data_1OP2 # _entry.id 1OP2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1OP2 RCSB RCSB018525 WWPDB D_1000018525 # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1OP0 _pdbx_database_related.details 'The Crystal Structure of AaV-SP-I' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1OP2 _pdbx_database_status.recvd_initial_deposition_date 2003-03-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhu, Z.' 1 'Teng, M.' 2 'Niu, L.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Crystal Structures and Amidolytic Activities of Two Glycosylated Snake Venom Serine Proteinases' J.BIOL.CHEM. 280 10524 10529 2005 JBCHA3 US 0021-9258 0071 ? 15632114 10.1074/jbc.M412900200 1 ;Purification, N-terminal sequencing, partial characterization, crystallization and preliminary crystallographic analysis of two glycosylated serine proteinases from Agkistrodon acutus venom ; 'Acta Crystallogr.,Sect.D' 59 547 550 2003 ABCRE6 DK 0907-4449 0766 ? 12595722 10.1107/S0907444902023375 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhu, Z.' 1 ? primary 'Liang, Z.' 2 ? primary 'Zhang, T.' 3 ? primary 'Zhu, Z.' 4 ? primary 'Xu, W.' 5 ? primary 'Teng, M.' 6 ? primary 'Niu, L.' 7 ? 1 'Zhu, Z.' 8 ? 1 'Gong, P.' 9 ? 1 'Teng, M.' 10 ? 1 'Niu, L.' 11 ? # _cell.entry_id 1OP2 _cell.length_a 119.430 _cell.length_b 42.830 _cell.length_c 44.940 _cell.angle_alpha 90.00 _cell.angle_beta 99.61 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1OP2 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Venom serine proteinase' 25356.693 1 3.4.21.- ? ? ? 2 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 3 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 4 water nat water 18.015 143 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'snake venom serine proteinase, AaV-SP-I' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNN EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAE YRTLCAGIVQGGKDTCGGDSGGPLICNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP ; _entity_poly.pdbx_seq_one_letter_code_can ;VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNN EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAE YRTLCAGIVQGGKDTCGGDSGGPLICNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 ILE n 1 3 GLY n 1 4 GLY n 1 5 ASN n 1 6 GLU n 1 7 CYS n 1 8 ASP n 1 9 ILE n 1 10 ASN n 1 11 GLU n 1 12 HIS n 1 13 ARG n 1 14 PHE n 1 15 LEU n 1 16 VAL n 1 17 ALA n 1 18 PHE n 1 19 PHE n 1 20 ASN n 1 21 THR n 1 22 THR n 1 23 GLY n 1 24 PHE n 1 25 PHE n 1 26 CYS n 1 27 GLY n 1 28 GLY n 1 29 THR n 1 30 LEU n 1 31 ILE n 1 32 ASN n 1 33 PRO n 1 34 GLU n 1 35 TRP n 1 36 VAL n 1 37 VAL n 1 38 THR n 1 39 ALA n 1 40 ALA n 1 41 HIS n 1 42 CYS n 1 43 ASP n 1 44 SER n 1 45 THR n 1 46 ASN n 1 47 PHE n 1 48 GLN n 1 49 MET n 1 50 GLN n 1 51 LEU n 1 52 GLY n 1 53 VAL n 1 54 HIS n 1 55 SER n 1 56 LYS n 1 57 LYS n 1 58 VAL n 1 59 LEU n 1 60 ASN n 1 61 GLU n 1 62 ASP n 1 63 GLU n 1 64 GLN n 1 65 THR n 1 66 ARG n 1 67 ASN n 1 68 PRO n 1 69 LYS n 1 70 GLU n 1 71 LYS n 1 72 PHE n 1 73 ILE n 1 74 CYS n 1 75 PRO n 1 76 ASN n 1 77 LYS n 1 78 ASN n 1 79 ASN n 1 80 ASN n 1 81 GLU n 1 82 VAL n 1 83 LEU n 1 84 ASP n 1 85 LYS n 1 86 ASP n 1 87 ILE n 1 88 MET n 1 89 LEU n 1 90 ILE n 1 91 LYS n 1 92 LEU n 1 93 ASP n 1 94 LYS n 1 95 PRO n 1 96 ILE n 1 97 SER n 1 98 ASN n 1 99 SER n 1 100 LYS n 1 101 HIS n 1 102 ILE n 1 103 ALA n 1 104 PRO n 1 105 LEU n 1 106 SER n 1 107 