HEADER TRANSFERASE, BIOSYNTHETIC PROTEIN 10-MAR-03 1OQM TITLE A 1:1 COMPLEX BETWEEN ALPHA-LACTALBUMIN AND BETA1,4- TITLE 2 GALACTOSYLTRANSFERASE IN THE PRESENCE OF UDP-N-ACETYL- TITLE 3 GALACTOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALPHA-LACTALBUMIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: RESIDUES 21-143; COMPND 5 SYNONYM: LACTOSE SYNTHASE B PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: BETA-1,4-GALACTOSYLTRANSFERASE; COMPND 9 CHAIN: B, D; COMPND 10 FRAGMENT: RESIDUES 57-329; COMPND 11 EC: 2.4.1.38; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: LALBA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17.1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 13 ORGANISM_COMMON: CATTLE; SOURCE 14 ORGANISM_TAXID: 9913; SOURCE 15 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 16 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 17 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 18 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 19 EXPRESSION_SYSTEM_PLASMID: PET23A KEYWDS ALPHA-LACTALBUMIN, BETA1,4-GALACTOSYLTRANSFERASE, UDP- KEYWDS 2 GALNAC, TRANSFERASE, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR B.RAMAKRISHNAN,P.K.QASBA REVDAT 2 24-FEB-09 1OQM 1 VERSN REVDAT 1 18-MAR-03 1OQM 0 SPRSDE 18-MAR-03 1OQM 1L7W JRNL AUTH B.RAMAKRISHNAN,P.K.QASBA JRNL TITL STRUCTURE-BASED DESIGN OF BETA JRNL TITL 2 1,4-GALACTOSYLTRANSFERASE I (BETA 4GAL-T1) WITH JRNL TITL 3 EQUALLY EFFICIENT JRNL TITL 4 N-ACETYLGALACTOSAMINYLTRANSFERASE ACTIVITY: POINT JRNL TITL 5 MUTATION BROADENS BETA 4GAL-T1 DONOR SPECIFICITY. JRNL REF J.BIOL.CHEM. V. 277 20833 2002 JRNL REFN ISSN 0021-9258 JRNL PMID 11916963 JRNL DOI 10.1074/JBC.M111183200 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.56 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.1 REMARK 3 NUMBER OF REFLECTIONS : 56106 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.200 REMARK 3 FREE R VALUE TEST SET COUNT : 5707 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.23 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 7881 REMARK 3 BIN R VALUE (WORKING SET) : 0.2720 REMARK 3 BIN FREE R VALUE : 0.3190 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.20 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 900 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.011 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6396 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 629 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.10000 REMARK 3 B22 (A**2) : 8.29000 REMARK 3 B33 (A**2) : -8.39000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.32 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.50 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.93 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.430 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.250 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.200 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.190 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 52.96 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : UDPG_PG.