data_1ON5 # _entry.id 1ON5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ON5 pdb_00001on5 10.2210/pdb1on5/pdb RCSB RCSB018462 ? ? WWPDB D_1000018462 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-08-05 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 5 'Structure model' 1 4 2024-05-22 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_struct_assembly 3 4 'Structure model' pdbx_struct_oper_list 4 4 'Structure model' struct_conn 5 4 'Structure model' struct_site 6 5 'Structure model' chem_comp_atom 7 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_dist_value' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 6 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 7 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 8 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 9 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 10 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 11 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 13 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 14 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 15 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 16 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ON5 _pdbx_database_status.recvd_initial_deposition_date 2003-02-27 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tuma, J.' 1 'Richert, C.' 2 # _citation.id primary _citation.title 'Solution Structure of a Steroid-DNA Complex with Cholic Acid Residues Sealing the Termini of a Watson-Crick Duplex' _citation.journal_abbrev Biochemistry _citation.journal_volume 42 _citation.page_first 8957 _citation.page_last 8965 _citation.year 2003 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12885228 _citation.pdbx_database_id_DOI 10.1021/bi030056g # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tuma, J.' 1 ? primary 'Richert, C.' 2 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'Steroid-DNA hybrid' 1728.254 2 ? ? ? ? 2 non-polymer syn 'CHOLIC ACID' 408.571 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(5AT)(DG)(DC)(DG)(DC)(DA)' _entity_poly.pdbx_seq_one_letter_code_can TGCGCA _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'CHOLIC ACID' _pdbx_entity_nonpoly.comp_id CHD # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 5AT n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DC n 1 6 DA n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Synthesis of the DNA fragment by the authors.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 5AT 'DNA linking' n "5'-AMINO-5'-DEOXYTHYMIDINE" ? 'C10 H15 N3 O4' 241.244 CHD non-polymer . 'CHOLIC ACID' ? 