LEU n 1 108 PRO n 1 109 SER n 1 110 SER n 1 111 PRO n 1 112 PRO n 1 113 SER n 1 114 VAL n 1 115 GLY n 1 116 SER n 1 117 VAL n 1 118 CYS n 1 119 ARG n 1 120 ILE n 1 121 MET n 1 122 GLY n 1 123 TRP n 1 124 GLY n 1 125 SER n 1 126 ILE n 1 127 THR n 1 128 PRO n 1 129 VAL n 1 130 LYS n 1 131 GLU n 1 132 THR n 1 133 PHE n 1 134 PRO n 1 135 ASP n 1 136 VAL n 1 137 PRO n 1 138 TYR n 1 139 CYS n 1 140 ALA n 1 141 ASN n 1 142 ILE n 1 143 ASN n 1 144 LEU n 1 145 LEU n 1 146 ASP n 1 147 HIS n 1 148 ALA n 1 149 VAL n 1 150 CYS n 1 151 GLN n 1 152 ALA n 1 153 GLY n 1 154 TYR n 1 155 PRO n 1 156 GLU n 1 157 LEU n 1 158 LEU n 1 159 ALA n 1 160 GLU n 1 161 TYR n 1 162 ARG n 1 163 THR n 1 164 LEU n 1 165 CYS n 1 166 ALA n 1 167 GLY n 1 168 ILE n 1 169 VAL n 1 170 GLN n 1 171 GLY n 1 172 GLY n 1 173 LYS n 1 174 ASP n 1 175 THR n 1 176 CYS n 1 177 GLY n 1 178 GLY n 1 179 ASP n 1 180 SER n 1 181 GLY n 1 182 GLY n 1 183 PRO n 1 184 LEU n 1 185 ILE n 1 186 CYS n 1 187 ASN n 1 188 GLY n 1 189 GLN n 1 190 PHE n 1 191 GLN n 1 192 GLY n 1 193 ILE n 1 194 VAL n 1 195 SER n 1 196 TYR n 1 197 GLY n 1 198 ALA n 1 199 HIS n 1 200 PRO n 1 201 CYS n 1 202 GLY n 1 203 GLN n 1 204 GLY n 1 205 PRO n 1 206 LYS n 1 207 PRO n 1 208 GLY n 1 209 ILE n 1 210 TYR n 1 211 THR n 1 212 ASN n 1 213 VAL n 1 214 PHE n 1 215 ASP n 1 216 TYR n 1 217 THR n 1 218 ASP n 1 219 TRP n 1 220 ILE n 1 221 GLN n 1 222 ARG n 1 223 ASN n 1 224 ILE n 1 225 ALA n 1 226 GLY n 1 227 ASN n 1 228 THR n 1 229 ASP n 1 230 ALA n 1 231 THR n 1 232 CYS n 1 233 PRO n 1 234 PRO n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name 'Chinese moccasin' _entity_src_nat.pdbx_organism_scientific 'Deinagkistrodon acutus' _entity_src_nat.pdbx_ncbi_taxonomy_id 36307 _entity_src_nat.genus Deinagkistrodon _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion 'venom gland' _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code VSP2_AGKAC _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;VIGGNECDINEHRFLVAFFNTTGFFCGGTLINPEWVVTAAHCDSTNFQMQLGVHSKKVLNEDEQTRNPKEKFICPNKNNN EVLDKDIMLIKLDKPISNSKHIAPLSLPSSPPSVGSVCRIMGWGSITPVKETFPDVPYCANINLLDHAVCQAGYPELLAE YRTLCAGIVQGGKDTCGGDSGGPLICNGQFQGIVSYGAHPCGQGPKPGIYTNVFDYTDWIQRNIAGNTDATCPP ; _struct_ref.pdbx_align_begin 25 _struct_ref.pdbx_db_accession Q9I8X1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1OP2 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 234 _struct_ref_seq.pdbx_seq_align_end_ins_code G _struct_ref_seq.pdbx_db_accession Q9I8X1 _struct_ref_seq.db_align_beg 25 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 258 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 16 _struct_ref_seq.pdbx_auth_seq_align_end 245 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1OP2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.09 _exptl_crystal.density_percent_sol 40.64 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH ? _exptl_crystal_grow.pdbx_details 'ammonium sulfate, PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 298 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'SEALED TUBE' _diffrn_source.type ? _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1OP2 _reflns.observed_criterion_sigma_I 0.00 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 20.00 _reflns.d_resolution_high 2.10 _reflns.number_obs 12259 _reflns.number_all 12259 _reflns.percent_possible_obs 92.3 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 