HEADER OXIDOREDUCTASE 27-FEB-03 1ONF TITLE CRYSTAL STRUCTURE OF PLASMODIUM FALCIPARUM GLUTATHIONE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GR, GRASE; COMPND 5 EC: 1.8.1.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM FALCIPARUM; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. FALCIPARUM; SOURCE 4 ORGANISM_TAXID: 5833; SOURCE 5 GENE: GR2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SG5(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B+ KEYWDS OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR G.N.SARMA,S.N.SAVVIDES,K.BECKER,M.SCHIRMER,R.H.SCHIRMER,P.A.KARPLUS REVDAT 4 16-AUG-23 1ONF 1 REMARK REVDAT 3 13-JUL-11 1ONF 1 VERSN REVDAT 2 24-FEB-09 1ONF 1 VERSN REVDAT 1 06-MAY-03 1ONF 0 JRNL AUTH G.N.SARMA,S.N.SAVVIDES,K.BECKER,M.SCHIRMER,R.H.SCHIRMER, JRNL AUTH 2 P.A.KARPLUS JRNL TITL GLUTATHIONE REDUCTASE OF THE MALARIAL PARASITE PLASMODIUM JRNL TITL 2 FALCIPARUM: CRYSTAL STRUCTURE AND INHIBITOR DEVELOPMENT JRNL REF J.MOL.BIOL. V. 328 893 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12729762 JRNL DOI 10.1016/S0022-2836(03)00347-4 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.36 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 3 NUMBER OF REFLECTIONS : 14029 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.260 REMARK 3 R VALUE (WORKING SET) : 0.256 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1575 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 943 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE SET COUNT : 97 REMARK 3 BIN FREE R VALUE : 0.3420 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3457 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 43 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.09 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : 0.06000 REMARK 3 B33 (A**2) : -0.13000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.409 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.324 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 14.747 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.903 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3570 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4823 ; 2.093 ; 1.981 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 433 ; 4.476 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 673 ;21.783 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 553 ; 0.142 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2619 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1775 ; 0.318 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 253 ; 0.189 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 72 ; 0.219 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 5 ; 0.191 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2171 ; 0.662 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3513 ; 1.187 