'C24 H40 O5' 408.571 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 5AT 1 2 2 5AT 5AT A . n A 1 2 DG 2 3 3 DG G A . n A 1 3 DC 3 4 4 DC C A . n A 1 4 DG 4 5 5 DG G A . n A 1 5 DC 5 6 6 DC C A . n A 1 6 DA 6 7 7 DA A A . n B 1 1 5AT 1 2 2 5AT 5AT B . n B 1 2 DG 2 3 3 DG G B . n B 1 3 DC 3 4 4 DC C B . n B 1 4 DG 4 5 5 DG G B . n B 1 5 DC 5 6 6 DC C B . n B 1 6 DA 6 7 7 DA A B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CHD 1 1 1 CHD CHD A . D 2 CHD 1 1 1 CHD CHD B . # _exptl.entry_id 1ON5 _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews ? _exptl_crystal.density_percent_sol ? _exptl_crystal.description ? # _diffrn.id 1 _diffrn.ambient_temp ? _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type ? # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength . _diffrn_radiation_wavelength.wt 1.0 # _database_PDB_matrix.entry_id 1ON5 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1ON5 _struct.title 'SOLUTION STRUCTURE OF A CHOLIC ACID-CAPPED DNA DUPLEX' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ON5 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA, steroid, synthetic hybrid' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1ON5 _struct_ref.pdbx_db_accession 1ON5 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1ON5 A 1 ? 6 ? 1ON5 2 ? 7 ? 2 7 2 1 1ON5 B 1 ? 6 ? 1ON5 2 ? 7 ? 2 7 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale none ? C CHD . C24 ? ? ? 1_555 A 5AT 1 "N5'" ? ? A CHD 1 A 5AT 2 1_555 ? ? ? ? ? ? ? 1.460 ? ? covale2 covale both ? A 5AT 1 "O3'" ? ? ? 1_555 A DG 2 P ? ? A 5AT 2 A DG 3 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale3 covale none ? D CHD . C24 ? ? ? 1_555 B 5AT 1 "N5'" ? ? B CHD 1 B 5AT 2 1_555 ? ? ? ? ? ? ? 1.460 ? ? covale4 covale both ? B 5AT 1 "O3'" ? ? ? 1_555 B DG 2 P ? ? B 5AT 2 B DG 3 1_555 ? ? ? ? ? ? ? 1.610 ? ? hydrog1 hydrog ? ? A 5AT 1 N3 ? ? ? 1_555 B DA 6 N1 ? ? A 5AT 2 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A 5AT 1 O4 ? ? ? 1_555 B DA 6 N6 ? ? A 5AT 2 B DA 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 5 N3 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 5 O2 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 5 N4 ? ? A DG 3 B DC 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 4 B DG 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 5 B DC 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 6 B DG 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B 5AT 1 N3 ? ? A DA 7 B 5AT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B 5AT 1 O4 ? ? A DA 7 B 5AT 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A CHD 1 ? 2 'BINDING SITE FOR RESIDUE CHD A 1' AC2 Software B CHD 1 ? 2 'BINDING SITE FOR RESIDUE CHD B 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 2 5AT A 1 ? 5AT A 2 . ? 1_555 ? 2 AC1 2 DA B 6 ? DA B 7 . ? 1_555 ? 3 AC2 2 DA A 6 ? DA A 7 . ? 1_555 ? 4 AC2 2 5AT B 1 ? 5AT B 2 . ? 1_555 ? # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 5AT 1 A 5AT 2 ? DT "5'-AMINO-5'-DEOXYTHYMIDINE" 2 B 5AT 1 B 5AT 2 ? DT "5'-AMINO-5'-DEOXYTHYMIDINE" # _pdbx_nmr_ensemble.entry_id 1ON5 _pdbx_nmr_ensemble.conformers_calculated_total_number ? _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_representative.entry_id 1ON5 _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 'analyte buffer, salt' D2O 2 'analyte buffer, salt' 'H2O/D2O(85:15)' # loop_ _pdbx_nmr_exptl_sample.solution_id _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling 1 'analyte buffer, salt, D2O' ? % ? 