HEADER OXIDOREDUCTASE 28-FEB-03 1ONP TITLE ISPC COMPLEX WITH MN2+ AND FOSMIDOMYCIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: 1-DEOXY-D-XYLULOSE 5-PHOSPHATE REDUCTOISOMERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE SYNTHASE, ISPC; COMPND 5 EC: 1.1.1.267; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS ISOPRENOID BIOSYNTHESIS, MEVALONATE-INDEPENDENT PATHWAY, ISPC, KEYWDS 2 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR S.STEINBACHER,J.KAISER,W.EISENREICH,R.HUBER,A.BACHER,F.ROHDICH REVDAT 5 25-OCT-23 1ONP 1 REMARK LINK REVDAT 4 24-FEB-09 1ONP 1 VERSN REVDAT 3 13-JAN-04 1ONP 1 JRNL REVDAT 2 20-MAY-03 1ONP 1 JRNL REVDAT 1 18-MAR-03 1ONP 0 JRNL AUTH S.STEINBACHER,J.KAISER,W.EISENREICH,R.HUBER,A.BACHER, JRNL AUTH 2 F.ROHDICH JRNL TITL STRUCTURAL BASIS OF FOSMIDOMYCIN ACTION REVEALED BY THE JRNL TITL 2 COMPLEX WITH 2-C-METHYL-D-ERYTHRITOL 4-PHOSPHATE SYNTHASE JRNL TITL 3 (ISPC). IMPLICATIONS FOR THE CATALYTIC MECHANISM AND JRNL TITL 4 ANTI-MALARIA DRUG DEVELOPMENT. JRNL REF J.BIOL.CHEM. V. 278 18401 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12621040 JRNL DOI 10.1074/JBC.M300993200 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 34888 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.255 REMARK 3 FREE R VALUE : 0.330 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1725 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6046 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 24 REMARK 3 SOLVENT ATOMS : 145 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.760 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1ONP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018479. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU300 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.548 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34930 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.400 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1K5H REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.94 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, PH 5.8, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 26.15050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4380 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 30360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 398 REMARK 465 SER B 398 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG B 370 O HOH B 1045 1565 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 210 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO A 210 C - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 PRO B 210 C - N - CA ANGL. DEV. = 14.4 DEGREES REMARK 500 PRO B 210 C - N - CD ANGL. DEV. = -13.