMARK 900 RELATED ID: 1WIU RELATED DB: PDB REMARK 900 TWITCHIN IMMUNOGLOBULIN SUPERFAMILY DOMAIN (IGSF MODULE) (IG 18'), REMARK 900 NMR, 30 STRUCTURES REMARK 900 RELATED ID: 2DL2 RELATED DB: PDB REMARK 900 KILLER IMMUNOGLOBULIN RECEPTOR 2DL2 REMARK 900 RELATED ID: 2DLI RELATED DB: PDB REMARK 900 KILLER IMMUNOGLOBULIN RECEPTOR 2DL2,TRIGONAL FORM REMARK 900 RELATED ID: 2FB4 RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN FAB REMARK 900 RELATED ID: 2IG2 RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN G1 REMARK 900 RELATED ID: 2IMM RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN VL DOMAIN (VARIABLE DOMAIN OF KAPPA LIGHT CHAIN) OF REMARK 900 MCPC603 REMARK 900 RELATED ID: 2IMN RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN VL DOMAIN (VARIABLE DOMAIN OF KAPPA LIGHT CHAIN) OF REMARK 900 MCPC603 MUTANT IN WHICH COMPLEMENTARITY-DETERMINING REGION I HAS REMARK 900 BEEN REPLACED BY THAT FROM MOPC167 REMARK 900 RELATED ID: 2LOI RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER LOI FROM A HUMAN PATIENT REMARK 900 RELATED ID: 2MCG RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) (TRIGONAL FORM) REMARK 900 RELATED ID: 2MCP RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN MCPC603 FAB-PHOSPHOCHOLINE COMPLEX REMARK 900 RELATED ID: 2RCS RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN 48G7 GERMLINE FAB - AFFINITY MATURATION OF AN REMARK 900 ESTEROLYTIC ANTIBODY REMARK 900 RELATED ID: 3MCG RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN LAMBDA LIGHT CHAIN DIMER (MCG ) (ORTHORHOMBIC FORM) REMARK 900 RELATED ID: 5LVE RELATED DB: PDB REMARK 900 STRUCTURE OF THE VARIABLE DOMAIN OF HUMAN IMMUNOGLOBULIN K- 4 LIGHT REMARK 900 CHAIN LEN REMARK 900 RELATED ID: 7FAB RELATED DB: PDB REMARK 900 IMMUNOGLOBULIN FAB' NEW (LAMBDA LIGHT CHAIN) REMARK 900 RELATED ID: 8FAB RELATED DB: PDB REMARK 900 FAB FRAGMENT FROM HUMAN IMMUNOGLOBULIN IGG1 ( LAMBDA, HIL) DBREF 1OL0 A 1 121 PDB 1OL0 1OL0 1 121 DBREF 1OL0 B 1 121 PDB 1OL0 1OL0 1 121 SEQRES 1 A 121 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 121 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 121 PHE THR PHE SER SER TYR ALA MSE SER TRP PHE ARG GLN SEQRES 4 A 121 ALA PRO GLY LYS GLU ARG GLU ILE VAL SER ALA VAL SER SEQRES 5 A 121 GLY SER GLY GLY SER THR TYR TYR ALA ASP SER VAL ARG SEQRES 6 A 121 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 A 121 LEU TYR LEU GLN MSE ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 121 ALA VAL TYR TYR CYS ALA ARG GLU PRO ARG ILE PRO ARG SEQRES 9 A 121 PRO PRO SER PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 A 121 THR VAL SER SER SEQRES 1 B 121 GLN VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 B 121 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 B 121 PHE THR PHE SER SER TYR ALA MSE SER TRP PHE ARG GLN SEQRES 4 B 121 ALA PRO GLY LYS GLU ARG GLU ILE VAL SER ALA VAL SER SEQRES 5 B 121 GLY SER GLY GLY SER THR TYR TYR ALA ASP SER VAL ARG SEQRES 6 B 121 GLY ARG PHE THR ILE SER ARG ASP ASN SER LYS ASN THR SEQRES 7 B 121 LEU TYR LEU GLN MSE ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 B 121 ALA VAL TYR TYR CYS ALA ARG GLU PRO ARG ILE PRO ARG SEQRES 9 B 121 PRO PRO SER PHE ASP TYR TRP GLY GLN GLY THR LEU VAL SEQRES 10 B 121 THR VAL SER SER MODRES 1OL0 MSE A 34 MET SELENOMETHIONINE MODRES 1OL0 MSE A 83 MET SELENOMETHIONINE MODRES 1OL0 MSE B 34 MET SELENOMETHIONINE MODRES 1OL0 MSE B 83 MET SELENOMETHIONINE HET MSE A 34 8 HET MSE A 83 8 HET MSE B 34 8 HET MSE B 83 8 HET SO4 A1122 5 HET GOL A1123 6 HET GOL A1124 6 HET GOL A1125 6 HET GOL A1126 6 HET SO4 