2 'analyte buffer, salt, H2O/D2O(85:15)' ? % ? # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature_units 1 286 ambient 7 '165mM Phosphate buffer (KH2PO4/K2HPO4), NaCl at pH 7 (uncorrected for deuterium effect)' ? K 2 286 ambient 7 '165mM Phosphate buffer (KH2PO4/K2HPO4), NaCl at pH 7 (uncorrected for deuterium effect)' ? K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type 1 1 1 '2D NOESY, DQF-COSY, TOCSY, HMQC, HMBC' 2 2 2 '2D NOESY' # _pdbx_nmr_refine.entry_id 1ON5 _pdbx_nmr_refine.method 'Torsion-Angle Molecular Dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.classification _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal CNS 1.0 'structure solution' Brunger 1 CNS 1.0 refinement Brunger 2 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 5AT "N5'" N N N 1 5AT N1 N N N 2 5AT C6 C N N 3 5AT C2 C N N 4 5AT O2 O N N 5 5AT N3 N N N 6 5AT C4 C N N 7 5AT O4 O N N 8 5AT C5 C N N 9 5AT C7 C N N 10 5AT "C2'" C N N 11 5AT "C5'" C N N 12 5AT "C4'" C N R 13 5AT "O4'" O N N 14 5AT "C1'" C N R 15 5AT "C3'" C N S 16 5AT "O3'" O N N 17 5AT HN51 H N N 18 5AT HN52 H N N 19 5AT H6 H N N 20 5AT H3 H N N 21 5AT H71 H N N 22 5AT H72 H N N 23 5AT H73 H N N 24 5AT "H2'" H N N 25 5AT "H2''" H N N 26 5AT "H5'" H N N 27 5AT "H5''" H N N 28 5AT "H4'" H N N 29 5AT "H1'" H N N 30 5AT "H3'" H N N 31 5AT "HO3'" H N N 32 CHD C1 C N N 33 CHD C2 C N N 34 CHD C3 C N R 35 CHD O3 O N N 36 CHD C4 C N N 37 CHD C5 C N S 38 CHD C6 C N N 39 CHD C7 C N R 40 CHD O7 O N N 41 CHD C8 C N R 42 CHD C9 C N S 43 CHD C10 C N S 44 CHD C11 C N N 45 CHD C12 C N S 46 CHD O12 O N N 47 CHD C13 C N R 48 CHD C14 C N S 49 CHD C15 C N N 50 CHD C16 C N N 51 CHD C17 C N R 52 CHD C18 C N N 53 CHD C19 C N N 54 CHD C20 C N R 55 CHD C21 C N N 56 CHD C22 C N N 57 CHD C23 C N N 58 CHD O25 O N N 59 CHD C24 C N N 60 CHD O26 O N N 61 CHD H11 H N N 62 CHD H12A H N N 63 CHD H21 H N N 64 CHD H22 H N N 65 CHD H3 H N N 66 CHD HO3 H N N 67 CHD H41 H N N 68 CHD H42 H N N 69 CHD H5 H N N 70 CHD H61 H N N 71 CHD H62 H N N 72 CHD H7 H N N 73 CHD HO7 H N N 74 CHD H8 H N N 75 CHD H9 H N N 76 CHD H111 H N N 77 CHD H112 H N N 78 CHD H12 H N N 79 CHD HO12 H N N 80 CHD H14 H N N 81 CHD H151 H N N 82 CHD H152 H N N 83 CHD H161 H N N 84 CHD H162 H N N 85 CHD H17 H N N 86 CHD H181 H N N 87 CHD H182 H N N 88 CHD H183 H N N 89 CHD H191 H N N 90 CHD H192 H N N 91 CHD H193 H N N 92 CHD H20 H N N 93 CHD H211 H N N 94 CHD H212 H N N 95 CHD H213 H N N 96 CHD H221 H N N 97 CHD H222 H N N 98 CHD H231 H N N 99 CHD H232 H N N 100 CHD H26 H N N 101 DA OP3 O N N 102 DA P P N N 103 DA OP1 O N N 104 DA OP2 O N N 105 DA "O5'" O N N 106 DA "C5'" C N N 107 DA "C4'" C N R 108 DA "O4'" O N N 109 DA "C3'" C N S 110 DA "O3'" O N N 111 DA "C2'" C N N 112 DA "C1'" C N R 113 DA N9 N Y N 114 DA C8 C Y N 115 DA N7 N Y N 