HEADER PLANT LECTIN 07-JUL-96 1ONA TITLE CO-CRYSTALS OF CONCANAVALIN A WITH METHYL-3,6-DI-O-(ALPHA-D- TITLE 2 MANNOPYRANOSYL)-ALPHA-D-MANNOPYRANOSIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONCANAVALIN A; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: CON A; COMPND 5 OTHER_DETAILS: CO-CRYSTALS OF CONCANAVALIN A WITH METHYL-3,6-DI-O- COMPND 6 (ALPHA-D-MANNOPYRANOSYL)-ALPHA-D-MANNOPYRANOSIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CANAVALIA ENSIFORMIS; SOURCE 3 ORGANISM_COMMON: JACK BEAN; SOURCE 4 ORGANISM_TAXID: 3823; SOURCE 5 ORGAN: BEAN KEYWDS PLANT LECTIN, MANGANESE, GLYCOPROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.BOUCKAERT,D.MAES,F.POORTMANS,L.WYNS,R.LORIS REVDAT 6 09-AUG-23 1ONA 1 HETSYN REVDAT 5 29-JUL-20 1ONA 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE ATOM REVDAT 4 18-APR-18 1ONA 1 REMARK REVDAT 3 17-FEB-16 1ONA 1 HET LINK VERSN REVDAT 2 24-FEB-09 1ONA 1 VERSN REVDAT 1 17-SEP-97 1ONA 0 JRNL AUTH R.LORIS,D.MAES,F.POORTMANS,L.WYNS,J.BOUCKAERT JRNL TITL A STRUCTURE OF THE COMPLEX BETWEEN CONCANAVALIN A AND JRNL TITL 2 METHYL-3,6-DI-O-(ALPHA-D-MANNOPYRANOSYL) JRNL TITL 3 -ALPHA-D-MANNOPYRANOSIDE REVEALS TWO BINDING MODES. JRNL REF J.BIOL.CHEM. V. 271 30614 1996 JRNL REFN ISSN 0021-9258 JRNL PMID 8940035 JRNL DOI 10.1074/JBC.271.48.30614 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.BOUCKAERT,F.POORTMANS,L.WYNS REMARK 1 TITL CONCANAVALIN A CRYSTALLIZED IN COMPLEX WITH THE REMARK 1 TITL 2 TRISACCHARIDE REMARK 1 TITL 3 3,6-DI-O-(ALPHA-D-MANNOPYRANOSYL)-ALPHA-D-MANNOPYRANOSIDE REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 52 879 1996 REMARK 1 REFN ISSN 0907-4449 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.H.NAISMITH,R.A.FIELD REMARK 1 TITL STRUCTURAL BASIS OF TRIMANNOSIDE RECOGNITION BY CONCANAVALIN REMARK 1 TITL 2 A REMARK 1 REF J.BIOL.CHEM. V. 271 972 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 74.220 REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 28287 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.221 REMARK 3 FREE R VALUE : 0.282 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 179 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.45 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 40.24 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1893 REMARK 3 BIN R VALUE (WORKING SET) : 0.2916 REMARK 3 BIN FREE R VALUE : 0.3815 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 1714 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7020 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 148 REMARK 3 SOLVENT ATOMS : 200 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 15.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.20 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.012 REMARK 3 BOND ANGLES (DEGREES) : 1.790 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.52 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.530 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ONA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000175479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-MAR-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : ENRAF-NONIUS FAST REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MADNES