8.3 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.10 _reflns_shell.d_res_low 2.15 _reflns_shell.percent_possible_all 79.1 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1OP2 _refine.ls_number_reflns_obs 11866 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 3881980.15 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 19.90 _refine.ls_d_res_high 2.10 _refine.ls_percent_reflns_obs 89.3 _refine.ls_R_factor_obs 0.165 _refine.ls_R_factor_all 0.169 _refine.ls_R_factor_R_work 0.165 _refine.ls_R_factor_R_free 0.211 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.3 _refine.ls_number_reflns_R_free 1222 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 20.3 _refine.aniso_B[1][1] -2.15 _refine.aniso_B[2][2] 6.62 _refine.aniso_B[3][3] -4.47 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.88 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.325442 _refine.solvent_model_param_bsol 45.9892 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1OP2 _refine_analyze.Luzzati_coordinate_error_obs 0.20 _refine_analyze.Luzzati_sigma_a_obs 0.17 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.26 _refine_analyze.Luzzati_sigma_a_free 0.25 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1776 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 19 _refine_hist.number_atoms_solvent 143 _refine_hist.number_atoms_total 1938 _refine_hist.d_res_high 2.10 _refine_hist.d_res_low 19.90 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 25.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.79 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.33 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.07 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.05 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.03 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.10 _refine_ls_shell.d_res_low 2.23 _refine_ls_shell.number_reflns_R_work 1578 _refine_ls_shell.R_factor_R_work 0.205 _refine_ls_shell.percent_reflns_obs 79.6 _refine_ls_shell.R_factor_R_free 0.254 _refine_ls_shell.R_factor_R_free_error 0.019 _refine_ls_shell.percent_reflns_R_free 10.2 _refine_ls_shell.number_reflns_R_free 179 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 CARBOHYDRATE.PARAM CARBOHYDRATE.TOP 'X-RAY DIFFRACTION' 4 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1OP2 _struct.title 'Crystal Structure of AaV-SP-II, a Glycosylated Snake Venom Serine Proteinase from Agkistrodon acutus' _struct.pdbx_descriptor 'Venom serine proteinase(E.C.3.4.21.-)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1OP2 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'snake venom, serine proteinase, glycoprotein, Agkistrodon acutus, hydrolase' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ALA A 39 ? ASP A 43 ? ALA A 55 ASP A 59 5 ? 5 HELX_P HELX_P2 2 ASP A 146 ? TYR A 154 ? ASP A 164 TYR A 172 1 ? 9 HELX_P HELX_P3 3 TYR A 216 ? GLY A 226 ? TYR A 234 GLY A 244 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 139 SG ? ? A CYS 22 A CYS 157 1_555 ? ? ? ? ? ? ? 2.028 ? ? disulf2 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 42 SG ? ? A CYS 42 A CYS 58 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf3 disulf ? ? A CYS 74 SG ? ? ? 1_555 A CYS 232 SG ? E A CYS 91 A CYS 245 1_555 ? ? ? ? ? ? ? 2.025 ? ? disulf4 disulf ? ? A CYS 118 SG ? ? ? 1_555 A CYS 186 SG ? ? A CYS 136 A CYS 201 1_555 ? ? ? ? ? ? ? 