data_1OLN # _entry.id 1OLN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.313 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1OLN PDBE EBI-13289 WWPDB D_1290013289 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.content_type _pdbx_database_related.details PDB 1D8T unspecified 'CRYSTAL STRUCTURE OF THE ELONGATION FACTOR EF-TU-MGGDP COMPLEXED WITH THE THIOPEPTIDE GE2270A.' PDB 1E9W unspecified 'CRYSTAL STRUCTURE OF THIOPEPTIDE THIOSTREPTON' PDB 2C77 unspecified 'CRYSTAL STRUCTURE OF THE ELONGATION FACTOR EF-TU-GNP COMPLEXED WITH THIOPEPTIDE GE2270A.' PDB 2JQ7 unspecified 'SOLUTION STRUCTURE OF THE COMPLEX OF THIOPEPTIDE THIOSTREPTON AND RIBOSOMAL L11-RNA' PDB 2ZJP unspecified 'CRYSTAL STRUCTURE OF NOSIHEPTIDE COMPLEXED WITH THE LARGE RIBOSOMAL SUBUNIT OF DEINOCOCCUS RADIODURANS' PDB 3CF5 unspecified 'CRYSTAL STRUCTURE OF RIBOSOMAL L11-RNA COMPLEXED WITH THE THIOPEPTIDE THIOSTREPTON' PDB 1MMS unspecified 'CRYSTAL STRUCTURE OF THE RIBOSOMAL PROTEIN L11-RNA COMPLEX' PDB 1EG0 unspecified 'FITTING OF COMPONENTS WITH KNOWN STRUCTURE INTO AN 11.5 A CRYO-EM MAP OF THE E. COLI 70S RIBOSOME' PDB 1GIY unspecified 'CRYSTAL STRUCTURE OF THE RIBOSOME AT 5.5A RESOLUTIO' PDB 1JQM unspecified ;FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (EF-G) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUND WITH EF-G,GDP AND FUSIDIC ACID ; PDB 1JQS unspecified ;FITTING OF L11 PROTEIN AND ELONGATION FACTOR G (DOMAIN G'AND V) IN THE CRYO-EM MAP OF E. COLI 70S RIBOSOME BOUNDWITH EF-G AND GMPPCP ; PDB 1JQT unspecified 'FITTING OF L11 PROTEIN IN THE LOW RESOLUTION CRYO-EM MAP OFE.COLI 70S RIBOSOME' PDB 1PN7 unspecified 'COORDINATES OF S12, L11 PROTEINS AND P-TRNA, FROM THE 70S X-RAY STRUCTURE ALIGNED TO THE 70S CRYO-EM MAP OF E. COLIRIBOSOME' PDB 1PN8 unspecified ;COORDINATES OF S12, L11 PROTEINS AND E-SITE TRNA FROM 70S CRYSTAL STRUCTURE SEPARATELY FITTED INTO THE CRYO-EM MAPOF E.COLI 70S.EF-G.GDPNP COMPLEX. THE COORDINATESORIGINALLY FROM THE E-SITE TRNA WERE FITTED IN THEPOSITION OF THE HYBRID P /E-SITE TRNA. ; PDB 487D unspecified 'SEVEN RIBOSOMAL PROTEINS FITTED TO A CRYO-EM MAP OF THE LARGE 50S SUBUNIT AT 7.5 A.' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OLN _pdbx_database_status.deposit_site PDBE _pdbx_database_status.process_site PDBE _pdbx_database_status.SG_entry . _pdbx_database_status.recvd_initial_deposition_date 2003-08-08 _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lentzen, G.' 1 'Klinck, R.' 2 'Matassova, N.' 3 'Aboul-Ela, F.' 4 'Murchie, A.I.H.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structural Basis for Contrasting Activities of Ribosome Binding Thiazole Antibiotics' Chem.Biol. 10 769 ? 2003 CBOLE2 UK 1074-5521 2050 ? 12954336 '10.1016/S1074-5521(03)00173-X' 1 'A Detailed View of a Ribosomal Active Site: The Structure of the L11-RNA Complex' 'Cell(Cambridge,Mass.)' 97 491 ? 1999 CELLB5 US 0092-8674 0998 ? 10338213 '10.1016/S0092-8674(00)80759-X' 2 'Crystal Structure of a Conserved Ribosomal Protein-RNA Complex' Science 284 1171 ? 1999 SCIEAS US 0036-8075 0038 ? 10325228 10.1126/SCIENCE.284.5417.1171 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Lentzen, G.' 1 ? primary 'Klinck, R.' 2 ? primary 'Matassova, N.' 3 ? primary 'Aboul-Ela, F.' 4 ? primary 'Murchie, A.I.H.' 5 ? 1 'Wimberly, B.T.' 6 ? 1 'Guymon, R.' 7 ? 1 'Mccutcheon, J.P.' 8 ? 1 'White, S.W.' 9 ? 1 'Ramakrishnan, V.' 10 ? 2 'Conn, G.L.' 11 ? 2 'Draper, D.E.' 12 ? 2 'Lattman, E.E.' 13 ? 2 'Gittis, A.G.' 14 ? # _cell.entry_id 1OLN _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OLN _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat '50S RIBOSOMAL PROTEIN L11' 14980.726 1 ? ? ? ? 2 polymer nat THIOSTREPTON 1805.985 1 ? ? ? ? 3 polymer nat RNA 18693.145 1 ? ? 'RESIDUES 1051-1108' ? # _entity_name_com.entity_id 2 _entity_name_com.name 'ALANINAMIDE, BRYAMYCIN, THIACTIN' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD ; ;AKKVAAQIKLQLPAGKATPAPPVGPALGQHGVNIMEFCKRFNAETADKAGMILPVVITVYEDKSFTFIIKTPPASFLLKK AAGIEKGSSEPKRKIVGKVTRKQIEEIAKTKMPDLNANSLEAAMKIIEGTAKSMGIEVVD ; A ? 2 'polypeptide(L)' no yes '(QUA)IA(DHA)AS(BB9)T(DBU)(DCY)(TS9)(BB9)T(BB9)(MH6)(BB9)(DHA)(DHA)(NH2)' XIASASCTTCICTCSCSSX B ? 3 polyribonucleotide no no GCUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGC GCUGGGAUGUUGGCUUAGAAGCAGCCAUCAUUUAAAGAGUGCGUAACAGCUCACCAGC C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 LYS n 1 4 VAL n 1 5 ALA n 1 6 ALA n 1 7 GLN n 1 8 ILE n 1 9 LYS n 1 10 LEU n 1 11 GLN n 1 12 LEU n 1 13 PRO n 1 14 ALA n 1 15 GLY n 1 16 LYS n 1 17 ALA n 1 18 THR n 1 19 PRO n 1 20 ALA n 1 21 PRO n 1 22 PRO n 1 23 VAL n 1 24 GLY n 1 25 PRO n 1 26 ALA n 1 27 LEU n 1 28 GLY n 1 29 GLN n 1 30 HIS n 1 31 GLY n 1 32 VAL n 1 33 ASN n 1 34 ILE n 1 35 MET n 1 36 GLU n 1 37 PHE n 1 38 CYS n 1 39 LYS n 1 40 ARG n 1 41 PHE n 1 42 ASN n 1 43 ALA n 1 44 GLU n 1 45 THR n 1 46 ALA n 1 47 ASP n 1 48 LYS n 1 49 ALA n 1 50 GLY n 1 51 MET n 1 52 ILE n 1 53 LEU n 1 54 