HEADER OXIDOREDUCTASE 25-FEB-03 1OMO TITLE ALANINE DEHYDROGENASE DIMER W/BOUND NAD (ARCHAEAL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALANINE DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.4.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: MZ1; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PMHAF1 KEYWDS TWO-DOMAIN, BETA-SANDWICH-DIMER, ROSSMANN-FOLD NAD DOMAIN, HUMAN MU KEYWDS 2 CRYSTALLIN HOMOLOG, HUMAN THYROID-HORMONE-BINDER HOMOLOG, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR D.T.GALLAGHER,N.N.SMITH,M.J.HOLDEN,I.SCHROEDER,H.G.MONBOUQUETTE REVDAT 4 14-FEB-24 1OMO 1 REMARK LINK REVDAT 3 24-FEB-09 1OMO 1 VERSN REVDAT 2 05-APR-05 1OMO 1 JRNL REMARK REVDAT 1 06-JUL-04 1OMO 0 JRNL AUTH D.T.GALLAGHER,H.G.MONBOUQUETTE,I.SCHROEDER,H.ROBINSON, JRNL AUTH 2 M.J.HOLDEN,N.N.SMITH JRNL TITL STRUCTURE OF ALANINE DEHYDROGENASE FROM ARCHAEOGLOBUS: JRNL TITL 2 ACTIVE SITE ANALYSIS AND RELATION TO BACTERIAL JRNL TITL 3 CYCLODEAMINASES AND MAMMALIAN MU CRYSTALLIN. JRNL REF J.MOL.BIOL. V. 342 119 2004 JRNL REFN ISSN 0022-2836 JRNL PMID 15313611 JRNL DOI 10.1016/J.JMB.2004.06.090 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.SMITH,M.MAYHEW,H.ROBINSON,A.HEROUX,D.CHARLTON,M.J.HOLDEN, REMARK 1 AUTH 2 D.T.GALLAGHER REMARK 1 TITL CRYSTALLIZATION AND PHASING OF ALANINE DEHYDROGENASE FROM REMARK 1 TITL 2 ARCHAEOGLOBUS FULGIDUS. REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 2328 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 PMID 14646110 REMARK 1 DOI 10.1107/S0907444903021565 REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 29537 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : QUASIRANDOM THROUGHOUT 4% REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.262 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1189 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.32 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.60 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 185 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.023 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4852 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 90 REMARK 3 SOLVENT ATOMS : 338 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.28 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.39 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 1.890 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.650 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OMO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-APR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.088,1.1048,1.1051 REMARK 200 MONOCHROMATOR : SILICON CUT CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32447 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.65 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN 15 MG/ML, MPD (~20%), 100 MM REMARK 280 NACL, 10 MM TRIS, PH 4.9, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 54.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 27.75000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 54.35000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 27.75000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS THE BIOLOGICAL DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6130 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24100 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -62.