HEADER BINDING PROTEIN 26-APR-94 1OLA TITLE THE STRUCTURAL BASIS OF MULTISPECIFICITY IN THE TITLE 2 OLIGOPEPTIDE-BINDING PROTEIN OPPA COMPND MOL_ID: 1; COMPND 2 MOLECULE: OLIGO-PEPTIDE BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: PEPTIDE VAL-LYS-PRO-GLY; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 MOL_ID: 2 KEYWDS BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.TAME,A.J.WILKINSON REVDAT 3 24-FEB-09 1OLA 1 VERSN REVDAT 2 01-APR-03 1OLA 1 JRNL REVDAT 1 31-JUL-94 1OLA 0 JRNL AUTH J.R.TAME,G.N.MURSHUDOV,E.J.DODSON,T.K.NEIL, JRNL AUTH 2 G.G.DODSON,C.F.HIGGINS,A.J.WILKINSON JRNL TITL THE STRUCTURAL BASIS OF SEQUENCE-INDEPENDENT JRNL TITL 2 PEPTIDE BINDING BY OPPA PROTEIN. JRNL REF SCIENCE V. 264 1578 1994 JRNL REFN ISSN 0036-8075 JRNL PMID 8202710 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH I.D.GLOVER,R.DENNY,N.D.NGUTI,S.MCSWEENEY, REMARK 1 AUTH 2 A.THOMPSON,E.DODSON,A.J.WILKINSON,J.TAME REMARK 1 TITL STRUCTURE DETERMINATION OF OPPA AT 2.3 ANGSTROMS REMARK 1 TITL 2 RESOLUTION USING MULTIPLE WAVELENGTH ANOMALOUS REMARK 1 TITL 3 METHODS REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29634 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4107 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 354 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.015 ; 0.015 REMARK 3 ANGLE DISTANCE (A) : 0.037 ; 0.025 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.051 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.014 ; 0.020 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.203 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.181 ; 0.300 REMARK 3 MULTIPLE TORSION (A) : 0.272 ; 0.300 REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : 0.196 ; 0.300 REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 2.768 ; 7.000 REMARK 3 STAGGERED (DEGREES) : 21.182; 20.000 REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 5.275 ; 4.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.575 ; 6.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 11.070; 8.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 13.561; 10.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: CRYSTALS OF OPPA ARE ONLY OBTAINED REMARK 3 IN THE PRESENCE OF URANYL IONS WHICH BIND TO THE PROTEIN AND REMARK 3 ARE RESPONSIBLE FOR FORMING IMPORTANT CRYSTAL CONTACTS. TWO REMARK 3 CRYSTAL FORMS OF URANYL OPPA HAVE BEEN FOUND. OPPA CONTAINING REMARK 3 CO-PURIFIED PEPTIDES CO-CRYSTALLIZED WITH URANYL ACETATE GIVES REMARK 3 CRYSTALS IN SPACE-GROUP P 21 21 2 CONTAINING TWO URANIUM REMARK 3 ATOMS. ONE URANIUM ATOM FORMS AN IMPORTANT CRYSTAL CONTACT. REMARK 3 THE OTHER LIES VERY CLOSE TO THE TWO-FOLD AXIS AND HAS A HIGH REMARK 3 TEMPERATURE FACTOR. NO ATTEMPT WAS MADE IN REFINEMENT TO REMARK 3 CONSTRAIN THIS ATOM TO THE SYMMETRY AXIS. IT HAS BEEN ASSIGNED REMARK 3 AN OCCUPANCY OF 0.5 TO ALLOW FOR SYMMETRY. OPPA LIGANDED WITH REMARK 3 TRI-LYSINE CRYSTALLIZES WITH EIGHT URANYL IONS PER PROTEIN REMARK 3 MOLECULE IN SPACE-GROUP P 21 21 21. THIS STRUCTURE IS REMARK 3 