REMARK 200 DATA SCALING SOFTWARE : CCP4 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29495 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 71.3 REMARK 200 DATA REDUNDANCY : 1.500 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 22.6 REMARK 200 DATA REDUNDANCY IN SHELL : 1.10 REMARK 200 R MERGE FOR SHELL (I) : 0.19900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR 3.1 REMARK 200 STARTING MODEL: PDB ENTRY 5CNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.38 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% POLYETHYLENEGLYCOLMETHYLETHER, 40 REMARK 280 MM HEPES PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.42000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE ASYMMETRIC UNIT CONTAINS A TETRAMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11390 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D, E, F, G, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 117 REMARK 465 ASN A 118 REMARK 465 SER A 119 REMARK 465 THR A 120 REMARK 465 HIS A 121 REMARK 465 GLU A 122 REMARK 465 SER B 117 REMARK 465 ASN B 118 REMARK 465 SER B 119 REMARK 465 THR B 120 REMARK 465 HIS B 121 REMARK 465 GLU B 122 REMARK 465 SER C 117 REMARK 465 ASN C 118 REMARK 465 SER C 119 REMARK 465 THR C 120 REMARK 465 HIS C 121 REMARK 465 GLU C 122 REMARK 465 SER D 117 REMARK 465 ASN D 118 REMARK 465 SER D 119 REMARK 465 THR D 120 REMARK 465 HIS D 121 REMARK 465 GLU D 122 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 135 CG CD CE NZ REMARK 470 GLN A 166 CG CD OE1 NE2 REMARK 470 LYS B 135 CG CD CE NZ REMARK 470 GLN B 166 CG CD OE1 NE2 REMARK 470 LYS C 135 CG CD CE NZ REMARK 470 GLN C 166 CG CD OE1 NE2 REMARK 470 LYS D 135 CG CD CE NZ REMARK 470 GLN D 166 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 14 78.26 -109.53 REMARK 500 SER A 21 33.03 -77.38 REMARK 500 THR A 150 71.92 -69.81 REMARK 500 ASP A 151 20.77 84.75 REMARK 500 ASN A 162 -6.34 -56.74 REMARK 500 GLU A 183 119.05 -170.35 REMARK 500 ASP A 218 34.05 -98.37 REMARK 500 SER A 225 39.22 -74.96 REMARK 500 ASN B 14 78.86 -112.39 REMARK 500 SER B 21 38.17 -78.01 REMARK 500 ASP B 151 20.68 85.11 REMARK 500 ASN B 162 -5.39 -57.81 REMARK 500 GLU B 183 114.73 -170.95 REMARK 500 ASP B 218 33.68 -97.14 REMARK 500 SER B 225 37.08 -76.59 REMARK 500 LEU B 230 19.27 51.27 REMARK 500 ASN C 14 77.27 -112.79 REMARK 500 SER C 21 32.83 -76.96 REMARK 500 THR C 150 74.65 -69.31 REMARK 500 ASP C 151 20.14 81.07 REMARK 500 ASN C 162 -3.01 -48.90 REMARK 500 GLU C 183 116.16 -172.21 REMARK 500 ASP C 218 33.98 -97.36 REMARK 500 SER C 225 39.22 -77.37 REMARK 500 LEU C 230 18.89 51.85 REMARK 500 ALA C 236 32.56 -97.76 REMARK 500 ASN D 14 79.39 -113.88 REMARK 500 SER D 21 31.59 -80.62 REMARK 500 THR D 150 72.66 -68.73 REMARK 500 ASP D 151 20.13 83.87 REMARK 500 ASN D 162 -4.72 -53.07 REMARK 500 GLU D 183 119.40 -169.68 REMARK 500 ASP D 218 34.34 -96.70 REMARK 500 SER D 225 39.55 -76.56 REMARK 500 LEU D 230 16.79 51.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 238 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 8 OE2 REMARK 620 2 ASP A 10 OD2 81.6 REMARK 620 3 ASP A 19 OD1 166.3 108.3 REMARK 620 4 HIS A 24 NE2 90.9 91.5 98.2 REMARK 620 5 HOH A 243 O 83.8 95.7 85.7 170.