B1122 5 HET SO4 B1123 5 HET SO4 B1124 5 HET SO4 B1125 5 HET GOL B1126 6 HETNAM MSE SELENOMETHIONINE HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 SO4 5(O4 S 2-) FORMUL 4 GOL 5(C3 H8 O3) FORMUL 13 HOH *388(H2 O) HELIX 1 1 THR A 28 TYR A 32 5 5 HELIX 2 2 ASP A 62 ARG A 65 5 4 HELIX 3 3 ARG A 87 THR A 91 5 5 HELIX 4 4 PRO A 105 ASP A 109 5 5 HELIX 5 5 THR B 28 TYR B 32 5 5 HELIX 6 6 ASP B 62 ARG B 65 5 4 HELIX 7 7 ARG B 87 THR B 91 5 5 HELIX 8 8 PRO B 105 ASP B 109 5 5 SHEET 1 AA 4 GLN A 3 GLY A 8 0 SHEET 2 AA 4 LEU A 18 SER A 25 -1 O SER A 21 N SER A 7 SHEET 3 AA 4 THR A 78 MSE A 83 -1 O LEU A 79 N CYS A 22 SHEET 4 AA 4 PHE A 68 ASP A 73 -1 O THR A 69 N GLN A 82 SHEET 1 AB 6 GLY A 10 VAL A 12 0 SHEET 2 AB 6 THR A 115 VAL A 119 1 O LEU A 116 N GLY A 10 SHEET 3 AB 6 ALA A 92 ARG A 98 -1 O ALA A 92 N VAL A 117 SHEET 4 AB 6 MSE A 34 GLN A 39 -1 O SER A 35 N ALA A 97 SHEET 5 AB 6 GLU A 46 VAL A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 AB 6 THR A 58 TYR A 60 -1 O TYR A 59 N ALA A 50 SHEET 1 AC 4 GLY A 10 VAL A 12 0 SHEET 2 AC 4 THR A 115 VAL A 119 1 O LEU A 116 N GLY A 10 SHEET 3 AC 4 ALA A 92 ARG A 98 -1 O ALA A 92 N VAL A 117 SHEET 4 AC 4 TYR A 110 TRP A 111 -1 O TYR A 110 N ARG A 98 SHEET 1 BA 4 GLN B 3 GLY B 8 0 SHEET 2 BA 4 LEU B 18 SER B 25 -1 O SER B 21 N SER B 7 SHEET 3 BA 4 THR B 78 MSE B 83 -1 O LEU B 79 N CYS B 22 SHEET 4 BA 4 PHE B 68 ASP B 73 -1 O THR B 69 N GLN B 82 SHEET 1 BB 6 GLY B 10 VAL B 12 0 SHEET 2 BB 6 THR B 115 VAL B 119 1 O LEU B 116 N GLY B 10 SHEET 3 BB 6 ALA B 92 ARG B 98 -1 O ALA B 92 N VAL B 117 SHEET 4 BB 6 MSE B 34 GLN B 39 -1 O SER B 35 N ALA B 97 SHEET 5 BB 6 GLU B 46 VAL B 51 -1 O GLU B 46 N ARG B 38 SHEET 6 BB 6 THR B 58 TYR B 60 -1 O TYR B 59 N ALA B 50 SHEET 1 BC 4 GLY B 10 VAL B 12 0 SHEET 2 BC 4 THR B 115 VAL B 119 1 O LEU B 116 N GLY B 10 SHEET 3 BC 4 ALA B 92 ARG B 98 -1 O ALA B 92 N VAL B 117 SHEET 4 BC 4 TYR B 110 TRP B 111 -1 O TYR B 110 N ARG B 98 SSBOND 1 CYS A 22 CYS A 96 1555 1555 2.10 SSBOND 2 CYS B 22 CYS B 96 1555 1555 2.16 LINK C ALA A 33 N MSE A 34 1555 1555 1.33 LINK C MSE A 34 N SER A 35 1555 1555 1.32 LINK C GLN A 82 N MSE A 83 1555 1555 1.33 LINK C MSE A 83 N ASN A 84 1555 1555 1.33 LINK C ALA B 33 N MSE B 34 1555 1555 1.33 LINK C MSE B 34 N SER B 35 1555 1555 1.33 LINK C GLN B 82 N MSE B 83 1555 1555 1.32 LINK C MSE B 83 N ASN B 84 1555 1555 1.32 CISPEP 1 ILE A 102 PRO A 103 0 -1.63 CISPEP 2 ILE B 102 PRO B 103 0 -1.83 SITE 1 AC1 6 PHE A 27 THR A 28 TYR A 32 ARG A 101 SITE 2 AC1 6 HOH A2049 HOH A2194 SITE 1 AC2 10 GLY A 8 GLU B 44 ARG B 45 HOH B2078 SITE 2 AC2 10 HOH B2122 HOH B2183 HOH B2184 HOH B2185 SITE 3 AC2 10 HOH B2186 HOH B2187 SITE 1 AC3 4 ARG A 65 HOH A2102 ARG B 104 HOH B2188 SITE 1 AC4 5 PHE B 27 THR B 28 TYR B 32 ARG B 101 SITE 2 AC4 5 HOH B2055 SITE 1 AC5 4 ARG A 104 ARG B 65 HOH B2091 HOH B2190 SITE 1 AC6 7 THR A 58 TYR A 60 HOH A2127 HOH A2195 SITE 2 AC6 7 THR B 58 TYR B 60 HOH B2108 SITE 1 AC7 6 GLN A 13 SER A 120 SER A 121 HOH A2018 SITE 2 AC7 6 HOH A2196 PRO B 41 SITE 1 AC8 5 ARG A 19 HOH A2036 HOH A2144 ARG B 19 SITE 2 AC8 5 HOH B2121 SITE 1 AC9 5 PHE A 27 THR A 28 PHE A 29 ASN A 77 SITE 2 AC9 5 HOH A2051 SITE 1 BC1 5 GLU B 46 ASP B 62 SER B 63 HOH B2191 SITE 2 BC1 5 HOH B2192 CRYST1 75.300 75.300 101.780 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013280 0.007667 0.000000 0.00000 SCALE2 0.000000 0.015335 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009825 0.00000 MTRIX1 1 -0.999943 -0.009568 -0.004770 95.64020 1 MTRIX2 1 0.001752 -0.586769 0.809753 37.70880 1 MTRIX3 1 -0.010547 0.809698 0.586752 -18.93450 1