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : ION.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : UDPG_PG.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OQM COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-MAR-03. REMARK 100 THE RCSB ID CODE IS RCSB018570. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-MAR-01 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56106 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.9 REMARK 200 DATA REDUNDANCY : 2.150 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06000 REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.17 REMARK 200 COMPLETENESS FOR SHELL (%) : 76.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.35900 REMARK 200 FOR SHELL : 2.010 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: SODIUM CITRATE, PEG4000, PH 5.5, REMARK 280 LIQUID DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.83850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: MOLECULES A & B AND C & D FORM A 1:1 COMPLEX BETWEEN REMARK 300 ALPHA-LACTALBUMIN AND BETA1,4-GALACTOSYLTRANSFERASE REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA B 117 REMARK 465 SER B 118 REMARK 465 MET B 119 REMARK 465 THR B 120 REMARK 465 GLY B 121 REMARK 465 GLY B 122 REMARK 465 GLN B 123 REMARK 465 GLN B 124 REMARK 465 MET B 125 REMARK 465 GLY B 126 REMARK 465 ARG B 127 REMARK 465 GLY B 128 REMARK 465 SER B 129 REMARK 465 SER B 130 REMARK 465 ALA D 117 REMARK 465 SER D 118 REMARK 465 MET D 119 REMARK 465 THR D 120 REMARK 465 GLY D 121 REMARK 465 GLY D 122 REMARK 465 GLN D 123 REMARK 465 GLN D 124 REMARK 465 MET D 125 REMARK 465 GLY D 126 REMARK 465 ARG D 127 REMARK 465 GLY D 128 REMARK 465 SER D 129 REMARK 465 SER D 130 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 44 -70.01 -103.76 REMARK 500 ASN A 45 74.55 -170.27 REMARK 500 SER A 69 151.49 -47.38 REMARK 500 ASN A 71 54.50 38.70 REMARK 500 ASN B 150 -72.96 -103.23 REMARK 500 ARG B 189 114.68 -169.90 REMARK 500 ASP B 260 2.21 -62.31 REMARK 500 ASP C 44 -133.40 -107.80 REMARK 500 PHE C 66 71.57 -104.83 REMARK 500 LYS C 122 121.09 -27.33 REMARK 500 ARG D 189 120.09 -175.99 REMARK 500 ASP D 260 1.82 -66.03 REMARK 500 ASN D 353 39.48 -141.57 REMARK 500 GLU D 384 138.05 -173.27 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PG4 B 813 REMARK 610 PG4 A 814 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 124 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS A 79 O REMARK 620 2 ASP A 82 OD1 97.3 REMARK 620 3 GLU A 84 O 170.3 78.2 REMARK 620 4 ASP A 87 OD1 95.6 145.1 83.7 REMARK 620 5 ASP A 88 OD2 104.1 135.0 84.9 71.6 REMARK 620 6 HOH A 925 O 79.2 74.4 91.3 76.4 148.0 REMARK 620 7 HOH A 903 O 84.4 74.2 102.3 139.5 69.2 142.