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 239 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 10 OD1 REMARK 620 2 ASP A 10 OD2 50.7 REMARK 620 3 TYR A 12 O 75.0 111.1 REMARK 620 4 ASN A 14 OD1 161.1 148.0 93.0 REMARK 620 5 ASP A 19 OD2 104.7 66.0 97.4 91.1 REMARK 620 6 HOH A 247 O 58.9 100.0 79.3 105.0 163.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 238 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 8 OE2 REMARK 620 2 ASP B 10 OD2 88.6 REMARK 620 3 ASP B 19 OD1 164.8 99.7 REMARK 620 4 HIS B 24 NE2 100.4 94.7 91.7 REMARK 620 5 HOH B 248 O 82.1 87.7 85.5 176.5 REMARK 620 6 HOH B 252 O 97.5 173.4 75.0 81.6 95.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA D 239 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 10 OD1 REMARK 620 2 ASP B 10 OD2 55.1 REMARK 620 3 TYR B 12 O 76.1 112.9 REMARK 620 4 ASN B 14 OD1 153.9 150.1 82.8 REMARK 620 5 ASP B 19 OD2 110.7 70.3 91.3 84.7 REMARK 620 6 HOH B 261 O 122.2 79.3 161.5 80.3 79.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 238 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU C 8 OE2 REMARK 620 2 ASP C 10 OD2 80.9 REMARK 620 3 ASP C 19 OD1 161.6 107.2 REMARK 620 4 HIS C 24 NE2 93.8 98.1 101.2 REMARK 620 5 HOH C 257 O 76.2 87.0 87.6 168.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 239 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 10 OD1 REMARK 620 2 ASP C 10 OD2 54.7 REMARK 620 3 TYR C 12 O 79.7 118.0 REMARK 620 4 ASN C 14 OD1 158.3 146.9 85.6 REMARK 620 5 ASP C 19 OD2 112.1 71.1 94.9 84.9 REMARK 620 6 HOH C 246 O 114.9 78.3 163.4 78.1 87.1 REMARK 620 7 HOH C 248 O 81.4 113.2 96.1 84.4 164.0 79.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN C 238 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU D 8 OE2 REMARK 620 2 ASP D 10 OD2 82.6 REMARK 620 3 ASP D 19 OD1 170.9 103.1 REMARK 620 4 HIS D 24 NE2 93.4 87.1 93.9 REMARK 620 5 HOH D 257 O 84.3 89.9 88.6 176.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 239 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 10 OD1 REMARK 620 2 ASP D 10 OD2 54.3 REMARK 620 3 TYR D 12 O 77.7 119.1 REMARK 620 4 ASN D 14 OD1 157.6 145.6 91.5 REMARK 620 5 ASP D 19 OD2 116.8 71.7 107.1 85.1 REMARK 620 6 HOH D 247 O 64.2 102.5 84.4 95.5 168.5 REMARK 620 7 HOH D 268 O 108.4 69.6 171.2 80.6 76.2 92.6 REMARK 620 N 1 2 3 4 5 6 DBREF 1ONA A 119 237 UNP P02866 CONA_CANEN 30 148 DBREF 1ONA B 119 237 UNP P02866 CONA_CANEN 30 148 DBREF 1ONA C 119 237 UNP P02866 CONA_CANEN 30 148 DBREF 1ONA D 119 237 UNP P02866 CONA_CANEN 30 148 SEQADV 1ONA ASP A 151 UNP P02866 GLU 62 CONFLICT SEQADV 1ONA GLU A 155 UNP P02866 ARG 66 CONFLICT SEQADV 1ONA ASP B 151 UNP P02866 GLU 62 CONFLICT SEQADV 1ONA GLU B 155 UNP P02866 ARG 66 CONFLICT SEQADV 1ONA ASP C 151 UNP P02866 GLU 62 CONFLICT SEQADV 1ONA GLU C 155 UNP P02866 ARG 66 CONFLICT SEQADV 1ONA ASP D 151 UNP P02866 GLU 62 CONFLICT SEQADV 1ONA GLU D 155 UNP P02866 ARG 66 CONFLICT SEQRES 1 A 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 A 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 A 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 A 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 A 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 A 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 