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1399 ; 2.259 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1310 ; 3.481 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): 70.0540 67.0900 86.4760 REMARK 3 T TENSOR REMARK 3 T11: 0.2578 T22: 0.1760 REMARK 3 T33: 0.3333 T12: -0.0663 REMARK 3 T13: -0.0119 T23: -0.0300 REMARK 3 L TENSOR REMARK 3 L11: 3.1717 L22: 3.6247 REMARK 3 L33: 1.1162 L12: 1.9338 REMARK 3 L13: -0.6485 L23: -1.0075 REMARK 3 S TENSOR REMARK 3 S11: 0.0013 S12: 0.0583 S13: 0.7823 REMARK 3 S21: 0.2214 S22: 0.0682 S23: 0.2482 REMARK 3 S31: -0.5281 S32: 0.1381 S33: -0.0695 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 149 A 275 REMARK 3 ORIGIN FOR THE GROUP (A): 63.8940 52.5420 66.6980 REMARK 3 T TENSOR REMARK 3 T11: 0.2662 T22: 0.3340 REMARK 3 T33: 0.1372 T12: -0.2011 REMARK 3 T13: 0.0058 T23: 0.0533 REMARK 3 L TENSOR REMARK 3 L11: 1.3516 L22: 3.6430 REMARK 3 L33: 4.2390 L12: 0.1603 REMARK 3 L13: 0.9558 L23: 0.2380 REMARK 3 S TENSOR REMARK 3 S11: -0.4085 S12: 0.4594 S13: 0.2986 REMARK 3 S21: -0.5937 S22: 0.3216 S23: 0.1361 REMARK 3 S31: -0.5919 S32: 0.0709 S33: 0.0869 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 276 A 378 REMARK 3 ORIGIN FOR THE GROUP (A): 89.1690 69.8550 76.2270 REMARK 3 T TENSOR REMARK 3 T11: 0.3447 T22: 0.5775 REMARK 3 T33: 0.5220 T12: -0.3415 REMARK 3 T13: 0.0726 T23: 0.0407 REMARK 3 L TENSOR REMARK 3 L11: 4.1335 L22: 6.8151 REMARK 3 L33: 1.0314 L12: 1.8497 REMARK 3 L13: -1.8842 L23: 0.0826 REMARK 3 S TENSOR REMARK 3 S11: -0.1626 S12: 0.5725 S13: 0.3871 REMARK 3 S21: -0.6446 S22: 0.2407 S23: -0.6587 REMARK 3 S31: -0.3292 S32: 1.0639 S33: -0.0781 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 379 A 495 REMARK 3 ORIGIN FOR THE GROUP (A): 81.1720 38.4250 84.0390 REMARK 3 T TENSOR REMARK 3 T11: 0.0345 T22: 0.3603 REMARK 3 T33: 0.2095 T12: 0.0512 REMARK 3 T13: 0.0533 T23: -0.1107 REMARK 3 L TENSOR REMARK 3 L11: 3.2272 L22: 1.1188 REMARK 3 L33: 2.7099 L12: -0.1213 REMARK 3 L13: -0.8056 L23: -1.0794 REMARK 3 S TENSOR REMARK 3 S11: -0.0897 S12: 0.3980 S13: -0.3743 REMARK 3 S21: -0.1868 S22: 0.0468 S23: -0.3641 REMARK 3 S31: 0.1211 S32: 0.6650 S33: 0.0430 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 R AND R-FREE VALUES ARE DIFFERENT FROM THE REMARK 3 PUBLICATION BECAUSE THE STRUCTURE WAS REFINED REMARK 3 FURTHER PRIOR TO PDB SUBMISSION. REFINEMENT REMARK 3 WAS CARRIED OUT BY FIXING THE RESIDUE A GLU 31 REMARK 3 TO AVOID IT MOVING TO CREATE A CLOSE CONTACT REMARK 3 WITH THE AO2* AND AO3* ATOMS OF THE FAD REMARK 4 REMARK 4 1ONF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018469. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16434 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.7 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 3GRS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 9.