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 254 OD2 REMARK 620 2 UD2 B 404 O2B 174.0 REMARK 620 3 UD2 B 404 O1A 96.8 78.1 REMARK 620 4 HOH B 989 O 89.1 88.3 95.1 REMARK 620 5 HIS B 347 NE2 82.8 100.3 92.4 169.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 124 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 LYS C 79 O REMARK 620 2 ASP C 82 OD1 91.7 REMARK 620 3 GLU C 84 O 162.5 81.9 REMARK 620 4 ASP C 87 OD1 96.9 147.3 80.5 REMARK 620 5 ASP C 88 OD2 106.8 138.2 88.4 68.4 REMARK 620 6 HOH C 923 O 84.3 72.7 78.2 76.9 144.5 REMARK 620 7 HOH C 904 O 84.8 74.7 108.9 137.3 70.3 145.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN D 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP D 254 OD2 REMARK 620 2 MET D 344 SD 97.6 REMARK 620 3 UD2 D 528 O2B 177.5 83.3 REMARK 620 4 UD2 D 528 O1A 96.3 166.0 82.8 REMARK 620 5 HOH D 927 O 92.9 85.0 84.9 92.2 REMARK 620 6 HIS D 347 NE2 79.1 93.1 103.1 91.5 171.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 124 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 124 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 403 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN D 403 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD2 B 404 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UD2 D 528 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 B 813 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PG4 A 814 REMARK 999 REMARK 999 THE N-TERMINAL OF CHAINS B AND D CONTAINS REMARK 999 A 13 AMINO ACID TAG. DBREF 1OQM A 1 123 UNP P29752 LALBA_MOUSE 21 143 DBREF 1OQM B 130 402 UNP P08037 B4GT1_BOVIN 130 402 DBREF 1OQM C 1 123 UNP P29752 LALBA_MOUSE 21 143 DBREF 1OQM D 130 402 UNP P08037 B4GT1_BOVIN 130 402 SEQADV 1OQM ALA B 117 UNP P08037 SEE REMARK 999 SEQADV 1OQM SER B 118 UNP P08037 SEE REMARK 999 SEQADV 1OQM MET B 119 UNP P08037 SEE REMARK 999 SEQADV 1OQM THR B 120 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLY B 121 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLY B 122 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLN B 123 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLN B 124 UNP P08037 SEE REMARK 999 SEQADV 1OQM MET B 125 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLY B 126 UNP P08037 SEE REMARK 999 SEQADV 1OQM ARG B 127 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLY B 128 UNP P08037 SEE REMARK 999 SEQADV 1OQM SER B 129 UNP P08037 SEE REMARK 999 SEQADV 1OQM ALA D 117 UNP P08037 SEE REMARK 999 SEQADV 1OQM SER D 118 UNP P08037 SEE REMARK 999 SEQADV 1OQM MET D 119 UNP P08037 SEE REMARK 999 SEQADV 1OQM THR D 120 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLY D 121 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLY D 122 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLN D 123 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLN D 124 UNP P08037 SEE REMARK 