A 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 A 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 A 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 A 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 A 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 A 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 A 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 A 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 A 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 A 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 A 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 A 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 A 237 ASP ALA ASN SEQRES 1 B 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 B 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 B 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 B 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 B 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 B 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 B 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 B 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 B 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 B 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 B 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 B 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 B 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 B 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 B 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 B 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 B 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 B 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 B 237 ASP ALA ASN SEQRES 1 C 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 C 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 C 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 C 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 C 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 C 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 C 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 C 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 C 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 C 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 C 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 C 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 C 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 C 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 C 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 C 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 C 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 C 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 C 237 ASP ALA ASN SEQRES 1 D 237 ALA ASP THR ILE VAL ALA VAL GLU LEU ASP THR TYR PRO SEQRES 2 D 237 ASN THR ASP ILE GLY ASP PRO SER TYR PRO HIS ILE GLY SEQRES 3 D 237 ILE ASP ILE LYS SER VAL ARG SER LYS LYS THR ALA LYS SEQRES 4 D 237 TRP ASN MET GLN ASN GLY LYS VAL GLY THR ALA HIS ILE SEQRES 5 D 237 ILE TYR ASN SER VAL ASP LYS ARG LEU SER ALA VAL VAL SEQRES 6 D 237 SER TYR PRO ASN ALA ASP SER ALA THR VAL SER TYR ASP SEQRES 7 D 237 VAL ASP LEU ASP ASN VAL LEU