PRO n 1 55 VAL n 1 56 VAL n 1 57 ILE n 1 58 THR n 1 59 VAL n 1 60 TYR n 1 61 GLU n 1 62 ASP n 1 63 LYS n 1 64 SER n 1 65 PHE n 1 66 THR n 1 67 PHE n 1 68 ILE n 1 69 ILE n 1 70 LYS n 1 71 THR n 1 72 PRO n 1 73 PRO n 1 74 ALA n 1 75 SER n 1 76 PHE n 1 77 LEU n 1 78 LEU n 1 79 LYS n 1 80 LYS n 1 81 ALA n 1 82 ALA n 1 83 GLY n 1 84 ILE n 1 85 GLU n 1 86 LYS n 1 87 GLY n 1 88 SER n 1 89 SER n 1 90 GLU n 1 91 PRO n 1 92 LYS n 1 93 ARG n 1 94 LYS n 1 95 ILE n 1 96 VAL n 1 97 GLY n 1 98 LYS n 1 99 VAL n 1 100 THR n 1 101 ARG n 1 102 LYS n 1 103 GLN n 1 104 ILE n 1 105 GLU n 1 106 GLU n 1 107 ILE n 1 108 ALA n 1 109 LYS n 1 110 THR n 1 111 LYS n 1 112 MET n 1 113 PRO n 1 114 ASP n 1 115 LEU n 1 116 ASN n 1 117 ALA n 1 118 ASN n 1 119 SER n 1 120 LEU n 1 121 GLU n 1 122 ALA n 1 123 ALA n 1 124 MET n 1 125 LYS n 1 126 ILE n 1 127 ILE n 1 128 GLU n 1 129 GLY n 1 130 THR n 1 131 ALA n 1 132 LYS n 1 133 SER n 1 134 MET n 1 135 GLY n 1 136 ILE n 1 137 GLU n 1 138 VAL n 1 139 VAL n 1 140 ASP n 2 1 QUA n 2 2 ILE n 2 3 ALA n 2 4 DHA n 2 5 ALA n 2 6 SER n 2 7 BB9 n 2 8 THR n 2 9 DBU n 2 10 DCY n 2 11 TS9 n 2 12 BB9 n 2 13 THR n 2 14 BB9 n 2 15 MH6 n 2 16 BB9 n 2 17 DHA n 2 18 DHA n 2 19 NH2 n 3 1 G n 3 2 C n 3 3 U n 3 4 G n 3 5 G n 3 6 G n 3 7 A n 3 8 U n 3 9 G n 3 10 U n 3 11 U n 3 12 G n 3 13 G n 3 14 C n 3 15 U n 3 16 U n 3 17 A n 3 18 G n 3 19 A n 3 20 A n 3 21 G n 3 22 C n 3 23 A n 3 24 G n 3 25 C n 3 26 C n 3 27 A n 3 28 U n 3 29 C n 3 30 A n 3 31 U n 3 32 U n 3 33 U n 3 34 A n 3 35 A n 3 36 A n 3 37 G n 3 38 A n 3 39 G n 3 40 U n 3 41 G n 3 42 C n 3 43 G n 3 44 U n 3 45 A n 3 46 A n 3 47 C n 3 48 A n 3 49 G n 3 50 C n 3 51 U n 3 52 C n 3 53 A n 3 54 C n 3 55 C n 3 56 A n 3 57 G n 3 58 C n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? ? 'THERMOTOGA MARITIMA' 2336 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? ? 'STREPTOMYCES AZUREUS' 146537 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 3 1 sample ? ? ? 'THERMOTOGA MARITIMA' 2336 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform 1 UNP RL11_THEMA 1 ? ? P29395 ? 2 UNP THCL_STRAJ 2 ? ? P0C8P8 ? 3 PDB 1OLN 3 ? ? 1OLN ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1OLN A 1 ? 140 ? P29395 2 ? 141 ? 2 141 2 2 1OLN B 2 ? 18 ? P0C8P8 1 ? 17 ? 1 17 3 3 1OLN C 1 ? 58 ? 1OLN 1051 ? 1108 ? 1051 1108 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BB9 'peptide linking' n '(2Z)-2-amino-3-sulfanylprop-2-enoic acid' ? 'C3 H5 N O2 S' 119.142 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DBU 'peptide linking' n '(2Z)-2-AMINOBUT-2-ENOIC ACID' Z-DEHYDROBUTYRINE 'C4 H7 N O2' 101.104 DCY 'D-peptide linking' . D-CYSTEINE ? 'C3 H7 N O2 S' 121.158 DHA 'peptide linking' n '2-AMINO-ACRYLIC ACID' 2,3-DIDEHYDROALANINE 'C3 H5 N O2' 87.077 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MH6 'peptide linking' n '3-hydroxy-2-iminopropanoic acid' ? 'C3 H5 N O3' 103.077 NH2 non-polymer . 'AMINO GROUP' ? 'H2 N' 16.023 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 QUA non-polymer . '8-HYDROXY-4-(1-HYDROXYETHYL)QUINOLINE-2-CARBOXYLIC ACID' ? 'C12 H13 N O4' 235.236 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TS9 'L-peptide linking' n '(2S,3S,4R)-2-amino-3,4-dihydroxy-3-methylpentanoic acid' ? 'C6 H13 N O4' 163.172 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _pdbx_nmr_exptl.experiment_id 1 _pdbx_nmr_exptl.conditions_id 1 _pdbx_nmr_exptl.type NOESY _pdbx_nmr_exptl.solution_id 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 303 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 6.2 _pdbx_nmr_exptl_sample_conditions.ionic_strength '100 MM NACL, 5 MM MGCL2' _pdbx_nmr_exptl_sample_conditions.ionic_strength_units ? _pdbx_nmr_exptl_sample_conditions.pH_units pH _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 600 # _pdbx_nmr_refine.entry_id 1OLN _pdbx_nmr_refine.method DOCKING/MODELING _pdbx_nmr_refine.details ;THE COORDINATES OF THE PROTEIN, RNA AND THE ANTIBIOTIC WERE HELD RIGID DURING REFINEMENT. THE COORDINATES OF THE RIBOSOMAL L11 (CHAIN A) AND THE RNA (CHAIN C) WERE FROM PDB ENTRY 1MMS. THE COORDINATES OF THE ANTIBIOTIC THIOSTREPTON (CHAIN B) WERE FROM PDB ENTRY 1E9W. REFINEMENT DETAILS CAN BE FOUND IN THE JRNL CITATION. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1OLN _pdbx_nmr_details.text ;BEST OVERALL DOCKING SCORE AND LEAST RESTRAINT VIOLATION. THE NOES INCLUDED IN THE RESTRAINTED MODELING WERE OBTAINED FROM A FILTERED NOESY EXPERIMENT ON A COMPLEX OF UNLABELED THIOSTREPTON WITH THE RNA. AS ALL INTERNAL COORDINATES WERE HELD RIGID ACCORDING TO THE X-RAY STRUCTURES, ONLY INTERMOLECULAR NOES WERE INCLUDED. ASSIGNMENTS FOR RNA WERE CHOSEN FROM AN ITERATIVE DOCKING PROCESS (SEE LENTZEN ET AL AND MANUSCRIPT TO BE PUBLISHED) ; # _pdbx_nmr_ensemble.entry_id 1OLN _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'LEAST RESTRAINT VIOLATION AND BEST OVERALL DOCKING SCORE' # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name rDOCK _pdbx_nmr_software.version ? _pdbx_nmr_software.authors 'DAVID MORLEY' _pdbx_nmr_software.ordinal 1 # loop_ _exptl.entry_id _exptl.method _exptl.crystals_number 1OLN 'SOLUTION NMR' ? 