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.66000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 30.83000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 92.49000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 61.66000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 92.49000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 30.83000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10080 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 37080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 90.64000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 184.98000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 SER A 114 REMARK 465 GLU A 115 REMARK 465 ASN A 116 REMARK 465 ARG A 117 REMARK 465 ILE A 118 REMARK 465 LEU A 119 REMARK 465 ILE A 120 REMARK 465 LYS A 121 REMARK 465 GLY A 122 REMARK 465 THR A 123 REMARK 465 LYS A 124 REMARK 465 ASP A 125 REMARK 465 ASN A 126 REMARK 465 ASN A 127 REMARK 465 ASN A 128 REMARK 465 LYS A 129 REMARK 465 ASP A 130 REMARK 465 ASN A 131 REMARK 465 GLY A 132 REMARK 465 PRO A 133 REMARK 465 LEU A 134 REMARK 465 ASN A 135 REMARK 465 GLU A 136 REMARK 465 GLU A 137 REMARK 465 ILE A 138 REMARK 465 LEU A 139 REMARK 465 LYS A 317 REMARK 465 SER A 318 REMARK 465 LYS A 319 REMARK 465 GLU A 320 REMARK 465 ILE A 321 REMARK 465 GLU A 322 REMARK 465 ASP A 323 REMARK 465 LEU A 324 REMARK 465 ASN A 325 REMARK 465 LEU A 326 REMARK 465 LEU A 327 REMARK 465 LYS A 328 REMARK 465 LEU A 329 REMARK 465 TYR A 330 REMARK 465 ASN A 331 REMARK 465 GLU A 332 REMARK 465 GLU A 333 REMARK 465 ARG A 334 REMARK 465 TYR A 335 REMARK 465 LEU A 336 REMARK 465 ASN A 337 REMARK 465 LYS A 338 REMARK 465 LYS A 339 REMARK 465 GLU A 340 REMARK 465 ASN A 341 REMARK 465 VAL A 342 REMARK 465 THR A 343 REMARK 465 GLU A 344 REMARK 465 ASP A 345 REMARK 465 ILE A 346 REMARK 465 PRO A 496 REMARK 465 TRP A 497 REMARK 465 MET A 498 REMARK 465 LYS A 499 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 140 CB CG CD OE1 OE2 REMARK 470 LYS A 316 CB CG CD CE NZ REMARK 470 PHE A 347 CB CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 58 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 ASP A 84 CB - CG - OD2 ANGL. DEV. = 6.0 DEGREES REMARK 500 ASP A 200 CB - CG - OD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 ASP A 225 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 42 16.60 -146.38 REMARK 500 CYS A 44 -56.02 -24.72 REMARK 500 LYS A 102 16.84 81.35 REMARK 500 ASN A 150 -149.79 -102.88 REMARK 500 SER A 166 -46.39 -20.84 REMARK 500 PHE A 170 1.32 -69.30 REMARK 500 SER A 175 125.54 -179.85 REMARK 500 SER A 183 23.46 -143.83 REMARK 500 SER A 246 -154.32 -151.52 REMARK 500 LYS A 248 37.78 73.55 REMARK 500 ASN A 249 59.61 -146.54 REMARK 500 CYS A 269 71.02 -112.11 REMARK 500 LYS A 283 45.27 -63.99 REMARK 500 LEU A 284 0.09 -152.33 REMARK 500 ASN A 289 -70.19 -77.86 REMARK 500 ASN A 291 -22.19 81.97 REMARK 500 GLU A 297 -29.17 -39.21 REMARK 500 THR A 301 -166.97 -78.24 REMARK 500 ASN A 305 -40.12 79.47 REMARK 500 ASP A 311 -6.82 -59.61 REMARK 500 ASN A 349 -77.42 -108.52 REMARK 500 VAL A 350 85.34 69.87 REMARK 500 ASN A 358 -71.64 -52.66 REMARK 500 ALA A 359 -66.83 -27.95 REMARK 500 ALA A 364 -37.27 -33.61 REMARK 500 LEU A 369 -122.68 -108.47 REMARK 500 THR A 372 -67.00 -13.16 REMARK 500 LEU A 379 85.03 75.66 REMARK 500 GLU A 445 72.62 65.43 REMARK 500 LEU A 494 82.23 -60.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 FAD A 500 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 500 DBREF 1ONF A 0 499 UNP Q94655 GSHR_PLAFK 0 499 SEQRES 1 A 500 MET VAL TYR ASP LEU ILE VAL ILE GLY GLY GLY SER GLY SEQRES 2 A 500 GLY MET ALA ALA ALA ARG ARG ALA ALA ARG HIS ASN ALA SEQRES 3 A 500 LYS VAL ALA LEU VAL GLU LYS SER ARG LEU GLY GLY THR SEQRES 4 A 500 CYS VAL ASN VAL GLY CYS VAL PRO LYS LYS ILE MET PHE SEQRES 5 A 500 ASN ALA ALA SER VAL HIS ASP ILE LEU GLU ASN SER ARG SEQRES 6 A 500 HIS TYR GLY PHE ASP THR LYS PHE SER PHE ASN LEU PRO SEQRES 7 A 500 LEU LEU VAL GLU ARG ARG ASP LYS TYR ILE GLN ARG LEU SEQRES 8 A 500 ASN ASN ILE TYR ARG GLN ASN LEU SER LYS ASP LYS VAL SEQRES 9 A 500 ASP LEU TYR GLU GLY THR ALA SER PHE LEU SER GLU ASN SEQRES 10 A 500 ARG ILE LEU ILE LYS GLY THR LYS ASP ASN ASN ASN LYS SEQRES 11 A 500 ASP ASN GLY PRO LEU ASN GLU GLU ILE LEU GLU GLY ARG SEQRES 12 A 500 ASN ILE LEU ILE ALA VAL GLY ASN LYS PRO VAL PHE PRO SEQRES 13 A 500 PRO VAL LYS GLY ILE GLU ASN THR ILE SER SER ASP GLU SEQRES 14 A 500 PHE PHE ASN ILE LYS GLU SER LYS LYS ILE GLY ILE VAL SEQRES 15 A 500 GLY SER GLY TYR ILE ALA VAL GLU LEU ILE ASN VAL ILE SEQRES 16 A 500 LYS ARG LEU GLY ILE ASP SER TYR ILE PHE ALA ARG GLY SEQRES 17 A 500 ASN ARG ILE LEU ARG LYS PHE ASP GLU SER VAL ILE ASN SEQRES 18 A 500 VAL LEU GLU ASN ASP MET LYS LYS ASN ASN ILE ASN ILE SEQRES 19 A 500 VAL THR PHE ALA ASP VAL VAL GLU ILE LYS LYS VAL SER SEQRES 20 A 500 ASP LYS ASN LEU SER ILE HIS LEU SER ASP GLY ARG ILE SEQRES 21 A 500 TYR GLU HIS PHE ASP HIS VAL ILE TYR CYS VAL GLY ARG SEQRES 22 A 500 SER PRO ASP THR GLU ASN LEU LYS LEU GLU LYS LEU ASN SEQRES 23 A 500 VAL GLU THR ASN ASN ASN TYR ILE VAL VAL ASP GLU ASN SEQRES 24 A 500 GLN ARG THR SER VAL ASN ASN ILE TYR ALA VAL GLY ASP SEQRES 25 A 500 CYS CYS MET VAL LYS LYS SER LYS GLU ILE GLU ASP LEU SEQRES 26 A 500 ASN LEU LEU LYS LEU TYR ASN GLU GLU ARG TYR LEU ASN SEQRES 27 A 500 LYS LYS GLU ASN VAL THR GLU ASP ILE PHE TYR ASN VAL SEQRES 28 A 500 GLN LEU THR PRO VAL ALA ILE ASN ALA GLY ARG LEU LEU SEQRES 29 A 500 ALA ASP ARG LEU PHE LEU LYS LYS THR ARG LYS THR ASN SEQRES 30 A 500 TYR LYS LEU ILE PRO THR VAL ILE PHE SER HIS PRO PRO SEQRES 31 A 500 ILE GLY THR ILE GLY LEU SER GLU GLU ALA ALA ILE GLN SEQRES 32 A 500 ILE TYR GLY LYS GLU ASN VAL LYS ILE TYR GLU SER LYS SEQRES 33 A 500 PHE THR ASN LEU PHE PHE SER VAL TYR ASP ILE