999 SEQADV 1OQM MET D 125 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLY D 126 UNP P08037 SEE REMARK 999 SEQADV 1OQM ARG D 127 UNP P08037 SEE REMARK 999 SEQADV 1OQM GLY D 128 UNP P08037 SEE REMARK 999 SEQADV 1OQM SER D 129 UNP P08037 SEE REMARK 999 SEQRES 1 A 123 THR GLU LEU THR LYS CYS LYS VAL SER HIS ALA ILE LYS SEQRES 2 A 123 ASP ILE ASP GLY TYR GLN GLY ILE SER LEU LEU GLU TRP SEQRES 3 A 123 ALA CYS VAL LEU PHE HIS THR SER GLY TYR ASP THR GLN SEQRES 4 A 123 ALA VAL VAL ASN ASP ASN GLY SER THR GLU TYR GLY LEU SEQRES 5 A 123 PHE GLN ILE SER ASP ARG PHE TRP CYS LYS SER SER GLU SEQRES 6 A 123 PHE PRO GLU SER GLU ASN ILE CYS GLY ILE SER CYS ASP SEQRES 7 A 123 LYS LEU LEU ASP ASP GLU LEU ASP ASP ASP ILE ALA CYS SEQRES 8 A 123 ALA LYS LYS ILE LEU ALA ILE LYS GLY ILE ASP TYR TRP SEQRES 9 A 123 LYS ALA TYR LYS PRO MET CYS SER GLU LYS LEU GLU GLN SEQRES 10 A 123 TRP ARG CYS GLU LYS PRO SEQRES 1 B 286 ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SER SEQRES 2 B 286 SER LEU THR ALA CYS PRO GLU GLU SER PRO LEU LEU VAL SEQRES 3 B 286 GLY PRO MET LEU ILE GLU PHE ASN ILE PRO VAL ASP LEU SEQRES 4 B 286 LYS LEU VAL GLU GLN GLN ASN PRO LYS VAL LYS LEU GLY SEQRES 5 B 286 GLY ARG TYR THR PRO MET ASP CYS ILE SER PRO HIS LYS SEQRES 6 B 286 VAL ALA ILE ILE ILE PRO PHE ARG ASN ARG GLN GLU HIS SEQRES 7 B 286 LEU LYS TYR TRP LEU TYR TYR LEU HIS PRO ILE LEU GLN SEQRES 8 B 286 ARG GLN GLN LEU ASP TYR GLY ILE TYR VAL ILE ASN GLN SEQRES 9 B 286 ALA GLY GLU SER MET PHE ASN ARG ALA LYS LEU LEU ASN SEQRES 10 B 286 VAL GLY PHE LYS GLU ALA LEU LYS ASP TYR ASP TYR ASN SEQRES 11 B 286 CYS PHE VAL PHE SER ASP VAL ASP LEU ILE PRO MET ASN SEQRES 12 B 286 ASP HIS ASN THR TYR ARG CYS PHE SER GLN PRO ARG HIS SEQRES 13 B 286 ILE SER VAL ALA MET ASP LYS PHE GLY PHE SER LEU PRO SEQRES 14 B 286 TYR VAL GLN TYR PHE GLY GLY VAL SER ALA LEU SER LYS SEQRES 15 B 286 GLN GLN PHE LEU SER ILE ASN GLY PHE PRO ASN ASN TYR SEQRES 16 B 286 TRP GLY TRP GLY GLY GLU ASP ASP ASP ILE TYR ASN ARG SEQRES 17 B 286 LEU ALA PHE ARG GLY MET SER VAL SER ARG PRO ASN ALA SEQRES 18 B 286 VAL ILE GLY LYS CYS ARG MET ILE ARG HIS SER ARG ASP SEQRES 19 B 286 LYS LYS ASN GLU PRO ASN PRO GLN ARG PHE ASP ARG ILE SEQRES 20 B 286 ALA HIS THR LYS GLU THR MET LEU SER ASP GLY LEU ASN SEQRES 21 B 286 SER LEU THR TYR MET VAL LEU GLU VAL GLN ARG TYR PRO SEQRES 22 B 286 LEU TYR THR LYS ILE THR VAL ASP ILE GLY THR PRO SER SEQRES 1 C 123 THR GLU LEU THR LYS CYS LYS VAL SER HIS ALA ILE LYS SEQRES 2 C 123 ASP ILE ASP GLY TYR GLN GLY ILE SER LEU LEU GLU TRP SEQRES 3 C 123 ALA CYS VAL LEU PHE HIS THR SER GLY TYR ASP THR GLN SEQRES 4 C 123 ALA VAL VAL ASN ASP ASN GLY SER THR GLU TYR GLY LEU SEQRES 5 C 123 PHE GLN ILE SER ASP ARG PHE TRP CYS LYS SER SER GLU SEQRES 6 C 123 PHE PRO GLU SER GLU ASN ILE CYS GLY ILE SER CYS ASP SEQRES 7 C 123 LYS LEU LEU ASP ASP GLU LEU ASP ASP ASP ILE ALA CYS SEQRES 8 C 123 ALA