1OLN 'THEORETICAL MODEL' ? # _struct.entry_id 1OLN _struct.title 'Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA' _struct.pdbx_descriptor '50S RIBOSOMAL PROTEIN L11, THIOSTREPTON' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'MINIMIZED AVERAGE' # _struct_keywords.entry_id 1OLN _struct_keywords.pdbx_keywords RIBOSOME/ANTIBIOTIC _struct_keywords.text 'RIBOSOME-ANTIBIOTIC COMPLEX, THIOPEPTIDE, ANTIBACTERIAL, THIAZOLE, OXAZOLE, RIBOSOME, L11, TRANSLATION INHIBITION' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 24 ? GLN A 29 ? GLY A 25 GLN A 30 1 ? 6 HELX_P HELX_P2 2 ASN A 33 ? THR A 45 ? ASN A 34 THR A 46 1 ? 13 HELX_P HELX_P3 3 PRO A 73 ? GLY A 83 ? PRO A 74 GLY A 84 1 ? 11 HELX_P HELX_P4 4 ARG A 101 ? MET A 112 ? ARG A 102 MET A 113 1 ? 12 HELX_P HELX_P5 5 PRO A 113 ? LEU A 115 ? PRO A 114 LEU A 116 5 ? 3 HELX_P HELX_P6 6 SER A 119 ? LYS A 132 ? SER A 120 LYS A 133 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale one ? B QUA 1 C11 ? ? ? 1_555 B THR 13 OG1 ? ? B QUA 0 B THR 12 1_555 ? ? ? ? ? ? ? 1.329 ? covale2 covale one ? B QUA 1 C7 ? ? ? 1_555 B ILE 2 N ? ? B QUA 0 B ILE 1 1_555 ? ? ? ? ? ? ? 1.499 ? covale3 covale both ? B ALA 3 C ? ? ? 1_555 B DHA 4 N ? ? B ALA 2 B DHA 3 1_555 ? ? ? ? ? ? ? 1.383 ? covale4 covale both ? B DHA 4 C ? ? ? 1_555 B ALA 5 N ? ? B DHA 3 B ALA 4 1_555 ? ? ? ? ? ? ? 1.348 ? covale5 covale one ? B SER 6 C ? ? ? 1_555 B BB9 7 SG ? ? B SER 5 B BB9 6 1_555 ? ? ? ? ? ? ? 1.752 ? covale6 covale one ? B SER 6 CA ? ? ? 1_555 B BB9 14 C ? ? B SER 5 B BB9 13 1_555 ? ? ? ? ? ? ? 1.575 ? covale7 covale one ? B SER 6 CB ? ? ? 1_555 B MH6 15 CB ? ? B SER 5 B MH6 14 1_555 ? ? ? ? ? ? ? 1.524 ? covale8 covale both ? B SER 6 C ? ? ? 1_555 B BB9 7 N ? ? B SER 5 B BB9 6 1_555 ? ? ? ? ? ? ? 1.306 ? covale9 covale both ? B BB9 7 C ? ? ? 1_555 B THR 8 N ? ? B BB9 6 B THR 7 1_555 ? ? ? ? ? ? ? 1.323 ? covale10 covale both ? B THR 8 C ? ? ? 1_555 B DBU 9 N ? ? B THR 7 B DBU 8 1_555 ? ? ? ? ? ? ? 1.352 ? covale11 covale both ? B DBU 9 C ? ? ? 1_555 B DCY 10 N ? ? B DBU 8 B DCY 9 1_555 ? ? ? ? ? ? ? 1.294 ? covale12 covale one ? B DBU 9 C ? ? ? 1_555 B DCY 10 SG ? ? B DBU 8 B DCY 9 1_555 ? ? ? ? ? ? ? 1.749 ? covale13 covale both ? B DCY 10 C ? ? ? 1_555 B TS9 11 N ? ? B DCY 9 B TS9 10 1_555 ? ? ? ? ? ? ? 1.328 ? covale14 covale one ? B TS9 11 C ? ? ? 1_555 B BB9 12 SG ? ? B TS9 10 B BB9 11 1_555 ? ? ? ? ? ? ? 1.750 ? covale15 covale both ? B TS9 11 C ? ? ? 1_555 B BB9 12 N ? ? B TS9 10 B BB9 11 1_555 ? ? ? ? ? ? ? 1.279 ? covale16 covale both ? B BB9 12 C ? ? ? 1_555 B THR 13 N ? ? B BB9 11 B THR 12 1_555 ? ? ? ? ? ? ? 1.359 ? covale17 covale one ? B THR 13 C ? ? ? 1_555 B BB9 14 SG ? ? B THR 12 B BB9 13 1_555 ? ? ? ? ? ? ? 1.708 ? covale18 covale both ? B THR 13 C ? ? ? 1_555 B BB9 14 N ? ? B THR 12 B BB9 13 1_555 ? ? ? ? ? ? ? 1.292 ? covale19 covale both ? B BB9 14 C ? ? ? 1_555 B MH6 15 N ? ? B BB9 13 B MH6 14 1_555 ? ? ? ? ? ? ? 1.474 ? covale20 covale one ? B MH6 15 C ? ? ? 1_555 B BB9 16 SG ? ? B MH6 14 B BB9 15 1_555 ? ? ? ? ? ? ? 1.650 ? covale21 covale both ? B MH6 15 C ? ? ? 1_555 B BB9 16 N ? ? B MH6 14 B BB9 15 1_555 ? ? ? ? ? ? ? 1.301 ? covale22 covale both ? B BB9 16 C ? ? ? 1_555 B DHA 17 N ? ? B BB9 15 B DHA 16 1_555 ? ? ? ? ? ? ? 1.380 ? covale23 covale both ? B DHA 17 C ? ? ? 1_555 B DHA 18 N ? ? B DHA 16 B DHA 17 1_555 ? ? ? ? ? ? ? 1.229 ? covale24 covale both ? B DHA 18 C ? ? ? 1_555 B NH2 19 N ? ? B DHA 17 B NH2 18 1_555 ? ? ? ? ? ? ? 1.350 ? hydrog1 hydrog ? ? C G 1 N1 ? ? ? 1_555 C C 58 N3 ? ? C G 1051 C C 1108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? C G 1 N2 ? ? ? 1_555 C C 58 O2 ? ? C G 1051 C C 1108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? C G 1 O6 ? ? ? 1_555 C C 58 N4 ? ? C G 1051 C C 1108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? C C 2 N3 ? ? ? 1_555 C G 57 N1 ? ? C C 1052 C G 1107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? C C 2 N4 ? ? ? 1_555 C G 57 O6 ? ? C C 1052 C G 1107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? C C 2 O2 ? ? ? 1_555 C G 57 N2 ? ? C C 1052 C G 1107 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? C U 3 N3 ? ? ? 1_555 C A 56 N1 ? ? C U 1053 C A 1106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? C U 3 O4 ? ? ? 1_555 C A 56 N6 ? ? C U 1053 C A 1106 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? C G 4 N1 ? ? ? 1_555 C C 55 N3 ? ? C G 1054 C C 1105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? C G 4 N2 ? ? ? 1_555 C C 55 O2 ? ? C G 1054 C C 1105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog11 hydrog ? ? C G 4 O6 ? ? ? 1_555 C C 55 N4 ? ? C G 1054 C C 1105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog12 hydrog ? ? C G 5 N2 ? ? ? 1_555 C A 35 N3 ? ? C G 1055 C A 1085 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? hydrog13 hydrog ? ? C G 5 N1 ? ? ? 