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 4.29 -67.52 REMARK 500 LYS A 37 -24.22 -140.26 REMARK 500 ASN A 38 81.40 -61.99 REMARK 500 SER A 50 60.23 60.15 REMARK 500 ALA A 99 71.18 -65.64 REMARK 500 GLU A 126 -35.74 -37.39 REMARK 500 CYS A 131 46.40 -108.99 REMARK 500 PRO A 163 -9.39 -57.68 REMARK 500 LEU A 173 -72.14 -51.78 REMARK 500 ASP A 197 -9.34 -176.78 REMARK 500 CYS A 207 88.48 -169.44 REMARK 500 ARG A 208 43.80 77.02 REMARK 500 PRO A 210 157.95 -21.43 REMARK 500 ASN A 211 58.02 75.09 REMARK 500 TRP A 212 52.22 83.29 REMARK 500 SER A 213 119.25 -164.50 REMARK 500 MET A 214 83.05 -164.14 REMARK 500 ASN A 240 68.25 60.87 REMARK 500 ALA A 243 -17.91 -47.13 REMARK 500 SER A 258 158.70 156.20 REMARK 500 TRP A 286 140.53 -34.38 REMARK 500 LYS A 301 73.15 -69.29 REMARK 500 TYR A 312 0.29 -60.15 REMARK 500 GLN A 349 66.13 73.71 REMARK 500 GLU A 365 -72.65 -80.01 REMARK 500 LYS A 366 72.62 -60.26 REMARK 500 MET A 367 96.82 168.07 REMARK 500 GLU A 371 130.14 -29.60 REMARK 500 PRO A 372 -162.45 -64.80 REMARK 500 GLN A 373 0.66 -166.32 REMARK 500 LEU A 396 58.72 -110.71 REMARK 500 ASN B 24 49.13 -141.71 REMARK 500 LYS B 37 -31.08 -138.20 REMARK 500 ASN B 38 80.93 -61.35 REMARK 500 LEU B 91 129.34 -38.56 REMARK 500 CYS B 131 51.35 -105.87 REMARK 500 PRO B 163 1.45 -59.21 REMARK 500 LEU B 173 -74.96 -58.84 REMARK 500 ASP B 197 -11.75 -176.34 REMARK 500 CYS B 207 93.66 -164.90 REMARK 500 ARG B 208 45.44 72.19 REMARK 500 PRO B 210 167.69 -20.92 REMARK 500 TRP B 212 54.99 78.91 REMARK 500 SER B 213 118.96 -167.26 REMARK 500 MET B 214 81.74 -164.36 REMARK 500 ASN B 240 67.66 60.89 REMARK 500 ALA B 243 -17.78 -46.12 REMARK 500 SER B 258 159.50 156.49 REMARK 500 TRP B 286 136.99 -32.60 REMARK 500 ASN B 288 -168.81 -100.39 REMARK 500 REMARK 500 THIS ENTRY HAS 61 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 150 OD2 REMARK 620 2 GLU A 152 OE2 102.0 REMARK 620 3 GLU A 231 OE1 75.5 81.4 REMARK 620 4 FOM A1001 O2 157.4 73.3 81.9 REMARK 620 5 FOM A1001 O1 127.8 97.5 155.8 74.8 REMARK 620 6 HOH A1085 O 92.2 157.3 85.2 86.7 87.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1002 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 150 OD2 REMARK 620 2 GLU B 152 OE2 95.4 REMARK 620 3 GLU B 231 OE1 72.1 75.8 REMARK 620 4 FOM B1001 O1 127.9 100.0 160.0 REMARK 620 5 FOM B1001 O2 153.4 67.7 83.6 76.8 REMARK 620 6 HOH B1064 O 102.0 154.7 92.2 83.6 89.