2.029 ? ? disulf5 disulf ? ? A CYS 150 SG ? ? ? 1_555 A CYS 165 SG ? ? A CYS 168 A CYS 182 1_555 ? ? ? ? ? ? ? 2.031 ? ? disulf6 disulf ? ? A CYS 176 SG ? ? ? 1_555 A CYS 201 SG ? ? A CYS 191 A CYS 220 1_555 ? ? ? ? ? ? ? 2.033 ? ? covale1 covale one ? A ASN 20 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 35 A NAG 301 1_555 ? ? ? ? ? ? ? 1.451 ? N-Glycosylation # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id HIS _struct_mon_prot_cis.label_seq_id 199 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id HIS _struct_mon_prot_cis.auth_seq_id 218 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 200 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 219 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.14 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASN A 5 ? GLU A 6 ? ASN A 20 GLU A 21 A 2 TYR A 138 ? LEU A 145 ? TYR A 156 LEU A 163 A 3 VAL A 117 ? GLY A 122 ? VAL A 135 GLY A 140 A 4 PRO A 183 ? CYS A 186 ? PRO A 198 CYS A 201 A 5 GLN A 189 ? TYR A 196 ? GLN A 208 TYR A 215 A 6 GLY A 208 ? ASN A 212 ? GLY A 226 ASN A 230 A 7 THR A 163 ? GLY A 167 ? THR A 180 GLY A 184 A 8 TYR A 138 ? LEU A 145 ? TYR A 156 LEU A 163 B 1 GLN A 64 ? ARG A 66 ? GLN A 81 ARG A 83 B 2 GLN A 48 ? LEU A 51 ? GLN A 65 LEU A 68 B 3 LEU A 15 ? ASN A 20 ? LEU A 30 ASN A 35 B 4 GLY A 23 ? ASN A 32 ? GLY A 39 ASN A 48 B 5 TRP A 35 ? THR A 38 ? TRP A 51 THR A 54 B 6 MET A 88 ? LEU A 92 ? MET A 104 LEU A 108 B 7 PRO A 68 ? ILE A 73 ? PRO A 85 ILE A 90 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 5 ? O ASN A 20 N CYS A 139 ? N CYS A 157 A 2 3 O ILE A 142 ? O ILE A 160 N CYS A 118 ? N CYS A 136 A 3 4 N MET A 121 ? N MET A 139 O PRO A 183 ? O PRO A 198 A 4 5 O CYS A 186 ? O CYS A 201 N GLN A 189 ? N GLN A 208 A 5 6 O TYR A 196 ? O TYR A 215 N ILE A 209 ? N ILE A 227 A 6 7 O TYR A 210 ? O TYR A 228 N LEU A 164 ? N LEU A 181 A 7 8 N GLY A 167 ? N GLY A 184 O ASN A 143 ? O ASN A 161 B 1 2 N ARG A 66 ? N ARG A 83 O MET A 49 ? O MET A 66 B 2 3 N GLN A 50 ? N GLN A 67 O ALA A 17 ? O ALA A 32 B 3 4 O ASN A 20 ? O ASN A 35 N GLY A 23 ? N GLY A 39 B 4 5 N ILE A 31 ? N ILE A 47 O TRP A 35 ? O TRP A 51 B 5 6 O THR A 38 ? O THR A 54 N MET A 88 ? N MET A 104 B 6 7 O LYS A 91 ? O LYS A 107 N LYS A 69 ? N LYS A 86 # _database_PDB_matrix.entry_id 1OP2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1OP2 _atom_sites.fract_transf_matrix[1][1] 0.008373 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001418 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.023348 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022569 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 16 16 VAL VAL A . n A 1 2 ILE 2 17 17 ILE ILE A . n A 1 3 GLY 3 18 18 GLY GLY A . n A 1 4 GLY 4 19 19 GLY GLY A . n A 1 5 ASN 5 20 20 ASN ASN A . n A 1 6 GLU 6 21 21 GLU GLU A . n A 1 7 CYS 7 22 22 CYS CYS A . n A 1 8 ASP 8 23 23 ASP ASP A . n A 1 9 ILE 9 24 24 ILE ILE A . n A 1 10 ASN 10 25 25 ASN ASN A . n A 1 11 GLU 11 26 26 GLU GLU A . n A 1 12 HIS 12 27 27 HIS HIS A . n A 1 13 ARG 13 28 28 ARG ARG A . n A 1 14 PHE 14 29 29 PHE PHE A . n A 1 15 LEU 15 30 30 LEU LEU A . n A 1 16 VAL 16 31 31 VAL VAL A . n A 1 17 ALA 17 32 32 ALA ALA A . n A 1 18 PHE 18 33 33 PHE PHE A . n A 1 19 PHE 19 34 34 PHE PHE A . n A 1 20 ASN 20 35 35 ASN ASN A . n A 1 21 THR 21 36 36 THR THR A . n A 1 22 THR 22 38 38 THR THR A . n A 1 23 GLY 23 39 39 GLY GLY A . n