HEADER DNA BINDING PROTEIN 26-FEB-03 1OMQ TITLE STRUCTURE OF PENETRATIN IN BICELLAR SOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: HOMEOTIC ANTENNAPEDIA PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL FRAGMENT; COMPND 5 SYNONYM: PENETRATIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 OF THE PEPTIDE IS NATURALLY FOUND IN DROSOPHILA MELANOGASTER (FRUIT SOURCE 5 FLY). THE PEPTIDE WAS OBTAINED FROM NEOSYSTEM INC. AND USED WITHOUT SOURCE 6 FURTHER PURIFICATION. KEYWDS UNSTRUCTURED AT THE TERMINALS, ALPHA HELICAL IN THE MIDDLE, DNA KEYWDS 2 BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.LINDBERG,H.BIVERSTAHL,A.GRASLUND,L.MALER REVDAT 4 22-MAY-24 1OMQ 1 REMARK REVDAT 3 23-FEB-22 1OMQ 1 REMARK REVDAT 2 24-FEB-09 1OMQ 1 VERSN REVDAT 1 29-JUL-03 1OMQ 0 JRNL AUTH M.LINDBERG,H.BIVERSTAHL,A.GRASLUND,L.MALER JRNL TITL STRUCTURE AND POSITIONING COMPARISON OF TWO VARIANTS OF JRNL TITL 2 PENETRATIN IN TWO DIFFERENT MEMBRANE MIMICKING SYSTEMS BY JRNL TITL 3 NMR JRNL REF EUR.J.BIOCHEM. V. 270 3055 2003 JRNL REFN ISSN 0014-2956 JRNL PMID 12846839 JRNL DOI 10.1046/J.1432-1033.2003.03685.X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1C, DYANA 1.5 REMARK 3 AUTHORS : GUNTERT, MUMENTHALER, HERRMANN (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: A TOTAL OF 129 DISTANCE CONSTRAINTS REMARK 3 WHERE IDENTIFIED, MOSTLY SEQUENTIAL AND MEDIUM RANGE NOES (40 REMARK 3 INTRA-RESIDUE, 54 SEQUENTIAL AND 35 MEDIUM RANGE NOES) REMARK 4 REMARK 4 1OMQ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018449. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : 50MM KCL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 3MM PENETRATIN, 50 MM KCL; 15% REMARK 210 W/V (DMPC+DMPG)/DHPC BICELLAR REMARK 210 SOLUTION WITH Q=0.5 AND 5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 2000.1, DYANA 1.5 REMARK 210 METHOD USED : DISTANCE GEOMETRY REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 60 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE WAS DETERMINED BY STANDARD 2D HOMONUCLEAR REMARK 210 TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 47 HD21 ASN A 51 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 57 107.81 -40.69 REMARK 500 2 GLN A 44 24.42 -149.94 REMARK 500 3 TRP A 56 71.74 -104.31 REMARK 500 4 ARG A 53 68.36 -115.00 REMARK 500 4 MET A 54 -26.36 161.05 REMARK 500 4 TRP A 56 66.43 -114.59 REMARK 500 5 GLN A 44 37.27 39.26 REMARK 500 5 MET A 54 58.23 38.71 REMARK 500 8 ARG A 53 57.63 -92.11 REMARK 500 8 MET A 54 -26.27 161.00 REMARK 500 9 GLN A 44 34.01 -96.74 REMARK 500 10 LYS A 57 109.95 -46.37 REMARK 500 11 GLN A 44 -34.05 174.59 REMARK 500 11 LYS A 55 56.12 -119.54 REMARK 500 11 TRP A 56 -47.13 -162.43 REMARK 500 12 GLN A 44 19.28 -148.22 REMARK 500 12 MET A 54 -44.59 -144.09 REMARK 500 12 LYS A 57 -162.39 47.61 REMARK 500 13 GLN A 44 20.78 -150.45 REMARK 500 13 LYS A 55 -45.84 -157.05 REMARK 500 14 GLN A 44 19.77 -147.06 REMARK 500 14 TRP A 56 -49.01 -133.00 REMARK 500 15 GLN A 44 28.40 -156.40 REMARK 500 15 ARG A 53 63.92 -105.84 REMARK 500 15 MET A 54 -28.82 165.47 REMARK 500 15 LYS A 57 -179.83 179.54 REMARK 500 16 LYS A 57 -75.79 70.60 REMARK 500 17 GLN A 44 29.30 39.90 REMARK 500 17 LYS A 57 119.29 64.37 REMARK 500 18 LYS A 57 170.20 64.98 REMARK 500 19 GLN A 44 -149.65 -147.62 REMARK 500 19 ILE A 45 31.38 39.95 REMARK 500 19 LYS A 46 -39.10 -164.04 REMARK 500 20 GLN A 44 -13.66 86.42 REMARK 500 REMARK 500 REMARK: NULL DBREF 1OMQ A 43 58 UNP P02833 ANTP_DROME 339 354 SEQRES 1 A 16 ARG GLN ILE LYS ILE TRP PHE GLN ASN ARG ARG MET LYS SEQRES 2 A 16 TRP LYS LYS HELIX 1 1 TRP A 48 LYS A 57 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1