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1002 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOM A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FOM B 1001 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1ONN RELATED DB: PDB REMARK 900 THE SAME PROTEIN, APO STRUCTURE REMARK 900 RELATED ID: 1ONO RELATED DB: PDB REMARK 900 THE SAME PROTEIN COMPLEX WITH MN2+ DBREF 1ONP A 1 398 UNP P45568 DXR_ECOLI 1 398 DBREF 1ONP B 1 398 UNP P45568 DXR_ECOLI 1 398 SEQRES 1 A 398 MET LYS GLN LEU THR ILE LEU GLY SER THR GLY SER ILE SEQRES 2 A 398 GLY CYS SER THR LEU ASP VAL VAL ARG HIS ASN PRO GLU SEQRES 3 A 398 HIS PHE ARG VAL VAL ALA LEU VAL ALA GLY LYS ASN VAL SEQRES 4 A 398 THR ARG MET VAL GLU GLN CYS LEU GLU PHE SER PRO ARG SEQRES 5 A 398 TYR ALA VAL MET ASP ASP GLU ALA SER ALA LYS LEU LEU SEQRES 6 A 398 LYS THR MET LEU GLN GLN GLN GLY SER ARG THR GLU VAL SEQRES 7 A 398 LEU SER GLY GLN GLN ALA ALA CYS ASP MET ALA ALA LEU SEQRES 8 A 398 GLU ASP VAL ASP GLN VAL MET ALA ALA ILE VAL GLY ALA SEQRES 9 A 398 ALA GLY LEU LEU PRO THR LEU ALA ALA ILE ARG ALA GLY SEQRES 10 A 398 LYS THR ILE LEU LEU ALA ASN LYS GLU SER LEU VAL THR SEQRES 11 A 398 CYS GLY ARG LEU PHE MET ASP ALA VAL LYS GLN SER LYS SEQRES 12 A 398 ALA GLN LEU LEU PRO VAL ASP SER GLU HIS ASN ALA ILE SEQRES 13 A 398 PHE GLN SER LEU PRO GLN PRO ILE GLN HIS ASN LEU GLY SEQRES 14 A 398 TYR ALA ASP LEU GLU GLN ASN GLY VAL VAL SER ILE LEU SEQRES 15 A 398 LEU THR GLY SER GLY GLY PRO PHE ARG GLU THR PRO LEU SEQRES 16 A 398 ARG ASP LEU ALA THR MET THR PRO ASP GLN ALA CYS ARG SEQRES 17 A 398 HIS PRO ASN TRP SER MET GLY ARG LYS ILE SER VAL ASP SEQRES 18 A 398 SER ALA THR MET MET ASN LYS GLY LEU GLU TYR ILE GLU SEQRES 19 A 398 ALA ARG TRP LEU PHE ASN ALA SER ALA SER GLN MET GLU SEQRES 20 A 398 VAL LEU ILE HIS PRO GLN SER VAL ILE HIS SER MET VAL SEQRES 21 A 398 ARG TYR GLN ASP GLY SER VAL LEU ALA GLN LEU GLY GLU SEQRES 22 A 398 PRO ASP MET ARG THR PRO ILE ALA HIS THR MET ALA TRP SEQRES 23 A 398 PRO ASN ARG VAL ASN SER GLY VAL LYS PRO LEU ASP PHE SEQRES 24 A 398 CYS LYS LEU SER ALA LEU THR PHE ALA ALA PRO ASP TYR SEQRES 25 A 398 ASP ARG TYR PRO CYS LEU LYS LEU ALA MET GLU ALA PHE SEQRES 26 A 398 GLU GLN GLY GLN ALA ALA THR THR ALA LEU ASN ALA ALA SEQRES 27 A 398 ASN GLU ILE THR VAL ALA ALA PHE LEU ALA GLN GLN ILE SEQRES 28 A 398 ARG PHE THR ASP ILE ALA ALA LEU ASN LEU SER VAL LEU SEQRES 29 A 398 GLU LYS MET ASP MET ARG GLU PRO GLN CYS VAL ASP ASP SEQRES 30 A 398 VAL LEU SER VAL ASP ALA ASN ALA ARG GLU VAL ALA ARG SEQRES 31 A 398 LYS GLU VAL MET ARG LEU ALA SER SEQRES 1 B 398 MET LYS GLN LEU THR ILE LEU GLY SER THR GLY SER ILE SEQRES 2 B 398 GLY CYS SER THR LEU ASP VAL VAL ARG HIS ASN PRO GLU SEQRES 3 B 398 HIS PHE ARG VAL VAL ALA LEU VAL ALA GLY LYS ASN VAL SEQRES 4 B 398 THR ARG MET VAL GLU GLN CYS LEU GLU PHE SER PRO ARG SEQRES 5 B 398 TYR ALA VAL MET ASP ASP GLU ALA SER ALA LYS LEU LEU SEQRES 6 B 398 LYS THR MET LEU GLN GLN GLN GLY SER ARG THR GLU VAL SEQRES 7 B 398 LEU SER GLY GLN GLN ALA ALA CYS ASP MET ALA ALA LEU SEQRES 8 B 398 GLU ASP VAL ASP GLN VAL MET ALA ALA ILE VAL GLY ALA SEQRES 9 B 398 ALA GLY LEU LEU PRO THR LEU