116 DA C5 C Y N 117 DA C6 C Y N 118 DA N6 N N N 119 DA N1 N Y N 120 DA C2 C Y N 121 DA N3 N Y N 122 DA C4 C Y N 123 DA HOP3 H N N 124 DA HOP2 H N N 125 DA "H5'" H N N 126 DA "H5''" H N N 127 DA "H4'" H N N 128 DA "H3'" H N N 129 DA "HO3'" H N N 130 DA "H2'" H N N 131 DA "H2''" H N N 132 DA "H1'" H N N 133 DA H8 H N N 134 DA H61 H N N 135 DA H62 H N N 136 DA H2 H N N 137 DC OP3 O N N 138 DC P P N N 139 DC OP1 O N N 140 DC OP2 O N N 141 DC "O5'" O N N 142 DC "C5'" C N N 143 DC "C4'" C N R 144 DC "O4'" O N N 145 DC "C3'" C N S 146 DC "O3'" O N N 147 DC "C2'" C N N 148 DC "C1'" C N R 149 DC N1 N N N 150 DC C2 C N N 151 DC O2 O N N 152 DC N3 N N N 153 DC C4 C N N 154 DC N4 N N N 155 DC C5 C N N 156 DC C6 C N N 157 DC HOP3 H N N 158 DC HOP2 H N N 159 DC "H5'" H N N 160 DC "H5''" H N N 161 DC "H4'" H N N 162 DC "H3'" H N N 163 DC "HO3'" H N N 164 DC "H2'" H N N 165 DC "H2''" H N N 166 DC "H1'" H N N 167 DC H41 H N N 168 DC H42 H N N 169 DC H5 H N N 170 DC H6 H N N 171 DG OP3 O N N 172 DG P P N N 173 DG OP1 O N N 174 DG OP2 O N N 175 DG "O5'" O N N 176 DG "C5'" C N N 177 DG "C4'" C N R 178 DG "O4'" O N N 179 DG "C3'" C N S 180 DG "O3'" O N N 181 DG "C2'" C N N 182 DG "C1'" C N R 183 DG N9 N Y N 184 DG C8 C Y N 185 DG N7 N Y N 186 DG C5 C Y N 187 DG C6 C N N 188 DG O6 O N N 189 DG N1 N N N 190 DG C2 C N N 191 DG N2 N N N 192 DG N3 N N N 193 DG C4 C Y N 194 DG HOP3 H N N 195 DG HOP2 H N N 196 DG "H5'" H N N 197 DG "H5''" H N N 198 DG "H4'" H N N 199 DG "H3'" H N N 200 DG "HO3'" H N N 201 DG "H2'" H N N 202 DG "H2''" H N N 203 DG "H1'" H N N 204 DG H8 H N N 205 DG H1 H N N 206 DG H21 H N N 207 DG H22 H N N 208 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 5AT "N5'" "C5'" sing N N 1 5AT "N5'" HN51 sing N N 2 5AT "N5'" HN52 sing N N 3 5AT N1 C6 sing N N 4 5AT N1 C2 sing N N 5 5AT N1 "C1'" sing N N 6 5AT C6 C5 doub N N 7 5AT C6 H6 sing N N 8 5AT C2 O2 doub N N 9 5AT C2 N3 sing N N 10 5AT N3 C4 sing N N 11 5AT N3 H3 sing N N 12 5AT C4 O4 doub N N 13 5AT C4 C5 sing N N 14 5AT C5 C7 sing N N 15 5AT C7 H71 sing N N 16 5AT C7 H72 sing N N 17 5AT C7 H73 sing N N 18 5AT "C2'" "C1'" sing N N 19 5AT "C2'" "C3'" sing N N 20 5AT "C2'" "H2'" sing N N 21 5AT "C2'" "H2''" sing N N 22 5AT "C5'" "C4'" sing N N 23 5AT "C5'" "H5'" sing N N 24 5AT "C5'" "H5''" sing N N 25 5AT "C4'" "O4'" sing N N 26 5AT "C4'" "C3'" sing N N 27 5AT "C4'" "H4'" sing N N 28 5AT "O4'" "C1'" sing N N 29 5AT "C1'" "H1'" sing N N 30 5AT "C3'" "O3'" sing N N 31 5AT "C3'" "H3'" sing N N 32 5AT "O3'" "HO3'" sing N N 33 CHD C1 C2 sing N N 34 CHD C1 C10 sing N N 35 CHD C1 H11 sing N N 36 CHD C1 H12A sing N N 37 CHD C2 C3 sing N N 38 CHD C2 H21 sing N N 39 CHD C2 H22 sing N N 40 CHD C3 O3 sing N N 41 CHD C3 C4 sing N N 42 CHD C3 H3 sing N N 43 CHD O3 HO3 sing N N 44 CHD C4 C5 sing N N 45 CHD C4 H41 sing N N 46 CHD C4 H42 sing N N 47 CHD C5 C6 sing N N 48 CHD C5 C10 sing N N 49 CHD C5 H5 sing N N 50 CHD C6 C7 sing N N 51 CHD C6 H61 sing N N 52 CHD C6 H62 sing N N 