HEADER CELL ADHESION 04-MAR-03 1OP4 TITLE SOLUTION STRUCTURE OF NEURAL CADHERIN PRODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEURAL-CADHERIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: N-CADHERIN, CADHERIN-2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: CDH2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-19B KEYWDS BETA SANDWICH, CADHERIN-LIKE DOMAIN, CELL ADHESION EXPDTA SOLUTION NMR AUTHOR A.W.KOCH,A.FAROOQ,W.SHAN,L.ZENG,D.R.COLMAN,M.-M.ZHOU REVDAT 4 23-FEB-22 1OP4 1 REMARK SEQADV REVDAT 3 24-FEB-09 1OP4 1 VERSN REVDAT 2 25-MAY-04 1OP4 1 JRNL REVDAT 1 16-MAR-04 1OP4 0 JRNL AUTH A.W.KOCH,A.FAROOQ,W.SHAN,L.ZENG,D.R.COLMAN,M.-M.ZHOU JRNL TITL STRUCTURE OF THE NEURAL (N-) CADHERIN PRODOMAIN REVEALS A JRNL TITL 2 CADHERIN EXTRACELLULAR DOMAIN-LIKE FOLD WITHOUT ADHESIVE JRNL TITL 3 CHARACTERISTICS JRNL REF STRUCTURE V. 12 793 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 15130472 JRNL DOI 10.1016/J.STR.2004.02.034 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, ARIA REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OP4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018527. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1MM N-CADHERIN PRODOMAIN REMARK 210 (15N,13C), 50MM PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR, XWINNMR REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING, MOLECULAR DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 HIS A 2 REMARK 465 HIS A 3 REMARK 465 HIS A 4 REMARK 465 HIS A 5 REMARK 465 HIS A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 GLY A 14 REMARK 465 HIS A 15 REMARK 465 ILE A 16 REMARK 465 ASP A 17 REMARK 465 ASP A 18 REMARK 465 ASP A 19 REMARK 465 ASP A 20 REMARK 465 LYS A 21 REMARK 465 HIS A 22 REMARK 465 MET A 23 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASP A 82 H GLY A 85 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 25 31.52 -170.28 REMARK 500 GLU A 28 -78.77 -133.08 REMARK 500 ALA A 30 19.00 -150.75 REMARK 500 PRO A 37 33.70 -86.81 REMARK 500 ASP A 39 -159.21 -132.22 REMARK 500 PRO A 54 175.84 -54.18 REMARK 500 CYS A 63 -178.09 -174.11 REMARK 500 ASN A 64 -144.50 53.12 REMARK 500 LYS A 66 115.25 57.79 REMARK 500 ARG A 67 70.43 -156.91 REMARK 500 SER A 74 35.73 -159.35 REMARK 500 ALA A 77 -156.23 -61.32 REMARK 500 ARG A 91 135.38 61.52 REMARK 500 SER A 92 64.70 -108.59 REMARK 500 LEU A 95 71.91 51.60 REMARK 500 THR A 96 -80.59 -161.22 REMARK 500 GLU A 124 66.08 -117.53 REMARK 500 MET A 132 -67.42 -94.07 REMARK 500 GLU A 134 62.79 -161.87 REMARK 500 GLU A 137 34.16 -154.30 REMARK 500 ILE A 141 -67.69 -95.64 REMARK 500 PHE A 143 85.16 52.58 REMARK 500 PRO A 144 175.94 -57.04 REMARK 500 ARG A 145 54.53 -141.75 REMARK 500 LEU A 147 57.86 -154.02 REMARK 500 ARG A 156 20.78 -150.82 REMARK 500 REMARK 500 REMARK: NULL DBREF 1OP4 A 24 159 UNP P15116 CADH2_MOUSE 24 159 SEQADV 1OP4 GLY A 1 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 2 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 3 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 4 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 5 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 6 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 7 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 8 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 9 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 10 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 11 UNP P15116 EXPRESSION TAG SEQADV 1OP4 SER A 12 UNP P15116 EXPRESSION TAG SEQADV 1OP4 SER A 13 UNP P15116 EXPRESSION TAG SEQADV 1OP4 GLY A 14 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 15 UNP P15116 EXPRESSION TAG SEQADV 1OP4 ILE A 16 UNP P15116 EXPRESSION TAG SEQADV 1OP4 ASP A 17 UNP P15116 EXPRESSION TAG SEQADV 1OP4 ASP A 18 UNP P15116 EXPRESSION TAG SEQADV 1OP4 ASP A 19 UNP P15116 EXPRESSION TAG SEQADV 1OP4 ASP A 20 UNP P15116 EXPRESSION TAG SEQADV 1OP4 LYS A 21 UNP P15116 EXPRESSION TAG SEQADV 1OP4 HIS A 22 UNP P15116 EXPRESSION TAG SEQADV 1OP4 MET A 23 UNP P15116 EXPRESSION TAG SEQRES 1 A 159 GLY HIS HIS HIS HIS HIS HIS HIS HIS HIS HIS SER SER SEQRES 2 A 159 GLY HIS ILE ASP ASP ASP ASP LYS HIS MET GLU ALA SER SEQRES 3 A 159 GLY GLU ILE ALA LEU CYS LYS THR GLY PHE PRO GLU ASP SEQRES 4 A 159 VAL TYR SER ALA VAL LEU PRO LYS ASP VAL HIS GLU GLY SEQRES 5 A 159 GLN PRO LEU LEU ASN VAL LYS PHE SER ASN CYS ASN ARG SEQRES 6 A 159 LYS ARG LYS VAL GLN TYR GLU SER SER GLU PRO ALA ASP SEQRES 7 A 159 PHE LYS VAL ASP GLU ASP GLY THR VAL TYR ALA VAL ARG SEQRES 8 A 159 SER PHE PRO LEU THR ALA GLU GLN ALA LYS PHE LEU ILE SEQRES 9 A 159 TYR ALA GLN ASP LYS GLU THR GLN GLU LYS TRP GLN VAL SEQRES 10 A 159 ALA VAL ASN LEU SER ARG GLU PRO THR LEU THR GLU GLU SEQRES 11 A 159 PRO MET LYS GLU PRO HIS GLU ILE GLU GLU ILE VAL PHE SEQRES 12 A 159 PRO ARG GLN LEU ALA LYS HIS SER GLY ALA LEU GLN ARG SEQRES 13 A 159 GLN LYS ARG SHEET 1 A 4 VAL A 40 ALA A 43 0 SHEET 2 A 4 GLU A 113 LEU A 121 1 O ASN A 120 N TYR A 41 SHEET 3 A 4 ALA A 100 ASP A 108 -1 N ALA A 100 O LEU A 121 SHEET 4 A 4 VAL A 69 GLU A 72 -1 N GLN A 70 O GLN A 107 SHEET 1 B 3 LEU A 55 ASN A 57 0 SHEET 2 B 3 THR A 86 VAL A 90 -1 O VAL A 87 N LEU A 56 SHEET 3 B 3 ASP A 78 ASP A 82 -1 N ASP A 82 O THR A 86 SSBOND 1 CYS A 32 CYS A 63 1555 1555 2.02 CISPEP 1 PHE A 93 PRO A 94 0 -0.35 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000