1_555 C C 54 N3 ? ? C G 1055 C C 1104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? C G 5 N2 ? ? ? 1_555 C C 54 O2 ? ? C G 1055 C C 1104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? C G 5 O6 ? ? ? 1_555 C C 54 N4 ? ? C G 1055 C C 1104 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? C G 6 N2 ? ? ? 1_555 C A 53 N7 ? ? C G 1056 C A 1103 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog17 hydrog ? ? C G 6 N3 ? ? ? 1_555 C A 53 N6 ? ? C G 1056 C A 1103 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog18 hydrog ? ? C A 7 N1 ? ? ? 1_555 C U 31 N3 ? ? C A 1057 C U 1081 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog19 hydrog ? ? C A 7 N6 ? ? ? 1_555 C U 31 O4 ? ? C A 1057 C U 1081 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog20 hydrog ? ? C U 8 N3 ? ? ? 1_555 C A 30 N1 ? ? C U 1058 C A 1080 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog21 hydrog ? ? C U 8 O4 ? ? ? 1_555 C A 30 N6 ? ? C U 1058 C A 1080 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog22 hydrog ? ? C G 9 N1 ? ? ? 1_555 C C 29 N3 ? ? C G 1059 C C 1079 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? C G 9 N2 ? ? ? 1_555 C C 29 O2 ? ? C G 1059 C C 1079 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? C G 9 O6 ? ? ? 1_555 C C 29 N4 ? ? C G 1059 C C 1079 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? C U 10 N3 ? ? ? 1_555 C A 38 N7 ? ? C U 1060 C A 1088 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog26 hydrog ? ? C U 10 O4 ? ? ? 1_555 C A 38 N6 ? ? C U 1060 C A 1088 1_555 ? ? ? ? ? ? HOOGSTEEN ? ? hydrog27 hydrog ? ? C G 12 N1 ? ? ? 1_555 C C 26 N3 ? ? C G 1062 C C 1076 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? C G 12 N2 ? ? ? 1_555 C C 26 O2 ? ? C G 1062 C C 1076 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? C G 12 O6 ? ? ? 1_555 C C 26 N4 ? ? C G 1062 C C 1076 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? C G 13 N1 ? ? ? 1_555 C C 25 N3 ? ? C G 1063 C C 1075 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? C G 13 N2 ? ? ? 1_555 C C 25 O2 ? ? C G 1063 C C 1075 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? C G 13 O6 ? ? ? 1_555 C C 25 N4 ? ? C G 1063 C C 1075 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? C C 14 N3 ? ? ? 1_555 C G 24 N1 ? ? C C 1064 C G 1074 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? C C 14 N4 ? ? ? 1_555 C G 24 O6 ? ? C C 1064 C G 1074 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog35 hydrog ? ? C C 14 O2 ? ? ? 1_555 C G 24 N2 ? ? C C 1064 C G 1074 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog36 hydrog ? ? C U 15 O2 ? ? ? 1_555 C A 23 N6 ? ? C U 1065 C A 1073 1_555 ? ? ? ? ? ? 'U-A PAIR' ? ? hydrog37 hydrog ? ? C G 21 N1 ? ? ? 1_555 C G 41 O6 ? ? C G 1071 C G 1091 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog38 hydrog ? ? C G 21 N2 ? ? ? 1_555 C G 41 N7 ? ? C G 1071 C G 1091 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? hydrog39 hydrog ? ? C G 21 O6 ? ? ? 1_555 C C 50 N4 ? ? C G 1071 C C 1100 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? hydrog40 hydrog ? ? C C 22 N3 ? ? ? 1_555 C C 42 N4 ? ? C C 1072 C C 1092 1_555 ? ? ? ? ? ? 'C-C MISPAIR' ? ? hydrog41 hydrog ? ? C C 22 N4 ? ? ? 1_555 C G 49 O6 ? ? C C 1072 C G 1099 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? hydrog42 hydrog ? ? C U 32 N3 ? ? ? 1_555 C A 36 N1 ? ? C U 1082 C A 1086 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog43 hydrog ? ? C U 32 O2 ? ? ? 1_555 C A 36 N6 ? ? C U 1082 C A 1086 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog44 hydrog ? ? C G 37 N1 ? ? ? 1_555 C C 52 N3 ? ? C G 1087 C C 1102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? C G 37 N2 ? ? ? 1_555 C C 52 O2 ? ? C G 1087 C C 1102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? C G 37 O6 ? ? ? 1_555 C C 52 N4 ? ? C G 1087 C C 1102 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? C G 39 N2 ? ? ? 1_555 C U 51 O4 ? ? C G 1089 C U 1101 1_555 ? ? ? ? ? ? 'G-U MISPAIR' ? ? hydrog48 hydrog ? ? C U 40 N3 ? ? ? 1_555 C U 51 O2 ? ? C U 1090 C U 1101 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog49 hydrog ? ? C U 40 O4 ? ? ? 1_555 C U 51 N3 ? ? C U 1090 C U 1101 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? hydrog50 hydrog ? ? C G 41 N1 ? ? ? 1_555 C C 50 N3 ? ? C G 1091 C C 1100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? C G 41 N2 ? ? ? 1_555 C C 50 O2 ? ? C G 1091 C C 1100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? C G 41 O6 ? ? ? 1_555 C C 50 N4 ? ? C G 1091 C C 1100 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? C C 42 N3 ? ? ? 1_555 C G 49 N1 ? ? C C 1092 C G 1099 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? C C 42 N4 ? ? ? 1_555 C G 49 O6 ? ? C C 1092 C G 1099 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? C C 42 O2 ? ? ? 1_555 C G 49 N2 ? ? C C 1092 C G 1099 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog56 hydrog ? ? C G 43 N2 ? ? ? 