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 714 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 321 REMARK 465 ILE A 322 REMARK 465 ARG B 321 REMARK 465 ILE B 322 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O ALA A 273 NH2 ARG B 29 1545 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 67 CB - CA - C ANGL. DEV. = -11.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 75 5.51 -56.10 REMARK 500 SER A 126 -24.91 -141.85 REMARK 500 ARG A 173 32.43 -98.27 REMARK 500 ASP A 219 11.73 -149.30 REMARK 500 LYS B 35 31.14 -97.97 REMARK 500 LYS B 48 30.10 -97.86 REMARK 500 PRO B 71 -31.90 -33.82 REMARK 500 ASP B 75 27.28 -71.20 REMARK 500 SER B 126 -19.25 -155.92 REMARK 500 VAL B 147 -63.91 -102.57 REMARK 500 ASP B 157 146.92 -173.70 REMARK 500 VAL B 158 47.61 -74.30 REMARK 500 ASP B 172 -36.11 -38.91 REMARK 500 GLN B 180 105.58 -167.80 REMARK 500 PRO B 181 159.79 -38.77 REMARK 500 ALA B 182 -71.83 -22.78 REMARK 500 PRO B 200 141.84 -30.83 REMARK 500 TRP B 206 -26.24 -37.27 REMARK 500 ALA B 218 100.93 -47.41 REMARK 500 VAL B 228 -35.80 -32.63 REMARK 500 ASP B 239 -71.02 -72.78 REMARK 500 GLU B 284 148.62 -39.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 900 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 218 N REMARK 620 2 GLU A 225 OE1 84.1 REMARK 620 3 GLU A 249 OE1 119.1 108.9 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 901 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA B 218 N REMARK 620 2 GLU B 225 OE1 91.9 REMARK 620 3 GLU B 249 OE1 123.0 104.9 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 900 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAD B 401 REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE MATCHES GENBANK ENTRY NP_070493 REMARK 999 AND TIGR SEQUENCE AF1665. REMARK 999 HOWEVER, ACCORDING TO THE AUTHOR, THE PROTEIN REMARK 999 NAME ASSIGNED FOR THE GENBANK ENTRY IS INCORRECT. REMARK 999 THE PROTEIN WAS ASSIGNED THE NAME ORNITHINE REMARK 999 CYCLODEAMINASE BASED ON SEQUENCE HOMOLOGY, BUT REMARK 999 THE AUTHORS STATE THE PROTEIN HAS BEEN SHOWN REMARK 999 TO BE AN ALANINE DEHYDROGENASE. REMARK 999 THE GENBANK REFERENCE IS NOT USED FOR THE REMARK 999 DBREF SINCE THE PROTEIN NAME IS INCORRECTLY REMARK 999 ASSIGNED. DBREF 1OMO A 1 322 UNP O28608 O28608_ARCFU 1 322 DBREF 1OMO B 1 322 UNP O28608 O28608_ARCFU 1 322 SEQRES 1 A 322 MET GLU THR LEU ILE LEU THR GLN GLU GLU VAL GLU SER SEQRES 2 A 322 LEU ILE SER MET ASP GLU ALA MET ASN ALA VAL GLU GLU SEQRES 3 A 322 ALA PHE ARG LEU TYR ALA LEU GLY LYS ALA GLN MET PRO SEQRES 4 A 322 PRO LYS VAL TYR LEU GLU PHE GLU LYS GLY ASP LEU ARG SEQRES 5 A 322 ALA MET PRO ALA HIS LEU MET GLY TYR ALA GLY LEU LYS SEQRES 6 A 322 TRP VAL ASN SER HIS PRO GLY ASN PRO ASP LYS GLY LEU SEQRES 7 A 322 PRO THR VAL MET ALA LEU MET ILE LEU ASN SER PRO GLU SEQRES 8 A 322 THR GLY PHE PRO LEU ALA VAL MET ASP ALA THR TYR THR SEQRES 9 A 322 THR SER LEU ARG THR GLY ALA ALA GLY GLY ILE ALA ALA SEQRES 10 A 322 LYS TYR LEU ALA ARG LYS ASN SER SER VAL PHE GLY PHE SEQRES 11 A 322 ILE GLY CYS GLY THR GLN ALA TYR PHE GLN LEU GLU ALA SEQRES 12 A 322 LEU ARG ARG VAL PHE ASP ILE GLY GLU VAL LYS ALA TYR SEQRES 13 A 322 ASP VAL