A 1 24 PHE 24 40 40 PHE PHE A . n A 1 25 PHE 25 41 41 PHE PHE A . n A 1 26 CYS 26 42 42 CYS CYS A . n A 1 27 GLY 27 43 43 GLY GLY A . n A 1 28 GLY 28 44 44 GLY GLY A . n A 1 29 THR 29 45 45 THR THR A . n A 1 30 LEU 30 46 46 LEU LEU A . n A 1 31 ILE 31 47 47 ILE ILE A . n A 1 32 ASN 32 48 48 ASN ASN A . n A 1 33 PRO 33 49 49 PRO PRO A . n A 1 34 GLU 34 50 50 GLU GLU A . n A 1 35 TRP 35 51 51 TRP TRP A . n A 1 36 VAL 36 52 52 VAL VAL A . n A 1 37 VAL 37 53 53 VAL VAL A . n A 1 38 THR 38 54 54 THR THR A . n A 1 39 ALA 39 55 55 ALA ALA A . n A 1 40 ALA 40 56 56 ALA ALA A . n A 1 41 HIS 41 57 57 HIS HIS A . n A 1 42 CYS 42 58 58 CYS CYS A . n A 1 43 ASP 43 59 59 ASP ASP A . n A 1 44 SER 44 60 60 SER SER A . n A 1 45 THR 45 62 62 THR THR A . n A 1 46 ASN 46 63 63 ASN ASN A . n A 1 47 PHE 47 64 64 PHE PHE A . n A 1 48 GLN 48 65 65 GLN GLN A . n A 1 49 MET 49 66 66 MET MET A . n A 1 50 GLN 50 67 67 GLN GLN A . n A 1 51 LEU 51 68 68 LEU LEU A . n A 1 52 GLY 52 69 69 GLY GLY A . n A 1 53 VAL 53 70 70 VAL VAL A . n A 1 54 HIS 54 71 71 HIS HIS A . n A 1 55 SER 55 72 72 SER SER A . n A 1 56 LYS 56 73 73 LYS LYS A . n A 1 57 LYS 57 74 74 LYS LYS A . n A 1 58 VAL 58 75 75 VAL VAL A . n A 1 59 LEU 59 76 76 LEU LEU A . n A 1 60 ASN 60 77 77 ASN ASN A . n A 1 61 GLU 61 78 78 GLU GLU A . n A 1 62 ASP 62 79 79 ASP ASP A . n A 1 63 GLU 63 80 80 GLU GLU A . n A 1 64 GLN 64 81 81 GLN GLN A . n A 1 65 THR 65 82 82 THR THR A . n A 1 66 ARG 66 83 83 ARG ARG A . n A 1 67 ASN 67 84 84 ASN ASN A . n A 1 68 PRO 68 85 85 PRO PRO A . n A 1 69 LYS 69 86 86 LYS LYS A . n A 1 70 GLU 70 87 87 GLU GLU A . n A 1 71 LYS 71 88 88 LYS LYS A . n A 1 72 PHE 72 89 89 PHE PHE A . n A 1 73 ILE 73 90 90 ILE ILE A . n A 1 74 CYS 74 91 91 CYS CYS A . n A 1 75 PRO 75 92 92 PRO PRO A . n A 1 76 ASN 76 93 93 ASN ASN A . n A 1 77 LYS 77 94 94 LYS LYS A . n A 1 78 ASN 78 95 95 ASN ASN A . n A 1 79 ASN 79 95 95 ASN ASN A A n A 1 80 ASN 80 96 96 ASN ASN A . n A 1 81 GLU 81 97 97 GLU GLU A . n A 1 82 VAL 82 98 98 VAL VAL A . n A 1 83 LEU 83 99 99 LEU LEU A . n A 1 84 ASP 84 100 100 ASP ASP A . n A 1 85 LYS 85 101 101 LYS LYS A . n A 1 86 ASP 86 102 102 ASP ASP A . n A 1 87 ILE 87 103 103 ILE ILE A . n A 1 88 MET 88 104 104 MET MET A . n A 1 89 LEU 89 105 105 LEU LEU A . n A 1 90 ILE 90 106 106 ILE ILE A . n A 1 91 LYS 91 107 107 LYS LYS A . n A 1 92 LEU 92 108 108 LEU LEU A . n A 1 93 ASP 93 109 109 ASP ASP A . n A 1 94 LYS 94 110 110 LYS LYS A . n A 1 95 PRO 95 111 111 PRO PRO A . n A 1 96 ILE 96 112 112 ILE ILE A . n A 1 97 SER 97 113 113 SER SER A . n A 1 98 ASN 98 114 114 ASN ASN A . n A 1 99 SER 99 115 115 SER SER A . n A 1 100 LYS 100 116 116 LYS LYS A . n A 1 101 HIS 101 117 117 HIS HIS A . n A 1 102 ILE 102 118 118 ILE ILE A . n A 1 103 ALA 103 119 119 ALA ALA A . n A 1 104 PRO 104 120 120 PRO PRO A . n A 1 105 LEU 105 121 121 LEU LEU A . n A 1 106 SER 106 122 122 SER SER A . n A 1 107 LEU 107 123 123 LEU LEU A . n A 1 108 PRO 108 124 124 PRO PRO A . n A 1 109 SER 109 125 125 SER SER A . n A 1 110 SER 110 127 127 SER SER A . n A 1 111 PRO 111 128 128 PRO PRO A . n A 1 112 PRO 112 129 129 PRO PRO A . n A 1 113 SER 113 131 131 SER SER A . n A 1 114 VAL 114 132 132 VAL VAL A . n A 1 115 GLY 115 133 133 GLY GLY A . n A 1 116 SER 116 134 134 SER SER A . n A 1 117 VAL 117 135 135 VAL VAL A . n A 1 118 CYS 118 136 136 CYS CYS A . n A 1 119 ARG 119 137 137 ARG ARG A . n A 1 