PRO GLU TRP VAL ARG VAL SEQRES 8 D 237 GLY LEU SER ALA SER THR GLY LEU TYR LYS GLU THR ASN SEQRES 9 D 237 THR ILE LEU SER TRP SER PHE THR SER LYS LEU LYS SER SEQRES 10 D 237 ASN SER THR HIS GLU THR ASN ALA LEU HIS PHE MET PHE SEQRES 11 D 237 ASN GLN PHE SER LYS ASP GLN LYS ASP LEU ILE LEU GLN SEQRES 12 D 237 GLY ASP ALA THR THR GLY THR ASP GLY ASN LEU GLU LEU SEQRES 13 D 237 THR ARG VAL SER SER ASN GLY SER PRO GLN GLY SER SER SEQRES 14 D 237 VAL GLY ARG ALA LEU PHE TYR ALA PRO VAL HIS ILE TRP SEQRES 15 D 237 GLU SER SER ALA VAL VAL ALA SER PHE GLU ALA THR PHE SEQRES 16 D 237 THR PHE LEU ILE LYS SER PRO ASP SER HIS PRO ALA ASP SEQRES 17 D 237 GLY ILE ALA PHE PHE ILE SER ASN ILE ASP SER SER ILE SEQRES 18 D 237 PRO SER GLY SER THR GLY ARG LEU LEU GLY LEU PHE PRO SEQRES 19 D 237 ASP ALA ASN HET MMA E 1 13 HET MAN E 2 11 HET MAN E 3 11 HET MMA F 1 13 HET MAN F 2 11 HET MAN F 3 11 HET MMA G 1 13 HET MAN G 2 11 HET MAN G 3 11 HET MMA H 1 13 HET MAN H 2 11 HET MAN H 3 11 HET MN A 238 1 HET CA A 239 1 HET MN B 238 1 HET CA B 239 1 HET MN C 238 1 HET CA C 239 1 HET MN D 238 1 HET CA D 239 1 HETNAM MMA METHYL ALPHA-D-MANNOPYRANOSIDE HETNAM MAN ALPHA-D-MANNOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM CA CALCIUM ION HETSYN MMA O1-METHYL-MANNOSE; METHYL ALPHA-D-MANNOSIDE; METHYL D- HETSYN 2 MMA MANNOSIDE; METHYL MANNOSIDE HETSYN MAN ALPHA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 5 MMA 4(C7 H14 O6) FORMUL 5 MAN 8(C6 H12 O6) FORMUL 9 MN 4(MN 2+) FORMUL 10 CA 4(CA 2+) FORMUL 17 HOH *200(H2 O) HELIX 1 1 THR A 15 ILE A 17 5 3 HELIX 2 2 LEU A 81 ASN A 83 5 3 HELIX 3 3 GLY A 227 LEU A 229 5 3 HELIX 4 4 THR B 15 ILE B 17 5 3 HELIX 5 5 LEU B 81 ASN B 83 5 3 HELIX 6 6 GLY B 227 LEU B 229 5 3 HELIX 7 7 THR C 15 ILE C 17 5 3 HELIX 8 8 GLY C 227 LEU C 229 5 3 HELIX 9 9 THR D 15 ILE D 17 5 3 HELIX 10 10 GLY D 227 LEU D 229 5 3 SHEET 1 S1 7 LYS A 36 LYS A 39 0 SHEET 2 S1 7 HIS A 24 ILE A 29 -1 SHEET 3 S1 7 ILE A 4 ASP A 10 -1 SHEET 4 S1 7 GLY A 209 ASN A 216 -1 SHEET 5 S1 7 TRP A 88 SER A 96 -1 SHEET 6 S1 7 VAL A 170 PHE A 175 -1 SHEET 7 S1 7 LEU A 140 GLY A 144 -1 SHEET 1 S2 6 ALA A 73 ASP A 78 0 SHEET 2 S2 6 ARG A 60 SER A 66 -1 SHEET 3 S2 6 VAL A 47 ASN A 55 -1 SHEET 4 S2 6 ALA A 186 LYS A 200 -1 SHEET 5 S2 6 THR A 103 LYS A 116 -1 SHEET 6 S2 6 THR A 123 PHE A 130 -1 SHEET 1 S3 7 LYS B 36 LYS B 39 0 SHEET 2 S3 7 HIS B 24 ILE B 29 -1 SHEET 3 S3 7 ILE B 4 ASP B 10 -1 SHEET 4 S3 7 GLY B 209 ASN B 216 -1 SHEET 5 S3 7 TRP B 88 SER B 96 -1 SHEET 6 S3 7 VAL B 170 PHE B 175 -1 SHEET 7 S3 7 LEU B 140 GLY B 144 -1 SHEET 1 S4 6 ALA B 73 ASP B 78 0 SHEET 2 S4 6 ARG B 60 SER B 66 -1 SHEET 3 S4 6 VAL B 47 ASN B 55 -1 SHEET 4 S4 6 ALA B 186 LYS B 200 -1 SHEET 5 S4 6 THR B 103 LYS B 116 -1 SHEET 6 S4 6 THR B 123 PHE B 130 -1 SHEET 1 S5 7 LYS C 36 LYS C 39 0 SHEET 2 S5 7 HIS C 24 ILE C 29 -1 SHEET 3 S5 7 ILE C 4 ASP C 10 -1 SHEET 4 S5 7 GLY C 209 ASN C 216 -1 SHEET 5 S5 7 TRP C 88 SER C 96 -1 SHEET 6 S5 7 VAL C 170 PHE C 175 -1 SHEET 7 S5 7 LEU C 140 GLY C 144 -1 SHEET 1 S6 6 ALA C 73 ASP C 78 0 SHEET 2 S6 6 ARG C 60 SER C 66 -1 SHEET 3 S6 6 VAL C 47 ASN C 55 -1 SHEET 4 S6 6 ALA C 186 LYS C 200 -1 SHEET 5 S6 6 THR C 103 LYS C 116 -1 SHEET 6 S6 6 THR C 123 PHE C 130 -1 SHEET 1 S7 7 LYS D 