1_555 C A 48 N7 ? ? C G 1093 C A 1098 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? hydrog57 hydrog ? ? C G 43 N3 ? ? ? 1_555 C A 48 N6 ? ? C G 1093 C A 1098 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details AA ? 3 ? AB ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense AA 1 2 ? anti-parallel AA 2 3 ? anti-parallel AB 1 2 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id AA 1 ILE A 8 ? PRO A 13 ? ILE A 9 PRO A 14 AA 2 ILE A 52 ? VAL A 59 ? ILE A 53 VAL A 60 AA 3 PHE A 65 ? ILE A 69 ? PHE A 66 ILE A 70 AB 1 GLY A 97 ? THR A 100 ? GLY A 98 THR A 101 AB 2 ILE A 136 ? VAL A 139 ? ILE A 137 VAL A 140 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id AA 1 2 N LEU A 12 ? N LEU A 13 O LEU A 53 ? O LEU A 54 AA 2 3 N THR A 58 ? N THR A 59 O THR A 66 ? O THR A 67 AB 1 2 N VAL A 99 ? N VAL A 100 O GLU A 137 ? O GLU A 138 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR CHAIN B OF THIOSTREPTON' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 PRO A 21 ? PRO A 22 . ? 1_555 ? 2 AC1 4 A C 17 ? A C 1067 . ? 1_555 ? 3 AC1 4 G C 18 ? G C 1068 . ? 1_555 ? 4 AC1 4 A C 45 ? A C 1095 . ? 1_555 ? # _database_PDB_matrix.entry_id 1OLN _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1OLN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 2 ? ? ? A . n A 1 2 LYS 2 3 ? ? ? A . n A 1 3 LYS 3 4 ? ? ? A . n A 1 4 VAL 4 5 ? ? ? A . n A 1 5 ALA 5 6 ? ? ? A . n A 1 6 ALA 6 7 ? ? ? A . n A 1 7 GLN 7 8 8 GLN GLN A . n A 1 8 ILE 8 9 9 ILE ILE A . n A 1 9 LYS 9 10 10 LYS LYS A . n A 1 10 LEU 10 11 11 LEU LEU A . n A 1 11 GLN 11 12 12 GLN GLN A . n A 1 12 LEU 12 13 13 LEU LEU A . n A 1 13 PRO 13 14 14 PRO PRO A . n A 1 14 ALA 14 15 15 ALA ALA A . n A 1 15 GLY 15 16 16 GLY GLY A . n A 1 16 LYS 16 17 17 LYS LYS A . n A 1 17 ALA 17 18 18 ALA ALA A . n A 1 18 THR 18 19 19 THR THR A . n A 1 19 PRO 19 20 20 PRO PRO A . n A 1 20 ALA 20 21 21 ALA ALA A . n A 1 21 PRO 21 22 22 PRO PRO A . n A 1 22 PRO 22 23 23 PRO PRO A . n A 1 23 VAL 23 24 24 VAL VAL A . n A 1 24 GLY 24 25 25 GLY GLY A . n A 1 25 PRO 25 26 26 PRO PRO A . n A 1 26 ALA 26 27 27 ALA ALA A . n A 1 27 LEU 27 28 28 LEU LEU A . n A 1 28 GLY 28 29 29 GLY GLY A . n A 1 29 GLN 29 30 30 GLN GLN A . n A 1 30 HIS 30 31 31 HIS HIS A . n A 1 31 GLY 31 32 32 GLY GLY A . n A 1 32 VAL 32 33 33 VAL VAL A . n A 1 33 ASN 33 34 34 ASN ASN A . n A 1 34 ILE 34 35 35 ILE ILE A . n A 1 35 MET 35 36 36 MET MET A . n A 1 36 GLU 36 37 37 GLU GLU A . n A 1 37 PHE 37 38 38 PHE PHE A . n A 1 38 CYS 38 39 39 CYS CYS A . n A 1 39 LYS 39 40 40 LYS LYS A . n A 1 40 ARG 40 41 41 ARG ARG A . n A 1 41 PHE 41 42 42 PHE PHE A . n A 1 42 ASN 42 43 43 ASN ASN A . n A 1 43 ALA 43 44 44 ALA ALA A . n A 1 44 GLU 44 45 45 GLU GLU A . n A 1 45 THR 45 46 46 THR THR A . n A 1 46 ALA 46 47 47 ALA ALA A . n A 1 47 ASP 47 48 48 ASP ASP A . n A 1 48 LYS 48 49 49 LYS LYS A . n A 1 49 ALA 49 50 50 ALA ALA A . n A 1 50 GLY 50 51 51 GLY GLY A . n A 1 51 MET 51 52 52 MET MET A . n A 1 52 ILE 52 53 53 ILE ILE A . n A 1 53 LEU 53 54 54 LEU LEU A . n A 1 54 PRO 54 55 55 PRO PRO A . n A 1 55 VAL 55 56 56 VAL VAL A . n A 1 56 VAL 56 57 57 VAL VAL A . n A 1 57 ILE 57 58 58 ILE ILE A . n A 1 58 THR 58 59 59 THR THR A . n A 1 59 VAL 59 60 60 VAL VAL A . n A 1 60 TYR 60 61 61 TYR TYR A . n A 1 61 GLU 61 62 62 GLU GLU A . n A 1 62 ASP 62 63 63 ASP ASP A . n A 1 63 LYS 63 64 64 LYS LYS A . n A 1 64 SER 64 65 65 SER SER A . n A 1 65 PHE 65 66 66 PHE PHE A . n A 1 66 THR 66 67 67 THR THR A . n A 1 67 PHE 67 68 68 PHE PHE A . n A 1 68 ILE 68 69 69 ILE ILE A . n A 1 69 ILE 69 70 70 ILE ILE A . n A 1 70 LYS 70 71 71 LYS LYS A . n A 1 71 THR 71 72 72 THR THR A . n A 1 72 PRO 72 73 73 PRO PRO A . n A 1 73 PRO 73 74 74 PRO PRO A . n A 1 74 ALA 74 75 75 ALA ALA A . n A 1 75 SER 75 76 76 SER SER A . n A 1 76 PHE 76 77 77 PHE PHE A . n A 1 77 LEU 77 78 78 LEU LEU A . n A 1 78 LEU 78 79 79 LEU LEU A . n A 1 79 LYS 79 80 80 LYS LYS A . n A 1 80 LYS 80 81 81 LYS LYS A . n A 1 81 ALA 81 82 82 ALA ALA A . n A 1 82 ALA 82 83 83 ALA ALA A . n A 1 83 GLY 83 84 84 GLY GLY A . n A 1 84 ILE 84 85 85 ILE ILE A . n A 1 85 GLU 85 86 86 GLU GLU A . n A 1 86 LYS 86 87 87 LYS LYS A . n A 1 87 GLY 87 88 88 GLY GLY A . n A 1 88 SER 88 89 89 SER SER A . n A 1 89 SER 89 90 90 SER SER A . n A 1 90 GLU 90 91 91 GLU GLU A . n A 1 91 PRO 91 92 92 PRO PRO A . n A 1 92 LYS 92 93 93 LYS LYS A . n A 1 93 ARG 93 94 94 ARG ARG A . n A 1 94 LYS 94 95 95 LYS LYS A . n A 1 95 ILE 95 96 96 ILE ILE A . n A 1 96 VAL 96 97 97 VAL VAL A . n A 1 97 GLY 97 98 98 GLY GLY A . n A 1 98 LYS 98 99 99 LYS LYS A . n A 1 99 VAL 99 100 100 VAL VAL A . n A 1 100 THR 100 101 101 THR THR A . n A 1 101 ARG 101 102 102 ARG ARG A . n A 1 102 LYS 102 103 103 LYS LYS A . n A 1 103 GLN 103 104 104 GLN GLN A . n A 1 104 ILE 104 105 105 ILE ILE A . n A 1 105 GLU 105 106 106 GLU GLU A . n A 1 106 GLU 106 107 107 GLU GLU A . n A 1 107 ILE 107 108 108 ILE ILE A . n A 1 108 ALA 108 109 109 ALA ALA A . n A 1 109 LYS 109 110 110 LYS LYS A . n A 1 110 THR 110 111 111 THR THR A . n A 1 111 LYS 111 112 112 LYS LYS A . n A 1 112 MET 112 113 113 MET MET A . n A 1 113 PRO 113 114 114 PRO PRO A . n A 1 114 ASP 114 115 115 ASP ASP A . n A 1 115 LEU 115 116 116 LEU LEU A . n A 1 116 ASN 116 117 117 ASN ASN A . n A 1 117 ALA 117 118 118 ALA ALA A . n A 1 118 ASN 118 119 119 ASN ASN A . n A 1 119 SER 119 120 120 SER SER A . n A 1 120 LEU 120 121 121 LEU LEU A . n A 1 121 GLU 121 122 122 GLU GLU A . n A 1 122 ALA 122 123 123 ALA ALA A . n A 1 123 ALA 123 124 124 ALA ALA A . n A 1 124 MET 124 125 125 MET MET A . n A 1 125 LYS 125 126 126 LYS LYS A . n A 1 126 ILE 126 127 127 ILE ILE A . n A 1 127 ILE 127 128 128 ILE ILE A . n A 1 128 GLU 128 129 129 GLU GLU A . n A 1 129 GLY 129 130 130 GLY GLY A . n A 1 130 THR 130 131 131 THR THR A . n A 1 131 ALA 131 132 132 ALA ALA A . n A 1 132 LYS 132 133 133 LYS LYS A . n A 1 133 SER 133 134 134 SER SER A . n A 1 134 MET 134 135 135 MET MET A . n A 1 135 GLY 135 136 136 GLY GLY A . n A 1 136 ILE 136 137 137 ILE ILE A . n A 1 137 GLU 137 138 138 GLU GLU A . n A 1 138 VAL 138 139 139 VAL VAL A . n A 1 139 VAL 139 140 140 VAL VAL A . n A 1 140 ASP 140 141 ? ? ? A . n B 2 1 QUA 1 0 0 QUA QUA B . n B 2 2 ILE 2 1 1 ILE ILE B . n B 2 3 ALA 3 2 2 ALA ALA B . n B 2 4 DHA 4 3 3 DHA DHA B . n B 2 5 ALA 5 4 4 ALA ALA B . n B 2 6 SER 6 5 5 SER SER B . n B 2 7 BB9 7 6 6 BB9 BB9 B . n B 2 8 THR 8 7 7 THR THR B . n B 2 9 DBU 9 8 8 DBU DBU B . n B 2 10 DCY 10 9 9 DCY DCY B . n B 2 11 TS9 11 10 10 TS9 TS9 B . n B 2 12 BB9 12 11 11 BB9 BB9 B . n B 2 13 THR 13 12 12 THR THR B . n B 2 14 BB9 14 13 13 BB9 BB9 B . n B 2 15 MH6 15 14 14 MH6 MH6 B . n B 2 16 BB9 16 15 15 BB9 BB9 B . n B 2 17 DHA 17 16 16 DHA DHA B . n B 2 18 DHA 18 17 17 DHA DHA B . n B 2 19 NH2 19 18 18 NH2 NH2 B . n C 3 1 G 1 1051 1051 G G C . n C 3 2 C 2 1052 1052 C C C . n C 3 3 U 3 1053 1053 U U C . n C 3 4 G 4 1054 1054 G G C . n C 3 5 G 5 1055 1055 G G C . n C 3 6 G 6 1056 1056 G G C . n C 3 7 A 7 1057 1057 A A C . n C 3 8 U 8 1058 1058 U U C . n C 3 9 G 9 1059 1059 G G C . n C 3 10 U 10 1060 1060 U U C . n C 3 11 U 11 1061 1061 U U C . n C 3 12 G 12 1062 1062 G G C . n C 3 13 G 13 1063 1063 G G C . n C 3 14 C 14 1064 1064 C C C . n C 3 15 U 15 1065 1065 U U C . n C 3 16 U 16 1066 1066 U U C . n C 3 17 A 17 1067 1067 A A C . n C 3 18 G 18 1068 1068 G G C . n C 3 19 A 19 1069 1069 A A C . n C 3 20 A 20 1070 1070 A A C . n C 3 21 G 21 1071 1071 G G C . n C 3 22 C 22 1072 1072 C C C . n C 3 23 A 23 1073 1073 A A C . n C 3 24 G 24 1074 1074 G G C . n C 3 25 C 25 1075 1075 C C C . n C 3 26 C 26 1076 1076 C C C . n C 3 27 A 27 1077 1077 A A C . n C 3 28 U 28 1078 1078 U U C . n C 3 29 C 29 1079 1079 C C C . n C 3 30 A 30 1080 1080 A A C . n C 3 31 U 31 1081 1081 U U C . n C 3 32 U 32 1082 1082 U U C . n C 3 33 U 33 1083 1083 U U C . n C 3 34 A 34 1084 1084 A A C . n C 3 35 A 35 1085 1085 A A C . n C 3 36 A 36 1086 1086 A A C . n C 3 37 G 37 1087 1087 G G C . n C 3 38 A 38 1088 1088 A A C . n C 3 39 G 39 1089 1089 G G C . n C 3 40 U 40 1090 1090 U U C . n C 3 41 G 41 1091 1091 G G C . n C 3 42 C 42 1092 1092 C C C . n C 3 43 G 43 1093 1093 G G C . n C 3 44 U 44 1094 1094 U U C . n C 3 45 A 45 1095 1095 A A C . n C 3 46 A 46 1096 1096 A A C . n C 3 47 C 47 1097 1097 C C C . n C 3 48 A 48 1098 1098 A A C . n C 3 49 G 49 1099 1099 G G C . n C 3 50 C 50 1100 1100 C C C . n C 3 51 U 51 1101 1101 U U C . n C 3 52 C 52 1102 1102 C C C . n C 3 53 A 53 1103 1103 A A C . n C 3 54 C 54 1104 1104 C C C . n C 3 55 C 55 1105 1105 C C C . n C 3 56 A 56 1106 1106 A A C . n C 3 57 G 57 1107 1107 G G C . n C 3 58 C 58 1108 1108 C C C . n # _pdbx_molecule_features.prd_id PRD_000223 _pdbx_molecule_features.name THIOSTREPTON _pdbx_molecule_features.type Thiopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ;Thiostrepton is a hetrocyclic thiopeptide belonging to the thiocillin family, consisting of four thiazole, one thiozoline and one piperideine rings. A modified quinoline linked to main-chain residue 1 and side-chain of residue 12. Post translational maturation of thiazole and oxazole containing antibiotics involves the enzymic condensation of a Cys or Ser with the alpha-carbonyl of the preceding amino acid to form a thioether or ether bond, then dehydration to form a double bond with the alpha-amino nitrogen. Thiazoline or oxazoline ring are dehydrogenated to form thiazole or oxazole rings. the pyridinyl involves the cross-linking of a Ser and a Cys-Ser pair usually separated by 7 or 8 residues along the peptide chain. The Ser residues are dehydrated to didehydroalanines, then bonded between their beta carbons. The alpha carbonyl of the Cys condenses with alpha carbon of the first Ser to form a pyridinyl ring. The ring may be mutiply dehydrogenated to form a pyridine ring with loss of the amino nitrogen of the first Ser. The amidation of Ser-17 probably does not occur by the same mechanism, oxidative cleavage of glycine, as in eukaryotes. ; # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000223 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 B DHA 4 B DHA 3 ? SER '2-AMINO-ACRYLIC ACID' 2 B BB9 7 B BB9 6 ? CYS ? 