120 ILE 120 138 138 ILE ILE A . n A 1 121 MET 121 139 139 MET MET A . n A 1 122 GLY 122 140 140 GLY GLY A . n A 1 123 TRP 123 141 141 TRP TRP A . n A 1 124 GLY 124 142 142 GLY GLY A . n A 1 125 SER 125 143 143 SER SER A . n A 1 126 ILE 126 144 144 ILE ILE A . n A 1 127 THR 127 145 145 THR THR A . n A 1 128 PRO 128 146 146 PRO PRO A . n A 1 129 VAL 129 147 147 VAL VAL A . n A 1 130 LYS 130 148 148 LYS LYS A . n A 1 131 GLU 131 149 149 GLU GLU A . n A 1 132 THR 132 150 150 THR THR A . n A 1 133 PHE 133 151 151 PHE PHE A . n A 1 134 PRO 134 152 152 PRO PRO A . n A 1 135 ASP 135 153 153 ASP ASP A . n A 1 136 VAL 136 154 154 VAL VAL A . n A 1 137 PRO 137 155 155 PRO PRO A . n A 1 138 TYR 138 156 156 TYR TYR A . n A 1 139 CYS 139 157 157 CYS CYS A . n A 1 140 ALA 140 158 158 ALA ALA A . n A 1 141 ASN 141 159 159 ASN ASN A . n A 1 142 ILE 142 160 160 ILE ILE A . n A 1 143 ASN 143 161 161 ASN ASN A . n A 1 144 LEU 144 162 162 LEU LEU A . n A 1 145 LEU 145 163 163 LEU LEU A . n A 1 146 ASP 146 164 164 ASP ASP A . n A 1 147 HIS 147 165 165 HIS HIS A . n A 1 148 ALA 148 166 166 ALA ALA A . n A 1 149 VAL 149 167 167 VAL VAL A . n A 1 150 CYS 150 168 168 CYS CYS A . n A 1 151 GLN 151 169 169 GLN GLN A . n A 1 152 ALA 152 170 170 ALA ALA A . n A 1 153 GLY 153 171 171 GLY GLY A . n A 1 154 TYR 154 172 172 TYR TYR A . n A 1 155 PRO 155 172 172 PRO PRO A A n A 1 156 GLU 156 173 173 GLU GLU A . n A 1 157 LEU 157 174 174 LEU LEU A . n A 1 158 LEU 158 175 175 LEU LEU A . n A 1 159 ALA 159 176 176 ALA ALA A . n A 1 160 GLU 160 177 177 GLU GLU A . n A 1 161 TYR 161 178 178 TYR TYR A . n A 1 162 ARG 162 179 179 ARG ARG A . n A 1 163 THR 163 180 180 THR THR A . n A 1 164 LEU 164 181 181 LEU LEU A . n A 1 165 CYS 165 182 182 CYS CYS A . n A 1 166 ALA 166 183 183 ALA ALA A . n A 1 167 GLY 167 184 184 GLY GLY A . n A 1 168 ILE 168 185 185 ILE ILE A . n A 1 169 VAL 169 186 186 VAL VAL A . n A 1 170 GLN 170 186 186 GLN GLN A A n A 1 171 GLY 171 186 186 GLY GLY A B n A 1 172 GLY 172 187 187 GLY GLY A . n A 1 173 LYS 173 188 188 LYS LYS A . n A 1 174 ASP 174 189 189 ASP ASP A . n A 1 175 THR 175 190 190 THR THR A . n A 1 176 CYS 176 191 191 CYS CYS A . n A 1 177 GLY 177 192 192 GLY GLY A . n A 1 178 GLY 178 193 193 GLY GLY A . n A 1 179 ASP 179 194 194 ASP ASP A . n A 1 180 SER 180 195 195 SER SER A . n A 1 181 GLY 181 196 196 GLY GLY A . n A 1 182 GLY 182 197 197 GLY GLY A . n A 1 183 PRO 183 198 198 PRO PRO A . n A 1 184 LEU 184 199 199 LEU LEU A . n A 1 185 ILE 185 200 200 ILE ILE A . n A 1 186 CYS 186 201 201 CYS CYS A . n A 1 187 ASN 187 202 202 ASN ASN A . n A 1 188 GLY 188 207 207 GLY GLY A . n A 1 189 GLN 189 208 208 GLN GLN A . n A 1 190 PHE 190 209 209 PHE PHE A . n A 1 191 GLN 191 210 210 GLN GLN A . n A 1 192 GLY 192 211 211 GLY GLY A . n A 1 193 ILE 193 212 212 ILE ILE A . n A 1 194 VAL 194 213 213 VAL VAL A . n A 1 195 SER 195 214 214 SER SER A . n A 1 196 TYR 196 215 215 TYR TYR A . n A 1 197 GLY 197 216 216 GLY GLY A . n A 1 198 ALA 198 217 217 ALA ALA A . n A 1 199 HIS 199 218 218 HIS HIS A . n A 1 200 PRO 200 219 219 PRO PRO A . n A 1 201 CYS 201 220 220 CYS CYS A . n A 1 202 GLY 202 221 221 GLY GLY A . n A 1 203 GLN 203 221 221 GLN GLN A A n A 1 204 GLY 204 222 222 GLY GLY A . n A 1 205 PRO 205 223 223 PRO PRO A . n A 1 206 LYS 206 224 224 LYS LYS A . n A 1 207 PRO 207 225 225 PRO PRO A . n A 1 208 GLY 208 226 226 GLY GLY A . n A 1 