LYS LYS ILE LEU ALA ILE LYS GLY ILE ASP TYR TRP SEQRES 9 C 123 LYS ALA TYR LYS PRO MET CYS SER GLU LYS LEU GLU GLN SEQRES 10 C 123 TRP ARG CYS GLU LYS PRO SEQRES 1 D 286 ALA SER MET THR GLY GLY GLN GLN MET GLY ARG GLY SER SEQRES 2 D 286 SER LEU THR ALA CYS PRO GLU GLU SER PRO LEU LEU VAL SEQRES 3 D 286 GLY PRO MET LEU ILE GLU PHE ASN ILE PRO VAL ASP LEU SEQRES 4 D 286 LYS LEU VAL GLU GLN GLN ASN PRO LYS VAL LYS LEU GLY SEQRES 5 D 286 GLY ARG TYR THR PRO MET ASP CYS ILE SER PRO HIS LYS SEQRES 6 D 286 VAL ALA ILE ILE ILE PRO PHE ARG ASN ARG GLN GLU HIS SEQRES 7 D 286 LEU LYS TYR TRP LEU TYR TYR LEU HIS PRO ILE LEU GLN SEQRES 8 D 286 ARG GLN GLN LEU ASP TYR GLY ILE TYR VAL ILE ASN GLN SEQRES 9 D 286 ALA GLY GLU SER MET PHE ASN ARG ALA LYS LEU LEU ASN SEQRES 10 D 286 VAL GLY PHE LYS GLU ALA LEU LYS ASP TYR ASP TYR ASN SEQRES 11 D 286 CYS PHE VAL PHE SER ASP VAL ASP LEU ILE PRO MET ASN SEQRES 12 D 286 ASP HIS ASN THR TYR ARG CYS PHE SER GLN PRO ARG HIS SEQRES 13 D 286 ILE SER VAL ALA MET ASP LYS PHE GLY PHE SER LEU PRO SEQRES 14 D 286 TYR VAL GLN TYR PHE GLY GLY VAL SER ALA LEU SER LYS SEQRES 15 D 286 GLN GLN PHE LEU SER ILE ASN GLY PHE PRO ASN ASN TYR SEQRES 16 D 286 TRP GLY TRP GLY GLY GLU ASP ASP ASP ILE TYR ASN ARG SEQRES 17 D 286 LEU ALA PHE ARG GLY MET SER VAL SER ARG PRO ASN ALA SEQRES 18 D 286 VAL ILE GLY LYS CYS ARG MET ILE ARG HIS SER ARG ASP SEQRES 19 D 286 LYS LYS ASN GLU PRO ASN PRO GLN ARG PHE ASP ARG ILE SEQRES 20 D 286 ALA HIS THR LYS GLU THR MET LEU SER ASP GLY LEU ASN SEQRES 21 D 286 SER LEU THR TYR MET VAL LEU GLU VAL GLN ARG TYR PRO SEQRES 22 D 286 LEU TYR THR LYS ILE THR VAL ASP ILE GLY THR PRO SER HET CA A 124 1 HET CA C 124 1 HET MN B 403 1 HET MN D 403 1 HET UD2 B 404 39 HET UD2 D 528 39 HET PG4 B 813 7 HET PG4 A 814 7 HETNAM CA CALCIUM ION HETNAM MN MANGANESE (II) ION HETNAM UD2 URIDINE-DIPHOSPHATE-N-ACETYLGALACTOSAMINE HETNAM PG4 TETRAETHYLENE GLYCOL HETSYN UD2 (2R,3R,4R,5R,6R)-3-(ACETYLAMINO)-4,5-DIHYDROXY-6- HETSYN 2 UD2 (HYDROXYMETHYL)TETRAHYDRO-2H-PYRAN-2-YL [(2R,3S,4R, HETSYN 3 UD2 5R)-5-(2,4-DIOXO-3,4-DIHYDROPYRIMIDIN-1(2H)-YL)-3,4- HETSYN 4 UD2 DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETSYN 5 UD2 DIPHOSPHATE FORMUL 5 CA 2(CA 2+) FORMUL 7 MN 2(MN 2+) FORMUL 9 UD2 2(C17 H27 N3 O17 P2) FORMUL 11 PG4 2(C8 H18 O5) FORMUL 13 HOH *629(H2 O) HELIX 1 1 THR A 4 ILE A 12 1 9 HELIX 2 2 LYS A 13 ASP A 16 5 4 HELIX 3 3 GLY A 17 ILE A 21 5 5 HELIX 4 4 SER A 22 GLY A 35 1 14 HELIX 5 5 SER A 76 LEU A 81 5 6 HELIX 6 6 LEU A 85 LYS A 99 1 15 HELIX 7 7 GLY A 100 TRP A 104 5 5 HELIX 8 8 ALA A 106 CYS A 111 1 6 HELIX 9 9 LEU A 115 ARG A 119 5 5 HELIX 10 10 ASP B 154 GLN B 161 1 8 HELIX 11 11 ARG B 191 GLN B 209 1 19 HELIX 12 12 ASN B 227 TYR B 243 1 17 HELIX 13 13 LYS B 279 GLY B 281 5 3 HELIX 14 14 LYS B 298 ILE B 304 1 7 HELIX 15 15 GLY B 316 ARG B 328 1 13 HELIX 16 16 GLN B 358 ALA B 364 1 7 HELIX 17 17 HIS B 365 