3 B DBU 9 B DBU 8 ? THR '(2Z)-2-AMINOBUT-2-ENOIC ACID' 4 B TS9 11 B TS9 10 ? ILE ? 5 B BB9 12 B BB9 11 ? CYS ? 6 B BB9 14 B BB9 13 ? CYS ? 7 B MH6 15 B MH6 14 ? SER '3-HYDROXY-2-IMINOPROPANOIC ACID' 8 B BB9 16 B BB9 15 ? CYS ? 9 B DHA 17 B DHA 16 ? SER '2-AMINO-ACRYLIC ACID' 10 B DHA 18 B DHA 17 ? SER '2-AMINO-ACRYLIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-09-11 2 'Structure model' 1 1 2011-07-13 3 'Structure model' 1 2 2012-11-30 4 'Structure model' 1 3 2017-11-15 5 'Structure model' 2 0 2019-04-24 6 'Structure model' 2 1 2019-08-21 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Atomic model' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Structure summary' 5 2 'Structure model' 'Version format compliance' 6 3 'Structure model' Other 7 4 'Structure model' 'Database references' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Derived calculations' 10 5 'Structure model' 'Polymer sequence' 11 6 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' pdbx_database_related 2 5 'Structure model' database_PDB_rev 3 5 'Structure model' database_PDB_rev_record 4 5 'Structure model' entity_poly 5 5 'Structure model' pdbx_seq_map_depositor_info 6 5 'Structure model' struct_conn 7 6 'Structure model' pdbx_nmr_software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_pdbx_database_related.db_name' 2 5 'Structure model' '_entity_poly.pdbx_seq_one_letter_code_can' 3 5 'Structure model' '_pdbx_seq_map_depositor_info.one_letter_code' 4 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 6 'Structure model' '_pdbx_nmr_software.name' # _pdbx_entry_details.entry_id 1OLN _pdbx_entry_details.compound_details ;THIOSTREPTON IS A MEMBER OF A SULPHUR-RICH HETEROCYCLIC PEPTIDES CLASS. ALL SHARE A MACROCYLIC CORE, CONSISTING OF A NITROGEN CONTAINING, SIX-MEMBERED RING CENTRAL TO DEHYDROAMINO ACIDS AND A SUBSET OF FIVE MEMBER RING STRUCTURES INCLUDING THIAZOLES, THIAZOLINES AND OXAZOLES. HERE, THIOSTREPTON IS REPRESENTED BY THE SEQUENCE (SEQRES) GROUP: 1 NAME: THIOSTREPTON CHAIN: B COMPONENT_1: PEPTIDE LIKE SEQUENCE RESIDUES 0 TO 18 DESCRIPTION: THIOSTREPTON IS A HETEROCYCLIC THIOPEPTIDE, CONSISTING OF FOUR THIAZOLES ONE THIAZOLINE ONE PIPERIDEINE RINGS. A MODIFIED QUINOLINE LINKED TO MAIN-CHAIN RESIDUE 1 AND SIDE-CHAIN OF RESIDUE 12. THE OBSERVED C-TERMINAL AMINO GROUP NH2(18) IS LIKELY TO BE A POST-TRANSLATIONAL DECARBOXYLATED REMNANT OF A SER C-TERMINAL RESIDUE. ; _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 C _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 BB9 _pdbx_validate_rmsd_bond.auth_seq_id_1 13 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 N _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 MH6 _pdbx_validate_rmsd_bond.auth_seq_id_2 14 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.474 _pdbx_validate_rmsd_bond.bond_target_value 1.336 _pdbx_validate_rmsd_bond.bond_deviation 0.138 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.023 _pdbx_validate_rmsd_bond.linker_flag Y # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ALA A 15 ? ? -38.18 -99.29 2 1 LYS A 17 ? ? -176.59 140.91 3 1 THR A 19 ? ? 95.17 -25.33 4 1 VAL A 24 ? ? -94.06 -92.82 5 1 PRO A 26 ? ? -28.71 -52.70 6 1 ALA A 27 ? ? -39.55 -89.24 7 1 ILE A 35 ? ? -27.29 -73.68 8 1 GLU A 62 ? ? -34.81 -34.92 9 1 LYS A 64 ? ? 68.48 -9.28 10 1 LYS A 93 ? ? 75.48 -42.99 11 1 SER B 5 ? ? 71.83 80.85 12 1 DCY B 9 ? ? -147.29 -14.72 13 1 TS9 B 10 ? ? -107.46 -65.50 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id A _pdbx_validate_planes.auth_asym_id C _pdbx_validate_planes.auth_seq_id 1069 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.061 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 2 ? A ALA 1 2 1 Y 1 A LYS 3 ? A LYS 2 3 1 Y 1 A LYS 4 ? A LYS 3 4 1 Y 1 A VAL 5 ? A VAL 4 5 1 Y 1 A ALA 6 ? A ALA 5 6 1 Y 1 A ALA 7 ? A ALA 6 7 1 Y 1 A ASP 141 ? A ASP 140 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1OLN 'double helix' 1OLN 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 C G 1 1_555 C C 58 1_555 -0.453 0.102 -0.068 -6.725 -8.819 6.827 1 C_G1051:C1108_C C 1051 ? C 1108 ? 19 1 1 C C 2 1_555 C G 57 1_555 0.367 -0.289 0.141 -3.133 -17.311 5.150 2 C_C1052:G1107_C C 1052 ? C 1107 ? 19 1 1 C U 3 1_555 C A 56 1_555 -0.887 -0.018 0.105 -6.222 -13.374 9.602 3 C_U1053:A1106_C C 1053 ? C 1106 ? 20 1 1 C G 4 1_555 C C 55 1_555 -0.457 -0.057 0.085 -2.780 -8.463 5.038 4 C_G1054:C1105_C C 1054 ? C 1105 ? 19 1 1 C G 5 1_555 C C 54 1_555 0.126 -0.229 -0.448 -13.474 -14.487 2.434 5 C_G1055:C1104_C C 1055 ? C 1104 ? 19 1 1 C G 6 1_555 C A 53 1_555 6.768 -4.215 -0.139 -17.709 -10.873 -5.174 6 C_G1056:A1103_C C 1056 ? C 1103 ? 