53 CHD C7 O7 sing N N 54 CHD C7 C8 sing N N 55 CHD C7 H7 sing N N 56 CHD O7 HO7 sing N N 57 CHD C8 C9 sing N N 58 CHD C8 C14 sing N N 59 CHD C8 H8 sing N N 60 CHD C9 C10 sing N N 61 CHD C9 C11 sing N N 62 CHD C9 H9 sing N N 63 CHD C10 C19 sing N N 64 CHD C11 C12 sing N N 65 CHD C11 H111 sing N N 66 CHD C11 H112 sing N N 67 CHD C12 O12 sing N N 68 CHD C12 C13 sing N N 69 CHD C12 H12 sing N N 70 CHD O12 HO12 sing N N 71 CHD C13 C14 sing N N 72 CHD C13 C17 sing N N 73 CHD C13 C18 sing N N 74 CHD C14 C15 sing N N 75 CHD C14 H14 sing N N 76 CHD C15 C16 sing N N 77 CHD C15 H151 sing N N 78 CHD C15 H152 sing N N 79 CHD C16 C17 sing N N 80 CHD C16 H161 sing N N 81 CHD C16 H162 sing N N 82 CHD C17 C20 sing N N 83 CHD C17 H17 sing N N 84 CHD C18 H181 sing N N 85 CHD C18 H182 sing N N 86 CHD C18 H183 sing N N 87 CHD C19 H191 sing N N 88 CHD C19 H192 sing N N 89 CHD C19 H193 sing N N 90 CHD C20 C21 sing N N 91 CHD C20 C22 sing N N 92 CHD C20 H20 sing N N 93 CHD C21 H211 sing N N 94 CHD C21 H212 sing N N 95 CHD C21 H213 sing N N 96 CHD C22 C23 sing N N 97 CHD C22 H221 sing N N 98 CHD C22 H222 sing N N 99 CHD C23 C24 sing N N 100 CHD C23 H231 sing N N 101 CHD C23 H232 sing N N 102 CHD O25 C24 doub N N 103 CHD C24 O26 sing N N 104 CHD O26 H26 sing N N 105 DA OP3 P sing N N 106 DA OP3 HOP3 sing N N 107 DA P OP1 doub N N 108 DA P OP2 sing N N 109 DA P "O5'" sing N N 110 DA OP2 HOP2 sing N N 111 DA "O5'" "C5'" sing N N 112 DA "C5'" "C4'" sing N N 113 DA "C5'" "H5'" sing N N 114 DA "C5'" "H5''" sing N N 115 DA "C4'" "O4'" sing N N 116 DA "C4'" "C3'" sing N N 117 DA "C4'" "H4'" sing N N 118 DA "O4'" "C1'" sing N N 119 DA "C3'" "O3'" sing N N 120 DA "C3'" "C2'" sing N N 121 DA "C3'" "H3'" sing N N 122 DA "O3'" "HO3'" sing N N 123 DA "C2'" "C1'" sing N N 124 DA "C2'" "H2'" sing N N 125 DA "C2'" "H2''" sing N N 126 DA "C1'" N9 sing N N 127 DA "C1'" "H1'" sing N N 128 DA N9 C8 sing Y N 129 DA N9 C4 sing Y N 130 DA C8 N7 doub Y N 131 DA C8 H8 sing N N 132 DA N7 C5 sing Y N 133 DA C5 C6 sing Y N 134 DA C5 C4 doub Y N 135 DA C6 N6 sing N N 136 DA C6 N1 doub Y N 137 DA N6 H61 sing N N 138 DA N6 H62 sing N N 139 DA N1 C2 sing Y N 140 DA C2 N3 doub Y N 141 DA C2 H2 sing N N 142 DA N3 C4 sing Y N 143 DC OP3 P sing N N 144 DC OP3 HOP3 sing N N 145 DC P OP1 doub N N 146 DC P OP2 sing N N 147 DC P "O5'" sing N N 148 DC OP2 HOP2 sing N N 149 DC "O5'" "C5'" sing N N 150 DC "C5'" "C4'" sing N N 151 DC "C5'" "H5'" sing N N 152 DC "C5'" "H5''" sing N N 153 DC "C4'" "O4'" sing N N 154 DC "C4'" "C3'" sing N N 155 DC "C4'" "H4'" sing N N 156 DC "O4'" "C1'" sing N N 157 DC "C3'" "O3'" sing N N 158 DC "C3'" "C2'" sing N N 159 DC "C3'" "H3'" sing N N 160 DC "O3'" "HO3'" sing N N 161 DC "C2'" "C1'" sing N N 162 DC "C2'" "H2'" sing N N 163 DC "C2'" "H2''" sing N N 164 DC "C1'" N1 sing N N 165 DC "C1'" "H1'" sing N N 166 DC N1 C2 sing N N 167 DC N1 C6 sing N N 168 DC C2 O2 doub N N 169 DC C2 N3 sing N N 170 DC N3 C4 doub N N 171 DC C4 N4 sing N N 172 DC