PRESENTED IN PDB ENTRY 1OLB. REMARK 4 REMARK 4 1OLA COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.46 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 53.25000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.25000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THERE ARE NO DISCONTINUITIES. THE PEPTIDE LIGAND IS A REMARK 400 SEPARATE CHAIN. REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS(M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 8 CB CG CD OE1 NE2 REMARK 470 LYS A 169 CB CG CD CE NZ REMARK 470 LYS A 178 CG CD CE NZ REMARK 470 GLN A 181 CB CG CD OE1 NE2 REMARK 470 LYS A 192 CB CG CD CE NZ REMARK 470 ARG A 237 CB CG CD NE CZ NH1 NH2 REMARK 470 GLN A 254 CB CG CD OE1 NE2 REMARK 470 LYS A 255 CB CG CD CE NZ REMARK 470 ILE A 260 CB CG1 CG2 CD1 REMARK 470 LYS A 345 CB CG CD CE NZ REMARK 470 LYS A 373 CB CG CD CE NZ REMARK 470 LYS A 383 CB CG CD CE NZ REMARK 470 LYS A 384 CB CG CD CE NZ REMARK 470 GLN A 461 CB CG CD OE1 NE2 REMARK 470 LYS A 468 CG CD CE NZ REMARK 470 LYS A 475 CE NZ REMARK 470 LYS A 501 CB CG CD CE NZ REMARK 470 LYS A 516 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CA LYS A 383 O HOH A 858 1.86 REMARK 500 CD2 LEU A 427 O HOH A 764 2.03 REMARK 500 O LEU A 392 O HOH A 722 2.06 REMARK 500 O PRO A 208 O HOH A 833 2.10 REMARK 500 CA LYS A 192 O HOH A 778 2.10 REMARK 500 OD2 ASP A 267 O HOH A 572 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 665 O HOH A 665 2555 1.50 REMARK 500 O HOH A 857 O HOH A 857 2545 1.91 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 11 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 17 CD - NE - CZ ANGL. DEV. = 17.8 DEGREES REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 SER A 21 N - CA - CB ANGL. DEV. = 9.4 DEGREES REMARK 500 LEU A 48 CA - CB - CG ANGL. DEV. = 21.7 DEGREES REMARK 500 SER A 50 N - CA - CB ANGL. DEV. = 10.3 DEGREES REMARK 500 ASP A 68 CB - CG - OD2 ANGL. DEV. = -7.4 DEGREES REMARK 500 ARG A 77 CD - NE - CZ ANGL. DEV. = 13.8 DEGREES REMARK 500 ARG A 99 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 TYR A 109 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 MET A 243 N - CA - CB ANGL. DEV. = 14.0 DEGREES REMARK 500 ARG A 265 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 265 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ASP A 267 CB - CG - OD1 ANGL. DEV. = -7.1 DEGREES REMARK 500 ASP A 267 CB - CG - OD2 ANGL. DEV. = 9.1 DEGREES REMARK 500 TYR A 269 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 TYR A 275 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 288 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 288 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 290 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ASP A 300 CB - CG - OD2 ANGL. DEV. = -7.6 DEGREES REMARK 500 ASP A 323 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 GLU A 329 OE1 - CD - OE2 ANGL. DEV. = 8.0 DEGREES REMARK 500 ARG A 413 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 447 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 