MET B 370 1 6 HELIX 18 18 GLY B 374 LEU B 378 5 5 HELIX 19 19 THR C 4 ILE C 12 1 9 HELIX 20 20 LYS C 13 ASP C 16 5 4 HELIX 21 21 GLY C 17 ILE C 21 5 5 HELIX 22 22 SER C 22 GLY C 35 1 14 HELIX 23 23 SER C 76 ASP C 82 5 7 HELIX 24 24 LEU C 85 LYS C 99 1 15 HELIX 25 25 GLY C 100 TRP C 104 5 5 HELIX 26 26 ALA C 106 CYS C 111 1 6 HELIX 27 27 LEU C 115 ARG C 119 5 5 HELIX 28 28 ASP D 154 ASN D 162 1 9 HELIX 29 29 ARG D 191 GLN D 209 1 19 HELIX 30 30 ASN D 227 LEU D 240 1 14 HELIX 31 31 LYS D 279 GLY D 281 5 3 HELIX 32 32 LYS D 298 ILE D 304 1 7 HELIX 33 33 GLY D 316 ARG D 328 1 13 HELIX 34 34 GLN D 358 ALA D 364 1 7 HELIX 35 35 HIS D 365 MET D 370 1 6 HELIX 36 36 GLY D 374 LEU D 378 5 5 SHEET 1 A 3 VAL A 41 ASN A 43 0 SHEET 2 A 3 THR A 48 TYR A 50 -1 O GLU A 49 N VAL A 42 SHEET 3 A 3 ILE A 55 SER A 56 -1 O ILE A 55 N TYR A 50 SHEET 1 B 6 ARG B 271 HIS B 272 0 SHEET 2 B 6 VAL B 293 SER B 297 -1 O ALA B 295 N ARG B 271 SHEET 3 B 6 CYS B 247 SER B 251 -1 N PHE B 250 O SER B 294 SHEET 4 B 6 LYS B 181 PHE B 188 1 N ILE B 185 O VAL B 249 SHEET 5 B 6 ASP B 212 GLN B 220 1 O GLY B 214 N ILE B 184 SHEET 6 B 6 ARG B 170 TYR B 171 -1 N TYR B 171 O TYR B 213 SHEET 1 C 7 ARG B 271 HIS B 272 0 SHEET 2 C 7 VAL B 293 SER B 297 -1 O ALA B 295 N ARG B 271 SHEET 3 C 7 CYS B 247 SER B 251 -1 N PHE B 250 O SER B 294 SHEET 4 C 7 LYS B 181 PHE B 188 1 N ILE B 185 O VAL B 249 SHEET 5 C 7 ASP B 212 GLN B 220 1 O GLY B 214 N ILE B 184 SHEET 6 C 7 THR B 392 ASP B 397 1 O THR B 392 N VAL B 217 SHEET 7 C 7 MET B 381 ARG B 387 -1 N GLN B 386 O LYS B 393 SHEET 1 D 3 LEU B 255 PRO B 257 0 SHEET 2 D 3 LYS B 341 MET B 344 -1 O ARG B 343 N ILE B 256 SHEET 3 D 3 ALA B 276 MET B 277 1 N ALA B 276 O CYS B 342 SHEET 1 E 3 VAL C 41 ASN C 43 0 SHEET 2 E 3 THR C 48 TYR C 50 -1 O GLU C 49 N VAL C 42 SHEET 3 E 3 ILE C 55 SER C 56 -1 O ILE C 55 N TYR C 50 SHEET 1 F 6 ARG D 271 HIS D 272 0 SHEET 2 F 6 VAL D 293 SER D 297 -1 O ALA D 295 N ARG D 271 SHEET 3 F 6 CYS D 247 SER D 251 -1 N PHE D 250 O SER D 294 SHEET 4 F 6 LYS D 181 PHE D 188 1 N ILE D 185 O VAL D 249 SHEET 5 F 6 ASP D 212 GLN D 220 1 O TYR D 216 N ILE D 186 SHEET 6 F 6 ARG D 170 TYR D 171 -1 N TYR D 171 O TYR D 213 SHEET 1 G 7 ARG D 271 HIS D 272 0 SHEET 2 G 7 VAL D 293 SER D 297 -1 O ALA D 295 N ARG D 271 SHEET 3 G 7 CYS D 247 SER D 251 -1 N PHE D 250 O SER D 294 SHEET 4 G 7 LYS D 181 PHE D 188 1 N ILE D 185 O VAL D 249 SHEET 5 G 7 ASP D 212 GLN D 220 1 O TYR D 216 N ILE D 186 SHEET 6 G 7 THR D 392 ASP D 397 1 O THR D 392 N VAL D 217 SHEET 7 G 7 MET D 381 ARG D 387 -1 N GLN D 386 O LYS D 393 SHEET 1 H 3 LEU D 255 PRO D 257 0 SHEET 2 H 3 LYS D 341 MET D 344 -1 O ARG D 343 N ILE D 256 SHEET 3 H 3 ALA D 276 MET D 277 1 N ALA D 276 O CYS D 342 SSBOND 1 CYS A 6 CYS A 120 1555 1555 2.03 SSBOND 2 CYS A 28 CYS A 111 1555 1555 2.05 SSBOND 3 CYS A 61 CYS A 77 1555 1555 2.04 SSBOND 4 CYS A 73 CYS A 91 1555 1555 2.03 SSBOND 5 CYS