ARG GLU LYS ALA ALA LYS LYS PHE VAL SER TYR SEQRES 14 A 322 CYS GLU ASP ARG GLY ILE SER ALA SER VAL GLN PRO ALA SEQRES 15 A 322 GLU GLU ALA SER ARG CYS ASP VAL LEU VAL THR THR THR SEQRES 16 A 322 PRO SER ARG LYS PRO VAL VAL LYS ALA GLU TRP VAL GLU SEQRES 17 A 322 GLU GLY THR HIS ILE ASN ALA ILE GLY ALA ASP GLY PRO SEQRES 18 A 322 GLY LYS GLN GLU LEU ASP VAL GLU ILE LEU LYS LYS ALA SEQRES 19 A 322 LYS ILE VAL VAL ASP ASP LEU GLU GLN ALA LYS HIS GLY SEQRES 20 A 322 GLY GLU ILE ASN VAL ALA VAL SER LYS GLY VAL ILE GLY SEQRES 21 A 322 VAL GLU ASP VAL HIS ALA THR ILE GLY GLU VAL ILE ALA SEQRES 22 A 322 GLY LEU LYS ASP GLY ARG GLU SER ASP GLU GLU ILE THR SEQRES 23 A 322 ILE PHE ASP SER THR GLY LEU ALA ILE GLN ASP VAL ALA SEQRES 24 A 322 VAL ALA LYS VAL VAL TYR GLU ASN ALA LEU SER LYS ASN SEQRES 25 A 322 VAL GLY SER LYS ILE LYS PHE PHE ARG ILE SEQRES 1 B 322 MET GLU THR LEU ILE LEU THR GLN GLU GLU VAL GLU SER SEQRES 2 B 322 LEU ILE SER MET ASP GLU ALA MET ASN ALA VAL GLU GLU SEQRES 3 B 322 ALA PHE ARG LEU TYR ALA LEU GLY LYS ALA GLN MET PRO SEQRES 4 B 322 PRO LYS VAL TYR LEU GLU PHE GLU LYS GLY ASP LEU ARG SEQRES 5 B 322 ALA MET PRO ALA HIS LEU MET GLY TYR ALA GLY LEU LYS SEQRES 6 B 322 TRP VAL ASN SER HIS PRO GLY ASN PRO ASP LYS GLY LEU SEQRES 7 B 322 PRO THR VAL MET ALA LEU MET ILE LEU ASN SER PRO GLU SEQRES 8 B 322 THR GLY PHE PRO LEU ALA VAL MET ASP ALA THR TYR THR SEQRES 9 B 322 THR SER LEU ARG THR GLY ALA ALA GLY GLY ILE ALA ALA SEQRES 10 B 322 LYS TYR LEU ALA ARG LYS ASN SER SER VAL PHE GLY PHE SEQRES 11 B 322 ILE GLY CYS GLY THR GLN ALA TYR PHE GLN LEU GLU ALA SEQRES 12 B 322 LEU ARG ARG VAL PHE ASP ILE GLY GLU VAL LYS ALA TYR SEQRES 13 B 322 ASP VAL ARG GLU LYS ALA ALA LYS LYS PHE VAL SER TYR SEQRES 14 B 322 CYS GLU ASP ARG GLY ILE SER ALA SER VAL GLN PRO ALA SEQRES 15 B 322 GLU GLU ALA SER ARG CYS ASP VAL LEU VAL THR THR THR SEQRES 16 B 322 PRO SER ARG LYS PRO VAL VAL LYS ALA GLU TRP VAL GLU SEQRES 17 B 322 GLU GLY THR HIS ILE ASN ALA ILE GLY ALA ASP GLY PRO SEQRES 18 B 322 GLY LYS GLN GLU LEU ASP VAL GLU ILE LEU LYS LYS ALA SEQRES 19 B 322 LYS ILE VAL VAL ASP ASP LEU GLU GLN ALA LYS HIS GLY SEQRES 20 B 322 GLY GLU ILE ASN VAL ALA VAL SER LYS GLY VAL ILE GLY SEQRES 21 B 322 VAL GLU ASP VAL HIS ALA THR ILE GLY GLU VAL ILE ALA SEQRES 22 B 322 GLY LEU LYS ASP GLY ARG GLU SER ASP GLU GLU ILE THR SEQRES 23 B 322 ILE PHE ASP SER THR GLY LEU ALA ILE GLN ASP VAL ALA SEQRES 24 B 322 VAL ALA LYS VAL VAL TYR GLU ASN ALA LEU SER LYS ASN SEQRES 25 B 322 VAL GLY SER LYS ILE LYS PHE PHE ARG ILE HET NA A 900 1 HET NAD A 400 44 HET NA B 901 1 HET NAD B 401 44 HETNAM NA SODIUM ION HETNAM NAD NICOTINAMIDE-ADENINE-DINUCLEOTIDE FORMUL 3 NA 2(NA 1+) FORMUL 4 NAD 2(C21 H27 N7 O14 P2) FORMUL 7 HOH *338(H2 O) HELIX 1 1 THR A 7 SER A 13 1 7 HELIX 2 2 SER A 16 LEU A 33 1 18 HELIX 3 3 ASN A 73 GLY A 77 5 5 HELIX 4 4 ALA A 101 ALA A 121 1 21 HELIX 5 5 GLY A 134 PHE A 148 1 15 HELIX 6 6 ARG A 159 ARG A 173 1 15 HELIX 7 7 PRO A 181 SER A 186 1 6 HELIX 8 8 LYS A 203 VAL A 207 5 5 HELIX 9 9 ASP A 227 LYS A 233 1 7 HELIX 10 10 ASP A 240 GLY A 248 1 9 HELIX 11 11 ILE A 250 LYS A 256 1 7 HELIX 12 12 ILE A 268 ALA A 273 1 6 HELIX 13 13 LEU A 293 ASN A 312 1 20 HELIX 14 14 THR B 7 SER B 13 1 7 HELIX 15 15 SER B 16 LEU B 33 1 18 HELIX 