209 ILE 209 227 227 ILE ILE A . n A 1 210 TYR 210 228 228 TYR TYR A . n A 1 211 THR 211 229 229 THR THR A . n A 1 212 ASN 212 230 230 ASN ASN A . n A 1 213 VAL 213 231 231 VAL VAL A . n A 1 214 PHE 214 232 232 PHE PHE A . n A 1 215 ASP 215 233 233 ASP ASP A . n A 1 216 TYR 216 234 234 TYR TYR A . n A 1 217 THR 217 235 235 THR THR A . n A 1 218 ASP 218 236 236 ASP ASP A . n A 1 219 TRP 219 237 237 TRP TRP A . n A 1 220 ILE 220 238 238 ILE ILE A . n A 1 221 GLN 221 239 239 GLN GLN A . n A 1 222 ARG 222 240 240 ARG ARG A . n A 1 223 ASN 223 241 241 ASN ASN A . n A 1 224 ILE 224 242 242 ILE ILE A . n A 1 225 ALA 225 243 243 ALA ALA A . n A 1 226 GLY 226 244 244 GLY GLY A . n A 1 227 ASN 227 245 245 ASN ASN A . n A 1 228 THR 228 245 245 THR THR A A n A 1 229 ASP 229 245 245 ASP ASP A B n A 1 230 ALA 230 245 245 ALA ALA A C n A 1 231 THR 231 245 245 THR THR A D n A 1 232 CYS 232 245 245 CYS CYS A E n A 1 233 PRO 233 245 245 PRO PRO A F n A 1 234 PRO 234 245 245 PRO PRO A G n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NAG 1 301 301 NAG NAG A . C 3 SO4 1 401 401 SO4 SO4 A . D 4 HOH 1 601 601 HOH HOH A . D 4 HOH 2 602 602 HOH HOH A . D 4 HOH 3 603 603 HOH HOH A . D 4 HOH 4 604 604 HOH HOH A . D 4 HOH 5 605 605 HOH HOH A . D 4 HOH 6 606 606 HOH HOH A . D 4 HOH 7 607 607 HOH HOH A . D 4 HOH 8 608 608 HOH HOH A . D 4 HOH 9 609 609 HOH HOH A . D 4 HOH 10 610 610 HOH HOH A . D 4 HOH 11 611 611 HOH HOH A . D 4 HOH 12 612 612 HOH HOH A . D 4 HOH 13 613 613 HOH HOH A . D 4 HOH 14 614 614 HOH HOH A . D 4 HOH 15 615 615 HOH HOH A . D 4 HOH 16 616 616 HOH HOH A . D 4 HOH 17 617 617 HOH HOH A . D 4 HOH 18 618 618 HOH HOH A . D 4 HOH 19 619 619 HOH HOH A . D 4 HOH 20 620 620 HOH HOH A . D 4 HOH 21 621 621 HOH HOH A . D 4 HOH 22 622 622 HOH HOH A . D 4 HOH 23 623 623 HOH HOH A . D 4 HOH 24 624 624 HOH HOH A . D 4 HOH 25 625 625 HOH HOH A . D 4 HOH 26 626 626 HOH HOH A . D 4 HOH 27 627 627 HOH HOH A . D 4 HOH 28 628 628 HOH HOH A . D 4 HOH 29 629 629 HOH HOH A . D 4 HOH 30 630 630 HOH HOH A . D 4 HOH 31 631 631 HOH HOH A . D 4 HOH 32 632 632 HOH HOH A . D 4 HOH 33 633 633 HOH HOH A . D 4 HOH 34 634 634 HOH HOH A . D 4 HOH 35 635 635 HOH HOH A . D 4 HOH 36 636 636 HOH HOH A . D 4 HOH 37 637 637 HOH HOH A . D 4 HOH 38 638 638 HOH HOH A . D 4 HOH 39 639 639 HOH HOH A . D 4 HOH 40 640 640 HOH HOH A . D 4 HOH 41 641 641 HOH HOH A . D 4 HOH 42 642 642 HOH HOH A . D 4 HOH 43 643 643 HOH HOH A . D 4 HOH 44 644 644 HOH HOH A . D 4 HOH 45 645 645 HOH HOH A . D 4 HOH 46 646 646 HOH HOH A . D 4 HOH 47 647 647 HOH HOH A . D 4 HOH 48 648 648 HOH HOH A . D 4 HOH 49 649 649 HOH HOH A . D 4 HOH 50 650 650 HOH HOH A . D 4 HOH 51 651 651 HOH HOH A . D 4 HOH 52 652 652 HOH HOH A . D 4 HOH 53 653 653 HOH HOH A . D 4 HOH 54 654 654 HOH HOH A . D 4 HOH 55 655 655 HOH HOH A . D 4 HOH 56 656 656 HOH HOH A . D 4 HOH 57 657 657 HOH HOH A . D 4 HOH 58 658 658 HOH HOH A . D 4 HOH 59 659 659 HOH HOH A . D 4 HOH 60 660 660 HOH HOH A . D 4 HOH 61 661 661 HOH HOH A . D 4 HOH 62 662 662 HOH HOH A . D 4 HOH 63 663 663 HOH HOH A . D 4 HOH 64 665 665 HOH HOH A . D 4 HOH 65 666 666 HOH HOH A . D 4 HOH 66 667 667 HOH HOH A . D 4 HOH 67 668 668 HOH HOH A . D 4 HOH 68 670 670 HOH HOH A . D 4 HOH 69 671 671 HOH HOH A . D 4 HOH 70 672 672 HOH HOH A . D 4 HOH 71 673 673 HOH HOH A . D 4 HOH 72 674 674 HOH HOH A . D 4 HOH 73 675 675 HOH HOH A . D 4 HOH 74 676 676 HOH HOH A . D 4 