B 134 CYS B 176 1555 1555 2.04 SSBOND 6 CYS B 247 CYS B 266 1555 1555 2.04 SSBOND 7 CYS C 6 CYS C 120 1555 1555 2.03 SSBOND 8 CYS C 28 CYS C 111 1555 1555 2.04 SSBOND 9 CYS C 61 CYS C 77 1555 1555 2.03 SSBOND 10 CYS C 73 CYS C 91 1555 1555 2.04 SSBOND 11 CYS D 134 CYS D 176 1555 1555 2.04 SSBOND 12 CYS D 247 CYS D 266 1555 1555 2.03 LINK O LYS A 79 CA CA A 124 1555 1555 2.34 LINK OD1 ASP A 82 CA CA A 124 1555 1555 2.51 LINK O GLU A 84 CA CA A 124 1555 1555 2.19 LINK OD1 ASP A 87 CA CA A 124 1555 1555 2.32 LINK OD2 ASP A 88 CA CA A 124 1555 1555 2.40 LINK OD2 ASP B 254 MN MN B 403 1555 1555 2.21 LINK O LYS C 79 CA CA C 124 1555 1555 2.34 LINK OD1 ASP C 82 CA CA C 124 1555 1555 2.44 LINK O GLU C 84 CA CA C 124 1555 1555 2.40 LINK OD1 ASP C 87 CA CA C 124 1555 1555 2.35 LINK OD2 ASP C 88 CA CA C 124 1555 1555 2.46 LINK OD2 ASP D 254 MN MN D 403 1555 1555 2.33 LINK SD MET D 344 MN MN D 403 1555 1555 2.87 LINK CA CA A 124 O HOH A 925 1555 1555 2.41 LINK CA CA A 124 O HOH A 903 1555 1555 2.59 LINK CA CA C 124 O HOH C 923 1555 1555 2.42 LINK CA CA C 124 O HOH C 904 1555 1555 2.43 LINK MN MN B 403 O2B UD2 B 404 1555 1555 2.26 LINK MN MN B 403 O1A UD2 B 404 1555 1555 2.17 LINK MN MN B 403 O HOH B 989 1555 1555 2.46 LINK MN MN D 403 O2B UD2 D 528 1555 1555 2.22 LINK MN MN D 403 O1A UD2 D 528 1555 1555 2.10 LINK MN MN D 403 O HOH D 927 1555 1555 2.08 LINK MN MN B 403 NE2 HIS B 347 1555 1555 2.35 LINK MN MN D 403 NE2 HIS D 347 1555 1555 2.28 SITE 1 AC1 7 LYS A 79 ASP A 82 GLU A 84 ASP A 87 SITE 2 AC1 7 ASP A 88 HOH A 903 HOH A 925 SITE 1 AC2 7 LYS C 79 ASP C 82 GLU C 84 ASP C 87 SITE 2 AC2 7 ASP C 88 HOH C 904 HOH C 923 SITE 1 AC3 5 ASP B 254 MET B 344 HIS B 347 UD2 B 404 SITE 2 AC3 5 HOH B 989 SITE 1 AC4 5 ASP D 254 MET D 344 HIS D 347 UD2 D 528 SITE 2 AC4 5 HOH D 927 SITE 1 AC5 25 PRO B 187 PHE B 188 ARG B 189 ARG B 191 SITE 2 AC5 25 PHE B 226 ARG B 228 ASP B 252 VAL B 253 SITE 3 AC5 25 ASP B 254 LEU B 255 MET B 277 TYR B 289 SITE 4 AC5 25 GLY B 292 TRP B 314 GLY B 315 GLU B 317 SITE 5 AC5 25 ASP B 318 HIS B 347 ASP B 350 MN B 403 SITE 6 AC5 25 HOH B 919 HOH B 966 HOH B1284 HOH B1297 SITE 7 AC5 25 HOH B1465 SITE 1 AC6 29 PRO D 187 PHE D 188 ARG D 189 ARG D 191 SITE 2 AC6 29 PHE D 226 ARG D 228 ASP D 252 VAL D 253 SITE 3 AC6 29 ASP D 254 LEU D 255 MET D 277 TYR D 289 SITE 4 AC6 29 GLY D 291 GLY D 292 TRP D 314 GLY D 315 SITE 5 AC6 29 GLU D 317 MET D 344 HIS D 347 ASP D 350 SITE 6 AC6 29 ASN D 353 MN D 403 HOH D 914 HOH D 927 SITE 7 AC6 29 HOH D 945 HOH D 965 HOH D 979 HOH D1061 SITE 8 AC6 29 HOH D1105 SITE 1 AC7 3 PRO B 179 HOH B1264 HOH B1539 SITE 1 AC8 6 LYS A 114 LEU A 115 GLU A 116 GLN A 117 SITE 2 AC8 6 HOH A1202 HOH A1506 CRYST1 57.471 95.677 100.581 90.00 101.40 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017400 0.000000 0.003509 0.00000 SCALE2 0.000000 0.010452 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010142 0.00000