GLU PRO SEQRES 34 A 500 GLU LEU LYS GLU LYS THR TYR LEU LYS LEU VAL CYS VAL SEQRES 35 A 500 GLY LYS ASP GLU LEU ILE LYS GLY LEU HIS ILE ILE GLY SEQRES 36 A 500 LEU ASN ALA ASP GLU ILE VAL GLN GLY PHE ALA VAL ALA SEQRES 37 A 500 LEU LYS MET ASN ALA THR LYS LYS ASP PHE ASP GLU THR SEQRES 38 A 500 ILE PRO ILE HIS PRO THR ALA ALA GLU GLU PHE LEU THR SEQRES 39 A 500 LEU GLN PRO TRP MET LYS HET FAD A 500 52 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 FORMUL 3 HOH *43(H2 O) HELIX 1 1 GLY A 10 HIS A 23 1 14 HELIX 2 2 GLY A 36 VAL A 42 1 7 HELIX 3 3 GLY A 43 SER A 63 1 21 HELIX 4 4 ARG A 64 GLY A 67 5 4 HELIX 5 5 ASN A 75 ASP A 101 1 27 HELIX 6 6 GLY A 159 THR A 163 5 5 HELIX 7 7 SER A 166 PHE A 170 1 5 HELIX 8 8 GLY A 184 ARG A 196 1 13 HELIX 9 9 ASP A 215 ASN A 229 1 15 HELIX 10 10 LEU A 352 LEU A 369 1 18 HELIX 11 11 SER A 396 TYR A 404 1 9 HELIX 12 12 GLY A 405 GLU A 407 5 3 HELIX 13 13 ASN A 418 SER A 422 5 5 HELIX 14 14 GLU A 427 LYS A 431 5 5 HELIX 15 15 ASN A 456 MET A 470 1 15 HELIX 16 16 THR A 473 GLU A 479 1 7 HELIX 17 17 GLU A 489 LEU A 494 1 6 SHEET 1 A 5 ASP A 104 GLU A 107 0 SHEET 2 A 5 VAL A 27 GLU A 31 1 N GLU A 31 O TYR A 106 SHEET 3 A 5 LEU A 4 ILE A 7 1 N VAL A 6 O ALA A 28 SHEET 4 A 5 ILE A 144 ILE A 146 1 O LEU A 145 N ILE A 7 SHEET 5 A 5 ILE A 306 ALA A 308 1 O TYR A 307 N ILE A 146 SHEET 1 B 5 ILE A 164 SER A 165 0 SHEET 2 B 5 HIS A 265 TYR A 268 1 O TYR A 268 N ILE A 164 SHEET 3 B 5 LYS A 177 VAL A 181 1 N GLY A 179 O ILE A 267 SHEET 4 B 5 ASP A 200 PHE A 204 1 O PHE A 204 N ILE A 180 SHEET 5 B 5 ASN A 232 VAL A 234 1 O ASN A 232 N ILE A 203 SHEET 1 C 3 VAL A 239 LYS A 244 0 SHEET 2 C 3 LEU A 250 LEU A 254 -1 O HIS A 253 N GLU A 241 SHEET 3 C 3 ILE A 259 PHE A 263 -1 O PHE A 263 N LEU A 250 SHEET 1 D 2 ILE A 293 VAL A 295 0 SHEET 2 D 2 CYS A 313 VAL A 315 1 O MET A 314 N ILE A 293 SHEET 1 E 5 THR A 382 ILE A 384 0 SHEET 2 E 5 ILE A 390 GLY A 394 -1 O THR A 392 N THR A 382 SHEET 3 E 5 LEU A 446 ILE A 453 -1 O ILE A 452 N GLY A 391 SHEET 4 E 5 THR A 434 VAL A 441 -1 N VAL A 441 O LEU A 446 SHEET 5 E 5 VAL A 409 PHE A 416 -1 N TYR A 412 O LEU A 438 SSBOND 1 CYS A 39 CYS A 44 1555 1555 2.03 CISPEP 1 HIS A 387 PRO A 388 0 -5.01 CISPEP 2 HIS A 484 PRO A 485 0 -4.29 SITE 1 AC1 30 GLY A 8 GLY A 9 GLY A 10 SER A 11 SITE 2 AC1 30 GLY A 12 GLU A 31 LYS A 32 THR A 38 SITE 3 AC1 30 CYS A 39 VAL A 42 GLY A 43 CYS A 44 SITE 4 AC1 30 LYS A 47 GLY A 108 THR A 109 ALA A 110 SITE 5 AC1 30 ALA A 147 VAL A 148 GLY A 149 SER A 166 SITE 6 AC1 30 TYR A 185 ARG A 272 ASP A 275 GLY A 310 SITE 7 AC1 30 ASP A 311 GLN A 351 LEU A 352 THR A 353 SITE 8 AC1 30 PRO A 354 HIS A 484 CRYST1 90.640 90.640 123.320 90.00 90.00 90.00 P 41 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011033 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011033 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008109 0.00000