11 10 1 C G 37 1_555 C C 52 1_555 -0.265 0.011 -0.387 -11.911 -0.941 4.348 7 C_G1087:C1102_C C 1087 ? C 1102 ? 19 1 1 C U 40 1_555 C U 51 1_555 -2.485 -1.763 0.037 -6.809 -5.982 20.218 8 C_U1090:U1101_C C 1090 ? C 1101 ? 16 1 1 C G 41 1_555 C C 50 1_555 -0.212 -0.084 -0.356 -2.787 0.730 7.170 9 C_G1091:C1100_C C 1091 ? C 1100 ? 19 1 1 C C 42 1_555 C G 49 1_555 -0.037 -0.275 -0.243 0.573 0.181 3.261 10 C_C1092:G1099_C C 1092 ? C 1099 ? 19 1 1 C G 43 1_555 C A 48 1_555 6.806 -4.083 -0.058 -6.476 0.815 -5.736 11 C_G1093:A1098_C C 1093 ? C 1098 ? 11 10 1 C A 36 1_555 C U 32 1_555 0.232 1.405 -0.283 18.891 -6.288 168.228 12 C_A1086:U1082_C C 1086 ? C 1082 ? 21 2 1 C A 7 1_555 C U 31 1_555 0.092 -0.028 0.123 -1.018 -19.131 8.423 13 C_A1057:U1081_C C 1057 ? C 1081 ? 20 1 1 C U 8 1_555 C A 30 1_555 -0.197 -0.108 0.082 -15.671 -7.542 6.802 14 C_U1058:A1080_C C 1058 ? C 1080 ? 20 1 1 C G 9 1_555 C C 29 1_555 -0.131 -0.257 0.144 -7.401 -4.623 -4.126 15 C_G1059:C1079_C C 1059 ? C 1079 ? 19 1 1 C U 10 1_555 C A 38 1_555 -0.630 3.398 0.653 -2.629 5.058 -67.855 16 C_U1060:A1088_C C 1060 ? C 1088 ? 23 3 1 C G 12 1_555 C C 26 1_555 -0.273 -0.151 -0.214 1.559 -5.131 -3.633 17 C_G1062:C1076_C C 1062 ? C 1076 ? 19 1 1 C G 13 1_555 C C 25 1_555 -0.297 -0.380 -0.472 -8.395 -16.562 0.132 18 C_G1063:C1075_C C 1063 ? C 1075 ? 19 1 1 C C 14 1_555 C G 24 1_555 0.340 -0.331 -0.118 -4.999 -14.637 4.496 19 C_C1064:G1074_C C 1064 ? C 1074 ? 19 1 1 C U 15 1_555 C A 23 1_555 5.606 -1.138 -0.137 -9.754 -5.636 6.689 20 C_U1065:A1073_C C 1065 ? C 1073 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 C G 1 1_555 C C 58 1_555 C C 2 1_555 C G 57 1_555 -0.428 -1.249 3.065 -2.682 7.815 36.267 -2.901 0.348 2.770 12.357 4.242 37.165 1 CC_G1051C1052:G1107C1108_CC C 1051 ? C 1108 ? C 1052 ? C 1107 ? 1 C C 2 1_555 C G 57 1_555 C U 3 1_555 C A 56 1_555 0.385 -1.138 3.139 -0.239 12.505 27.480 -4.454 -0.784 2.401 24.763 0.472 30.143 2 CC_C1052U1053:A1106G1107_CC C 1052 ? C 1107 ? C 1053 ? C 1106 ? 1 C U 3 1_555 C A 56 1_555 C G 4 1_555 C C 55 1_555 0.051 -1.230 3.216 -1.519 5.078 32.776 -2.967 -0.333 2.992 8.926 2.670 33.191 3 CC_U1053G1054:C1105A1106_CC C 1053 ? C 1106 ? C 1054 ? C 1105 ? 1 C G 4 1_555 C C 55 1_555 C G 5 1_555 C C 54 1_555 0.195 -1.744 3.587 1.714 11.219 32.620 -4.708 -0.059 2.856 19.262 -2.943 34.487 4 CC_G1054G1055:C1104C1105_CC C 1054 ? C 1105 ? C 1055 ? C 1104 ? 1 C G 5 1_555 C C 54 1_555 C G 6 1_555 C A 53 1_555 -0.498 -0.666 3.644 3.331 10.803 66.035 -1.070 0.595 3.486 9.838 -3.034 66.888 5 CC_G1055G1056:A1103C1104_CC C 1055 ? C 1104 ? C 1056 ? C 1103 ? 1 C G 6 1_555 C A 53 1_555 C G 37 1_555 C C 52 1_555 -3.406 0.612 3.246 8.328 3.350 37.659 0.557 6.056 2.508 5.102 -12.681 38.676 6 CC_G1056G1087:C1102A1103_CC C 1056 ? C 1103 ? C 1087 ? C 1102 ? 1 C G 37 1_555 C C 52 1_555 C U 40 1_555 C U 51 1_555 -0.921 -3.414 3.388 2.664 -3.260 37.233 -4.858 1.808 3.591 -5.086 -4.156 37.462 7 CC_G1087U1090:U1101C1102_CC C 1087 ? C 1102 ? C 1090 ? C 1101 ? 1 C U 40 1_555 C U 51 1_555 C G 41 1_555 C C 50 1_555 -0.808 -1.471 3.182 1.729 4.771 35.646 -3.017 1.539 2.926 7.745 -2.807 35.994 8 CC_U1090G1091:C1100U1101_CC C 1090 ? C 1101 ? C 1091 ? C 1100 ? 1 C G 41 1_555 C C 50 1_555 C C 42 1_555 C G 49 1_555 -0.024 -2.312 3.184 0.134 2.438 29.161 -5.076 0.075 2.984 4.831 -0.266 29.260 9 CC_G1091C1092:G1099C1100_CC C 1091 ? C 1100 ? C 1092 ? C 1099 ? 1 C C 42 1_555 C G 49 1_555 C G 43 1_555 C A 48 1_555 -0.235 -1.285 3.512 2.276 5.012 59.455 -1.556 0.356 3.393 5.042 -2.290 59.686 10 CC_C1092G1093:A1098G1099_CC C 1092 ? C 1099 ? C 1093 ? C 1098 ? 1 C A 36 1_555 C U 32 1_555 C A 7 1_555 C U 31 1_555 -2.601 -2.575 0.742 78.607 -150.786 113.056 -1.029 1.438 1.215 -76.122 -39.684 174.515 11 CC_A1086A1057:U1081U1082_CC C 1086 ? C 1082 ? C 1057 ? C 1081 ? 1 C A 7 1_555 C U 31 1_555 C U 8 1_555 C A 30 1_555 -0.644 -2.099 3.531 -2.744 7.170 34.429 -4.556 0.646 3.086 11.930 4.566 35.249 12 CC_A1057U1058:A1080U1081_CC C 1057 ? C 1081 ? C 1058 ? C 1080 ? 1 C U 8 1_555 C A 30 1_555 C G 9 1_555 C C 29 1_555 -1.017 -1.756 3.114 3.393 6.573 28.474 -4.695 2.642 2.518 13.085 -6.755 29.400 13 CC_U1058G1059:C1079A1080_CC C 1058 ? C 1080 ? C 1059 ? C 1079 ? 1 C G 9 1_555 C C 29 1_555 C U 10 1_555 C A 38 1_555 2.880 -0.799 -1.653 -26.651 -168.644 -173.467 0.353 1.448 -1.670 84.329 -13.327 -179.473 14 CC_G1059U1060:A1088C1079_CC C 1059 ? C 1079 ? C 1060 ? C 1088 ? 1 C G 12 1_555 C C 26 1_555 C G 13 1_555 C C 25 1_555 -0.429 -1.765 3.516 -1.132 7.856 35.996 -3.883 0.522 3.088 12.526 1.804 36.833 15 CC_G1062G1063:C1075C1076_CC C 1062 ? C 1076 ? C 1063 ? C 1075 ? 1 C G 13 1_555 C C 25 1_555 C C 14 1_555 C G 24 1_555 0.878 -1.623 3.189 0.800 2.312 35.389 -2.990 -1.328 3.099 3.798 -1.315 35.470 16 CC_G1063C1064:G1074C1075_CC C 1063 ? C 1075 ? C 1064 ? C 1074 ? 1 C C 14 1_555 C G 24 1_555 C U 15 1_555 C A 23 1_555 0.331 -1.004 3.425 6.517 6.551 50.927 -1.610 0.077 3.297 7.547 -7.508 51.703 17 CC_C1064U1065:A1073G1074_CC C 1064 ? C 1074 ? C 1065 ? C 1073 ? #