16 16 ASN B 73 GLY B 77 5 5 HELIX 17 17 ALA B 101 ALA B 121 1 21 HELIX 18 18 GLY B 134 PHE B 148 1 15 HELIX 19 19 GLU B 160 ARG B 173 1 14 HELIX 20 20 PRO B 181 SER B 186 1 6 HELIX 21 21 ASP B 227 LYS B 233 1 7 HELIX 22 22 ASP B 240 GLY B 248 1 9 HELIX 23 23 ILE B 250 LYS B 256 1 7 HELIX 24 24 GLY B 260 VAL B 264 5 5 HELIX 25 25 ILE B 268 ALA B 273 1 6 HELIX 26 26 LEU B 293 ASN B 312 1 20 SHEET 1 A 7 VAL A 42 GLU A 45 0 SHEET 2 A 7 ASP A 50 LEU A 58 -1 O LEU A 51 N LEU A 44 SHEET 3 A 7 TYR A 61 SER A 69 -1 O LYS A 65 N MET A 54 SHEET 4 A 7 ALA A 83 ASN A 88 -1 O ASN A 88 N ALA A 62 SHEET 5 A 7 PRO A 95 ASP A 100 -1 O ALA A 97 N LEU A 87 SHEET 6 A 7 THR A 3 LEU A 6 1 N LEU A 4 O LEU A 96 SHEET 7 A 7 SER A 315 ILE A 317 -1 O ILE A 317 N THR A 3 SHEET 1 B 8 ALA A 177 VAL A 179 0 SHEET 2 B 8 GLU A 152 TYR A 156 1 N ALA A 155 O SER A 178 SHEET 3 B 8 VAL A 127 ILE A 131 1 N PHE A 128 O GLU A 152 SHEET 4 B 8 VAL A 190 THR A 193 1 O VAL A 192 N GLY A 129 SHEET 5 B 8 HIS A 212 ALA A 215 1 O ASN A 214 N LEU A 191 SHEET 6 B 8 ILE A 285 ASP A 289 1 O THR A 286 N ILE A 213 SHEET 7 B 8 ALA A 234 VAL A 238 1 N VAL A 237 O ILE A 287 SHEET 8 B 8 VAL A 264 THR A 267 1 O ALA A 266 N VAL A 238 SHEET 1 C 7 VAL B 42 PHE B 46 0 SHEET 2 C 7 GLY B 49 LEU B 58 -1 O GLY B 49 N PHE B 46 SHEET 3 C 7 TYR B 61 SER B 69 -1 O VAL B 67 N ARG B 52 SHEET 4 C 7 ALA B 83 ASN B 88 -1 O ASN B 88 N ALA B 62 SHEET 5 C 7 PRO B 95 ASP B 100 -1 O ALA B 97 N LEU B 87 SHEET 6 C 7 THR B 3 LEU B 6 1 N LEU B 4 O LEU B 96 SHEET 7 C 7 SER B 315 ILE B 317 -1 O SER B 315 N ILE B 5 SHEET 1 D 8 SER B 176 VAL B 179 0 SHEET 2 D 8 GLU B 152 TYR B 156 1 N ALA B 155 O SER B 178 SHEET 3 D 8 VAL B 127 ILE B 131 1 N PHE B 128 O LYS B 154 SHEET 4 D 8 VAL B 190 THR B 193 1 O VAL B 192 N GLY B 129 SHEET 5 D 8 HIS B 212 ALA B 215 1 O ASN B 214 N LEU B 191 SHEET 6 D 8 ILE B 285 ASP B 289 1 O THR B 286 N ILE B 213 SHEET 7 D 8 ALA B 234 VAL B 238 1 N LYS B 235 O ILE B 285 SHEET 8 D 8 ALA B 266 THR B 267 1 O ALA B 266 N VAL B 238 LINK N ALA A 218 NA NA A 900 1555 1555 2.93 LINK OE1 GLU A 225 NA NA A 900 1555 1555 2.42 LINK OE1 GLU A 249 NA NA A 900 1555 1555 2.76 LINK N ALA B 218 NA NA B 901 1555 1555 2.77 LINK OE1 GLU B 225 NA NA B 901 1555 1555 2.47 LINK OE1 GLU B 249 NA NA B 901 1555 1555 2.71 SITE 1 AC1 4 GLY A 217 ALA A 218 GLU A 225 GLU A 249 SITE 1 AC2 5 ALA B 215 GLY B 217 ALA B 218 GLU B 225 SITE 2 AC2 5 GLU B 249 SITE 1 AC3 21 ARG A 108 THR A 109 GLY A 134 THR A 135 SITE 2 AC3 21 GLN A 136 TYR A 156 ASP A 157 VAL A 158 SITE 3 AC3 21 ARG A 159 THR A 195 PRO A 196 VAL A 201 SITE 4 AC3 21 ILE A 216 GLY A 217 ASP A 219 LYS A 223 SITE 5 AC3 21 SER A 290 THR A 291 GLY A 292 HOH A 579 SITE 6 AC3 21 HOH A 658 SITE 1 AC4 25 ARG B 108 THR B 109 GLY B 132 GLY B 134 SITE 2 AC4 25 THR B 135 GLN B 136 TYR B 156 ASP B 157 SITE 3 AC4 25 VAL B 158 ARG B 159 THR B 194 THR B 195 SITE 4 AC4 25 PRO B 196 VAL B 201 ILE B 216 GLY B 217 SITE 5 AC4 25 ASP B 219 LYS B 223 SER B 290 THR B 291 SITE 6 AC4 25 GLY B 292 HOH B 670 HOH B 684 HOH B 692 SITE 7 AC4 25 HOH B 760 CRYST1 108.700 55.500 131.300 90.00 111.10 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009200 0.000000 0.003550 0.00000 SCALE2 0.000000 0.018018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008163 0.00000