HOH 75 677 677 HOH HOH A . D 4 HOH 76 678 678 HOH HOH A . D 4 HOH 77 679 679 HOH HOH A . D 4 HOH 78 680 680 HOH HOH A . D 4 HOH 79 681 681 HOH HOH A . D 4 HOH 80 682 682 HOH HOH A . D 4 HOH 81 683 683 HOH HOH A . D 4 HOH 82 684 684 HOH HOH A . D 4 HOH 83 685 685 HOH HOH A . D 4 HOH 84 686 686 HOH HOH A . D 4 HOH 85 687 687 HOH HOH A . D 4 HOH 86 689 689 HOH HOH A . D 4 HOH 87 690 690 HOH HOH A . D 4 HOH 88 691 691 HOH HOH A . D 4 HOH 89 692 692 HOH HOH A . D 4 HOH 90 693 693 HOH HOH A . D 4 HOH 91 694 694 HOH HOH A . D 4 HOH 92 695 695 HOH HOH A . D 4 HOH 93 696 696 HOH HOH A . D 4 HOH 94 697 697 HOH HOH A . D 4 HOH 95 700 700 HOH HOH A . D 4 HOH 96 701 701 HOH HOH A . D 4 HOH 97 703 703 HOH HOH A . D 4 HOH 98 704 704 HOH HOH A . D 4 HOH 99 705 705 HOH HOH A . D 4 HOH 100 706 706 HOH HOH A . D 4 HOH 101 707 707 HOH HOH A . D 4 HOH 102 709 709 HOH HOH A . D 4 HOH 103 710 710 HOH HOH A . D 4 HOH 104 711 711 HOH HOH A . D 4 HOH 105 712 712 HOH HOH A . D 4 HOH 106 713 713 HOH HOH A . D 4 HOH 107 715 715 HOH HOH A . D 4 HOH 108 716 716 HOH HOH A . D 4 HOH 109 717 717 HOH HOH A . D 4 HOH 110 718 718 HOH HOH A . D 4 HOH 111 720 720 HOH HOH A . D 4 HOH 112 721 721 HOH HOH A . D 4 HOH 113 722 722 HOH HOH A . D 4 HOH 114 723 723 HOH HOH A . D 4 HOH 115 724 724 HOH HOH A . D 4 HOH 116 725 725 HOH HOH A . D 4 HOH 117 726 726 HOH HOH A . D 4 HOH 118 727 727 HOH HOH A . D 4 HOH 119 728 728 HOH HOH A . D 4 HOH 120 730 730 HOH HOH A . D 4 HOH 121 731 731 HOH HOH A . D 4 HOH 122 732 732 HOH HOH A . D 4 HOH 123 733 733 HOH HOH A . D 4 HOH 124 734 734 HOH HOH A . D 4 HOH 125 735 735 HOH HOH A . D 4 HOH 126 737 737 HOH HOH A . D 4 HOH 127 740 740 HOH HOH A . D 4 HOH 128 742 742 HOH HOH A . D 4 HOH 129 743 743 HOH HOH A . D 4 HOH 130 744 744 HOH HOH A . D 4 HOH 131 745 745 HOH HOH A . D 4 HOH 132 749 749 HOH HOH A . D 4 HOH 133 750 750 HOH HOH A . D 4 HOH 134 751 751 HOH HOH A . D 4 HOH 135 752 752 HOH HOH A . D 4 HOH 136 753 753 HOH HOH A . D 4 HOH 137 754 754 HOH HOH A . D 4 HOH 138 757 757 HOH HOH A . D 4 HOH 139 758 758 HOH HOH A . D 4 HOH 140 759 759 HOH HOH A . D 4 HOH 141 762 762 HOH HOH A . D 4 HOH 142 763 763 HOH HOH A . D 4 HOH 143 765 765 HOH HOH A . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id A _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 20 _pdbx_struct_mod_residue.auth_asym_id A _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 35 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2004-05-25 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp 2 4 'Structure model' entity 3 4 'Structure model' pdbx_chem_comp_identifier 4 4 'Structure model' pdbx_entity_nonpoly 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_chem_comp.name' 2 4 'Structure model' '_chem_comp.type' 3 4 'Structure model' '_entity.pdbx_description' 4 4 'Structure model' '_pdbx_entity_nonpoly.name' 5 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 4 'Structure model' '_struct_conn.pdbx_role' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.0 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PHE A 41 ? ? -140.08 -12.65 2 1 HIS A 71 ? ? -125.43 -79.02 3 1 ASN A 93 ? ? -96.22 46.81 4 1 ASN A 95 A ? -69.45 6.43 5 1 ALA A 119 ? ? -170.70 138.46 6 1 VAL A 147 ? ? -103.56 -72.27 7 1 THR A 245 A ? 46.64 16.21 8 1 ALA A 245 C ? -44.48 150.72 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 3 'SULFATE ION' SO4 4 water HOH #