462 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 462 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 LEU A 473 CA - CB - CG ANGL. DEV. = 14.8 DEGREES REMARK 500 ASP A 474 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 32 -7.32 -154.18 REMARK 500 GLU A 200 -60.15 -132.72 REMARK 500 ASN A 246 49.51 -95.07 REMARK 500 LYS A 307 -74.40 -73.89 REMARK 500 ASN A 308 41.60 71.57 REMARK 500 SER A 368 144.02 179.79 REMARK 500 THR A 408 51.78 -98.93 REMARK 500 ASP A 410 -73.92 -101.91 REMARK 500 VAL A 482 -65.69 -107.45 REMARK 500 LYS A 510 -9.86 -59.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 688 DISTANCE = 7.90 ANGSTROMS REMARK 525 HOH A 702 DISTANCE = 7.94 ANGSTROMS REMARK 525 HOH A 718 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH A 730 DISTANCE = 6.56 ANGSTROMS REMARK 525 HOH A 761 DISTANCE = 5.75 ANGSTROMS REMARK 525 HOH A 767 DISTANCE = 6.81 ANGSTROMS REMARK 525 HOH A 791 DISTANCE = 6.60 ANGSTROMS REMARK 525 HOH A 828 DISTANCE = 9.31 ANGSTROMS REMARK 525 HOH A 870 DISTANCE = 5.08 ANGSTROMS REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE PROTEIN WAS CO-CRYSTALLIZED WITH URANYL (VI) ACETATE. REMARK 600 TWO URANIUM ATOMS ARE INCLUDED IN THE MODEL BUT THE REMARK 600 ASSOCIATED OXYGEN ATOMS ARE NOT VISIBLE. THE SECOND REMARK 600 URANIUM ATOM LIES ON A TWO-FOLD AXIS. REMARK 600 REMARK 600 THE PEPTIDE LIGAND WAS CO-PURIFIED WITH THE PROTEIN REMARK 600 AND IS A RANDOM MIXTURE. THIS HAS BEEN MODELED AS REMARK 600 VAL-LYS-PRO-GLY BUT THE SIDE-CHAIN DENSITY IS POOR. REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 IUM A 518 REMARK 610 IUM A 519 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 518 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IUM A 519 DBREF 1OLA A 1 517 UNP P06202 OPPA_SALTY 26 542 DBREF 1OLA B 1 4 PDB 1OLA 1OLA 1 4 SEQRES 1 A 517 ALA ASP VAL PRO ALA GLY VAL GLN LEU ALA ASP LYS GLN SEQRES 2 A 517 THR LEU VAL ARG ASN ASN GLY SER GLU VAL GLN SER LEU SEQRES 3 A 517 ASP PRO HIS LYS ILE GLU GLY VAL PRO GLU SER ASN VAL SEQRES 4 A 517 SER ARG ASP LEU PHE GLU GLY LEU LEU ILE SER ASP VAL SEQRES 5 A 517 GLU GLY HIS PRO SER PRO GLY VAL ALA GLU LYS TRP GLU SEQRES 6 A 517 ASN LYS ASP PHE LYS VAL TRP THR PHE HIS LEU ARG GLU SEQRES 7 A 517 ASN ALA LYS TRP SER ASP GLY THR PRO VAL THR ALA HIS SEQRES 8 A 517 ASP PHE VAL TYR SER TRP GLN ARG LEU ALA ASP PRO ASN SEQRES 9 A 517 THR ALA SER PRO TYR ALA SER TYR LEU GLN TYR GLY HIS SEQRES 10 A 517 ILE ALA ASN ILE ASP ASP ILE ILE ALA GLY LYS LYS PRO SEQRES 11 A 517 ALA THR ASP LEU GLY VAL LYS ALA LEU ASP ASP HIS THR SEQRES 12 A 517 PHE GLU VAL THR LEU SER GLU PRO VAL PRO TYR PHE TYR SEQRES 13 A 517 LYS LEU LEU VAL HIS PRO SER VAL SER PRO VAL PRO LYS SEQRES 14 A 517 SER ALA VAL GLU LYS PHE GLY ASP LYS TRP THR GLN PRO SEQRES 15 A 517 ALA ASN ILE VAL THR ASN GLY ALA TYR LYS LEU LYS ASN SEQRES 16 A 517 TRP VAL VAL ASN GLU ARG ILE VAL LEU GLU ARG ASN PRO SEQRES 17 A 517 GLN TYR TRP ASP ASN ALA LYS THR VAL ILE ASN GLN VAL SEQRES 18 A 517 THR TYR LEU PRO ILE SER SER GLU VAL THR ASP VAL ASN SEQRES 19 