ALA ALA ILE ARG ALA GLY SEQRES 10 B 398 LYS THR ILE LEU LEU ALA ASN LYS GLU SER LEU VAL THR SEQRES 11 B 398 CYS GLY ARG LEU PHE MET ASP ALA VAL LYS GLN SER LYS SEQRES 12 B 398 ALA GLN LEU LEU PRO VAL ASP SER GLU HIS ASN ALA ILE SEQRES 13 B 398 PHE GLN SER LEU PRO GLN PRO ILE GLN HIS ASN LEU GLY SEQRES 14 B 398 TYR ALA ASP LEU GLU GLN ASN GLY VAL VAL SER ILE LEU SEQRES 15 B 398 LEU THR GLY SER GLY GLY PRO PHE ARG GLU THR PRO LEU SEQRES 16 B 398 ARG ASP LEU ALA THR MET THR PRO ASP GLN ALA CYS ARG SEQRES 17 B 398 HIS PRO ASN TRP SER MET GLY ARG LYS ILE SER VAL ASP SEQRES 18 B 398 SER ALA THR MET MET ASN LYS GLY LEU GLU TYR ILE GLU SEQRES 19 B 398 ALA ARG TRP LEU PHE ASN ALA SER ALA SER GLN MET GLU SEQRES 20 B 398 VAL LEU ILE HIS PRO GLN SER VAL ILE HIS SER MET VAL SEQRES 21 B 398 ARG TYR GLN ASP GLY SER VAL LEU ALA GLN LEU GLY GLU SEQRES 22 B 398 PRO ASP MET ARG THR PRO ILE ALA HIS THR MET ALA TRP SEQRES 23 B 398 PRO ASN ARG VAL ASN SER GLY VAL LYS PRO LEU ASP PHE SEQRES 24 B 398 CYS LYS LEU SER ALA LEU THR PHE ALA ALA PRO ASP TYR SEQRES 25 B 398 ASP ARG TYR PRO CYS LEU LYS LEU ALA MET GLU ALA PHE SEQRES 26 B 398 GLU GLN GLY GLN ALA ALA THR THR ALA LEU ASN ALA ALA SEQRES 27 B 398 ASN GLU ILE THR VAL ALA ALA PHE LEU ALA GLN GLN ILE SEQRES 28 B 398 ARG PHE THR ASP ILE ALA ALA LEU ASN LEU SER VAL LEU SEQRES 29 B 398 GLU LYS MET ASP MET ARG GLU PRO GLN CYS VAL ASP ASP SEQRES 30 B 398 VAL LEU SER VAL ASP ALA ASN ALA ARG GLU VAL ALA ARG SEQRES 31 B 398 LYS GLU VAL MET ARG LEU ALA SER HET MN A1002 1 HET FOM A1001 11 HET MN B1002 1 HET FOM B1001 11 HETNAM MN MANGANESE (II) ION HETNAM FOM 3-[FORMYL(HYDROXY)AMINO]PROPYLPHOSPHONIC ACID HETSYN FOM FOSMIDOMYCIN FORMUL 3 MN 2(MN 2+) FORMUL 4 FOM 2(C4 H10 N O5 P) FORMUL 7 HOH *145(H2 O) HELIX 1 1 GLY A 11 ASN A 24 1 14 HELIX 2 2 ASN A 38 SER A 50 1 13 HELIX 3 3 ASP A 58 GLY A 73 1 16 HELIX 4 4 GLY A 81 ALA A 90 1 10 HELIX 5 5 GLY A 106 ALA A 116 1 11 HELIX 6 6 LYS A 125 THR A 130 1 6 HELIX 7 7 CYS A 131 LYS A 143 1 13 HELIX 8 8 ASP A 150 SER A 159 1 10 HELIX 9 9 PRO A 161 HIS A 166 1 6 HELIX 10 10 LEU A 173 ASN A 176 5 4 HELIX 11 11 THR A 202 ALA A 206 5 5 HELIX 12 12 GLY A 215 MET A 225 1 11 HELIX 13 13 MET A 225 ASN A 240 1 16 HELIX 14 14 MET A 276 TRP A 286 1 11 HELIX 15 15 TYR A 315 GLY A 328 1 14 HELIX 16 16 GLY A 328 GLN A 349 1 22 HELIX 17 17 THR A 354 LYS A 366 1 13 HELIX 18 18 ASP A 376 ARG A 395 1 20 HELIX 19 19 GLY B 11 HIS B 23 1 13 HELIX 20 20 ASN B 38 SER B 50 1 13 HELIX 21 21 ASP B 58 GLY B 73 1 16 HELIX 22 22 GLY B 81 LEU B 91 1 11 HELIX 23 23 GLY B 106 ALA B 116 1 11 HELIX 24 24 LYS B 125 THR B 130 1 6 HELIX 25 25 CYS B 131 LYS B 143 1 13 HELIX 26 26 ASP B 150 SER B 159 1 10 HELIX 27 27 PRO B 161 HIS B 166 1 6 HELIX 28 28 LEU B 173 ASN B 176 