C4 C5 sing N N 173 DC N4 H41 sing N N 174 DC N4 H42 sing N N 175 DC C5 C6 doub N N 176 DC C5 H5 sing N N 177 DC C6 H6 sing N N 178 DG OP3 P sing N N 179 DG OP3 HOP3 sing N N 180 DG P OP1 doub N N 181 DG P OP2 sing N N 182 DG P "O5'" sing N N 183 DG OP2 HOP2 sing N N 184 DG "O5'" "C5'" sing N N 185 DG "C5'" "C4'" sing N N 186 DG "C5'" "H5'" sing N N 187 DG "C5'" "H5''" sing N N 188 DG "C4'" "O4'" sing N N 189 DG "C4'" "C3'" sing N N 190 DG "C4'" "H4'" sing N N 191 DG "O4'" "C1'" sing N N 192 DG "C3'" "O3'" sing N N 193 DG "C3'" "C2'" sing N N 194 DG "C3'" "H3'" sing N N 195 DG "O3'" "HO3'" sing N N 196 DG "C2'" "C1'" sing N N 197 DG "C2'" "H2'" sing N N 198 DG "C2'" "H2''" sing N N 199 DG "C1'" N9 sing N N 200 DG "C1'" "H1'" sing N N 201 DG N9 C8 sing Y N 202 DG N9 C4 sing Y N 203 DG C8 N7 doub Y N 204 DG C8 H8 sing N N 205 DG N7 C5 sing Y N 206 DG C5 C6 sing N N 207 DG C5 C4 doub Y N 208 DG C6 O6 doub N N 209 DG C6 N1 sing N N 210 DG N1 C2 sing N N 211 DG N1 H1 sing N N 212 DG C2 N2 sing N N 213 DG C2 N3 doub N N 214 DG N2 H21 sing N N 215 DG N2 H22 sing N N 216 DG N3 C4 sing N N 217 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1ON5 'double helix' 1ON5 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A 5AT 1 1_555 B DA 6 1_555 0.226 -0.224 0.378 -20.709 -11.710 8.848 1 A_5AT2:DA7_B A 2 ? B 7 ? 20 1 1 A DG 2 1_555 B DC 5 1_555 -0.105 -0.189 0.011 -6.859 -3.790 -0.325 2 A_DG3:DC6_B A 3 ? B 6 ? 19 1 1 A DC 3 1_555 B DG 4 1_555 0.086 -0.178 -0.152 -5.829 9.055 -0.574 3 A_DC4:DG5_B A 4 ? B 5 ? 19 1 1 A DG 4 1_555 B DC 3 1_555 -0.829 -0.357 -0.005 4.200 3.517 0.838 4 A_DG5:DC4_B A 5 ? B 4 ? 19 1 1 A DC 5 1_555 B DG 2 1_555 0.792 -0.443 0.353 7.438 -8.835 -1.459 5 A_DC6:DG3_B A 6 ? B 3 ? 19 1 1 A DA 6 1_555 B 5AT 1 1_555 -0.138 -0.214 0.329 19.058 -8.363 11.444 6 A_DA7:5AT2_B A 7 ? B 2 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A 5AT 1 1_555 B DA 6 1_555 A DG 2 1_555 B DC 5 1_555 0.092 0.116 2.707 4.222 5.440 33.872 -0.506 0.389 2.684 9.218 -7.155 34.545 1 AA_5AT2DG3:DC6DA7_BB A 2 ? B 7 ? A 3 ? B 6 ? 1 A DG 2 1_555 B DC 5 1_555 A DC 3 1_555 B DG 4 1_555 -0.120 0.524 3.453 -2.025 15.717 34.120 -1.439 -0.104 3.369 25.172 3.243 37.521 2 AA_DG3DC4:DG5DC6_BB A 3 ? B 6 ? A 4 ? B 5 ? 1 A DC 3 1_555 B DG 4 1_555 A DG 4 1_555 B DC 3 1_555 -0.848 -0.935 2.997 -5.657 14.800 23.342 -4.933 0.592 2.176 32.249 12.326 28.149 3 AA_DC4DG5:DC4DG5_BB A 4 ? B 5 ? A 5 ? B 4 ? 1 A DG 4 1_555 B DC 3 1_555 A DC 5 1_555 B DG 2 1_555 -1.307 -0.589 3.029 -5.447 3.460 40.044 -1.215 1.311 3.113 5.013 7.893 40.540 4 AA_DG5DC6:DG3DC4_BB A 5 ? B 4 ? A 6 ? B 3 ? 1 A DC 5 1_555 B DG 2 1_555 A DA 6 1_555 B 5AT 1 1_555 0.427 -0.530 2.777 -0.661 -0.388 32.559 -0.888 -0.860 2.774 -0.691 1.178 32.568 5 AA_DC6DA7:5AT2DG3_BB A 6 ? B 3 ? A 7 ? B 2 ? # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.field_strength 1 ? Bruker DRX 600 2 ? Bruker DRX 600 # _atom_sites.entry_id 1ON5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_