36 LYS D 39 0 SHEET 2 S7 7 HIS D 24 ILE D 29 -1 SHEET 3 S7 7 ILE D 4 ASP D 10 -1 SHEET 4 S7 7 GLY D 209 ASN D 216 -1 SHEET 5 S7 7 TRP D 88 SER D 96 -1 SHEET 6 S7 7 VAL D 170 PHE D 175 -1 SHEET 7 S7 7 LEU D 140 GLY D 144 -1 SHEET 1 S8 6 ALA D 73 ASP D 78 0 SHEET 2 S8 6 ARG D 60 SER D 66 -1 SHEET 3 S8 6 VAL D 47 ASN D 55 -1 SHEET 4 S8 6 ALA D 186 LYS D 200 -1 SHEET 5 S8 6 THR D 103 LYS D 116 -1 SHEET 6 S8 6 THR D 123 PHE D 130 -1 LINK O3 MMA E 1 C1 MAN E 2 1555 1555 1.39 LINK O6 MMA E 1 C1 MAN E 3 1555 1555 1.38 LINK O3 MMA F 1 C1 MAN F 2 1555 1555 1.38 LINK O6 MMA F 1 C1 MAN F 3 1555 1555 1.38 LINK O3 MMA G 1 C1 MAN G 2 1555 1555 1.38 LINK O6 MMA G 1 C1 MAN G 3 1555 1555 1.40 LINK O3 MMA H 1 C1 MAN H 2 1555 1555 1.38 LINK O6 MMA H 1 C1 MAN H 3 1555 1555 1.38 LINK OE2 GLU A 8 MN MN A 238 1555 1555 2.51 LINK OD2 ASP A 10 MN MN A 238 1555 1555 2.19 LINK OD1 ASP A 10 CA CA A 239 1555 1555 2.41 LINK OD2 ASP A 10 CA CA A 239 1555 1555 2.73 LINK O TYR A 12 CA CA A 239 1555 1555 2.13 LINK OD1 ASN A 14 CA CA A 239 1555 1555 2.09 LINK OD1 ASP A 19 MN MN A 238 1555 1555 2.55 LINK OD2 ASP A 19 CA CA A 239 1555 1555 2.59 LINK NE2 HIS A 24 MN MN A 238 1555 1555 2.38 LINK MN MN A 238 O HOH A 243 1555 1555 2.45 LINK CA CA A 239 O HOH A 247 1555 1555 2.53 LINK OE2 GLU B 8 MN MN D 238 1555 1555 2.15 LINK OD2 ASP B 10 MN MN D 238 1555 1555 2.21 LINK OD1 ASP B 10 CA CA D 239 1555 1555 2.22 LINK OD2 ASP B 10 CA CA D 239 1555 1555 2.48 LINK O TYR B 12 CA CA D 239 1555 1555 2.33 LINK OD1 ASN B 14 CA CA D 239 1555 1555 2.29 LINK OD1 ASP B 19 MN MN D 238 1555 1555 2.67 LINK OD2 ASP B 19 CA CA D 239 1555 1555 2.61 LINK NE2 HIS B 24 MN MN D 238 1555 1555 2.32 LINK MN MN B 238 OE2 GLU C 8 1555 1555 2.50 LINK MN MN B 238 OD2 ASP C 10 1555 1555 2.19 LINK MN MN B 238 OD1 ASP C 19 1555 1555 2.38 LINK MN MN B 238 NE2 HIS C 24 1555 1555 2.26 LINK MN MN B 238 O HOH C 257 1555 1555 2.33 LINK CA CA B 239 OD1 ASP C 10 1555 1555 2.20 LINK CA CA B 239 OD2 ASP C 10 1555 1555 2.54 LINK CA CA B 239 O TYR C 12 1555 1555 2.14 LINK CA CA B 239 OD1 ASN C 14 1555 1555 2.21 LINK CA CA B 239 OD2 ASP C 19 1555 1555 2.55 LINK CA CA B 239 O HOH C 246 1555 1555 2.70 LINK CA CA B 239 O HOH C 248 1555 1555 2.32 LINK O HOH B 248 MN MN D 238 1555 1555 2.14 LINK O HOH B 252 MN MN D 238 1555 1555 1.92 LINK O HOH B 261 CA CA D 239 1555 1555 2.29 LINK MN MN C 238 OE2 GLU D 8 1555 1555 2.35 LINK MN MN C 238 OD2 ASP D 10 1555 1555 2.33 LINK MN MN C 238 OD1 ASP D 19 1555 1555 2.60 LINK MN MN C 238 NE2 HIS D 24 1555 1555 2.30 LINK MN MN C 238 O HOH D 257 1555 1555 2.35 LINK CA CA C 239 OD1 ASP D 10 1555 1555 2.28 LINK CA CA C 239 OD2 ASP D 10 1555 1555 2.52 LINK CA CA C 239 O TYR D 12 1555 1555 2.12 LINK CA CA C 239 OD1 ASN D 14 1555 1555 2.31 LINK CA CA C 239 OD2 ASP D 19 1555 1555 2.52 LINK CA CA C 239 O HOH D 247 1555 1555 2.54 LINK CA CA C 239 O HOH D 268 1555 1555 2.50 CISPEP 1 ALA A 207 ASP A 208 0 -5.71 CISPEP 2 ALA B 207 ASP B 208 0 2.97 CISPEP 3 ALA C 207 ASP C 208 0 3.38 CISPEP 4 ALA D 207 ASP D 208 0 0.40 CRYST1 59.830 64.840 125.920 90.00 93.87 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016714 0.000000 0.001131 0.00000 SCALE2 0.000000 0.015423 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007960 0.00000