A 517 ARG TYR ARG SER GLY GLU ILE ASP MET THR TYR ASN ASN SEQRES 20 A 517 MET PRO ILE GLU LEU PHE GLN LYS LEU LYS LYS GLU ILE SEQRES 21 A 517 PRO ASN GLU VAL ARG VAL ASP PRO TYR LEU CYS THR TYR SEQRES 22 A 517 TYR TYR GLU ILE ASN ASN GLN LYS ALA PRO PHE ASN ASP SEQRES 23 A 517 VAL ARG VAL ARG THR ALA LEU LYS LEU ALA LEU ASP ARG SEQRES 24 A 517 ASP ILE ILE VAL ASN LYS VAL LYS ASN GLN GLY ASP LEU SEQRES 25 A 517 PRO ALA TYR SER TYR THR PRO PRO TYR THR ASP GLY ALA SEQRES 26 A 517 LYS LEU VAL GLU PRO GLU TRP PHE LYS TRP SER GLN GLN SEQRES 27 A 517 LYS ARG ASN GLU GLU ALA LYS LYS LEU LEU ALA GLU ALA SEQRES 28 A 517 GLY PHE THR ALA ASP LYS PRO LEU THR PHE ASP LEU LEU SEQRES 29 A 517 TYR ASN THR SER ASP LEU HIS LYS LYS LEU ALA ILE ALA SEQRES 30 A 517 VAL ALA SER ILE TRP LYS LYS ASN LEU GLY VAL ASN VAL SEQRES 31 A 517 ASN LEU GLU ASN GLN GLU TRP LYS THR PHE LEU ASP THR SEQRES 32 A 517 ARG HIS GLN GLY THR PHE ASP VAL ALA ARG ALA GLY TRP SEQRES 33 A 517 CYS ALA ASP TYR ASN GLU PRO THR SER PHE LEU ASN THR SEQRES 34 A 517 MET LEU SER ASP SER SER ASN ASN THR ALA HIS TYR LYS SEQRES 35 A 517 SER PRO ALA PHE ASP LYS LEU ILE ALA ASP THR LEU LYS SEQRES 36 A 517 VAL ALA ASP ASP THR GLN ARG SER GLU LEU TYR ALA LYS SEQRES 37 A 517 ALA GLU GLN GLN LEU ASP LYS ASP SER ALA ILE VAL PRO SEQRES 38 A 517 VAL TYR TYR TYR VAL ASN ALA ARG LEU VAL LYS PRO TRP SEQRES 39 A 517 VAL GLY GLY TYR THR GLY LYS ASP PRO LEU ASP ASN ILE SEQRES 40 A 517 TYR VAL LYS ASN LEU TYR ILE ILE LYS HIS SEQRES 1 B 4 VAL LYS PRO GLY HET IUM A 518 1 HET IUM A 519 1 HETNAM IUM URANYL (VI) ION FORMUL 3 IUM 2(O2 U 2+) FORMUL 5 HOH *354(H2 O) HELIX 1 H01 VAL A 34 LEU A 43 1 10 HELIX 2 H02 ALA A 90 ALA A 101 1 12 HELIX 3 H03 TYR A 112 GLY A 116 1 5 HELIX 4 H04 ILE A 121 ALA A 126 1 6 HELIX 5 H05 LYS A 169 LYS A 174 1 6 HELIX 6 H06 GLU A 229 SER A 238 1 10 HELIX 7 H07 PHE A 253 GLU A 259 1 7 HELIX 8 H08 VAL A 287 ALA A 296 1 10 HELIX 9 H09 ARG A 299 VAL A 303 1 5 HELIX 10 H10 GLN A 337 ALA A 351 1 15 HELIX 11 H11 ASP A 369 LYS A 384 1 16 HELIX 12 H12 TRP A 397 GLN A 406 1 10 HELIX 13 H13 THR A 424 MET A 430 1 7 HELIX 14 H14 PRO A 444 LYS A 455 1 12 HELIX 15 H15 ASP A 459 ASP A 476 1 18 SHEET 1 S1 7 LYS A 192 VAL A 197 0 SHEET 2 S1 7 ARG A 201 ARG A 206 -1 SHEET 3 S1 7 ASN A 219 LEU A 224 -1 SHEET 4 S1 7 GLN A 13 ASN A 19 1 SHEET 5 S1 7 MET A 243 THR A 244 1 SHEET 6 S1 7 ASN A 487 LYS A 492 -1 SHEET 7 S1 7 GLU A 263 ASP A 267 1 SHEET 1 S2 4 LYS A 63 LYS A 67 0 SHEET 2 S2 4 VAL A 71 LEU A 76 -1 SHEET 3 S2 4 HIS A 142 LEU A 148 -1 SHEET 4 S2 4 GLY A 135 SER A 149 -1 SHEET 1 S3 5 ASN A 389 GLN A 395 0 SHEET 2 S3 5 LEU A 359 THR A 367 1 SHEET 3 S3 5 VAL A 411 ALA A 418 1 SHEET 4 S3 5 LEU A 270 GLU A 276 -1 SHEET 5 S3 5 VAL A 480 TYR A 485 -1 SSBOND 1 CYS A 271 CYS A 417 1555 1555 1.97 CISPEP 1 ALA A 282 PRO A 283 0 -1.12 SITE 1 AC1 4 GLU A 150 ASP A 362 ASP A 410 HOH A 696 SITE 1 AC2 1 GLU A 329 CRYST1 106.500 74.500 70.000 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009390 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014286 0.00000