5 4 HELIX 29 29 GLY B 215 THR B 224 1 10 HELIX 30 30 MET B 225 ASN B 240 1 16 HELIX 31 31 MET B 276 TRP B 286 1 11 HELIX 32 32 TYR B 315 GLU B 326 1 12 HELIX 33 33 GLY B 328 GLN B 349 1 22 HELIX 34 34 THR B 354 LYS B 366 1 13 HELIX 35 35 CYS B 374 ARG B 395 1 22 SHEET 1 A 7 GLU A 77 SER A 80 0 SHEET 2 A 7 TYR A 53 MET A 56 1 N ALA A 54 O LEU A 79 SHEET 3 A 7 PHE A 28 VAL A 34 1 N LEU A 33 O TYR A 53 SHEET 4 A 7 LYS A 2 LEU A 7 1 N LEU A 4 O ARG A 29 SHEET 5 A 7 GLN A 96 ALA A 99 1 O MET A 98 N THR A 5 SHEET 6 A 7 THR A 119 LEU A 122 1 O THR A 119 N VAL A 97 SHEET 7 A 7 LEU A 146 PRO A 148 1 O LEU A 147 N ILE A 120 SHEET 1 B 8 MET A 246 ILE A 250 0 SHEET 2 B 8 VAL A 178 GLY A 185 1 N LEU A 183 O GLU A 247 SHEET 3 B 8 ILE A 256 TYR A 262 -1 O MET A 259 N LEU A 182 SHEET 4 B 8 VAL A 267 LEU A 271 -1 O LEU A 268 N VAL A 260 SHEET 5 B 8 VAL B 267 LEU B 271 -1 O VAL B 267 N LEU A 271 SHEET 6 B 8 ILE B 256 TYR B 262 -1 N VAL B 260 O LEU B 268 SHEET 7 B 8 VAL B 178 GLY B 185 -1 N LEU B 182 O MET B 259 SHEET 8 B 8 MET B 246 ILE B 250 1 O GLU B 247 N LEU B 183 SHEET 1 C 7 GLU B 77 SER B 80 0 SHEET 2 C 7 TYR B 53 MET B 56 1 N ALA B 54 O LEU B 79 SHEET 3 C 7 PHE B 28 VAL B 34 1 N LEU B 33 O TYR B 53 SHEET 4 C 7 LYS B 2 LEU B 7 1 N LEU B 4 O ARG B 29 SHEET 5 C 7 GLN B 96 ALA B 99 1 O MET B 98 N LEU B 7 SHEET 6 C 7 THR B 119 LEU B 122 1 O THR B 119 N VAL B 97 SHEET 7 C 7 GLN B 145 PRO B 148 1 O GLN B 145 N ILE B 120 LINK OD2 ASP A 150 MN MN A1002 1555 1555 2.22 LINK OE2 GLU A 152 MN MN A1002 1555 1555 2.24 LINK OE1 GLU A 231 MN MN A1002 1555 1555 2.21 LINK O2 FOM A1001 MN MN A1002 1555 1555 2.14 LINK O1 FOM A1001 MN MN A1002 1555 1555 2.40 LINK MN MN A1002 O HOH A1085 1555 1555 2.24 LINK OD2 ASP B 150 MN MN B1002 1555 1555 2.23 LINK OE2 GLU B 152 MN MN B1002 1555 1555 2.25 LINK OE1 GLU B 231 MN MN B1002 1555 1555 2.23 LINK O1 FOM B1001 MN MN B1002 1555 1555 2.30 LINK O2 FOM B1001 MN MN B1002 1555 1555 2.13 LINK MN MN B1002 O HOH B1064 1555 1555 2.23 CISPEP 1 TRP A 286 PRO A 287 0 -0.06 CISPEP 2 TRP B 286 PRO B 287 0 0.14 SITE 1 AC1 5 ASP A 150 GLU A 152 GLU A 231 FOM A1001 SITE 2 AC1 5 HOH A1085 SITE 1 AC2 5 ASP B 150 GLU B 152 GLU B 231 FOM B1001 SITE 2 AC2 5 HOH B1064 SITE 1 AC3 12 SER A 151 GLU A 152 GLY A 185 SER A 186 SITE 2 AC3 12 TRP A 212 SER A 222 ASN A 227 LYS A 228 SITE 3 AC3 12 GLU A 231 MET A 276 MN A1002 HOH A1085 SITE 1 AC4 12 SER B 151 GLU B 152 GLY B 185 SER B 186 SITE 2 AC4 12 TRP B 212 SER B 222 ASN B 227 LYS B 228 SITE 3 AC4 12 GLU B 231 MET B 276 MN B1002 HOH B1064 CRYST1 90.754 52.301 107.595 90.00 92.11 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011019 0.000000 0.000406 0.00000 SCALE2 0.000000 0.019120 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009300 0.00000