HEADER BIOSYNTHETIC PROTEIN 23-MAR-03 1OTW TITLE CRYSTAL STRUCTURE OF PQQC IN COMPLEX WITH PQQ AND A PUTATIVE H2O2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: COENZYME PQQ SYNTHESIS PROTEIN C; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: KLEBSIELLA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 573; SOURCE 4 GENE: PQQC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET101 KEYWDS PQQC, PQQ BIOSYNTHESIS, OXIDASE, COMPLEX, HYDROGEN PEROXIDE, KEYWDS 2 BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR O.T.MAGNUSSON,H.TOYAMA,M.SAEKI,A.ROJAS,J.C.REED,R.C.LIDDINGTON, AUTHOR 2 J.P.KLINMAN,R.SCHWARZENBACHER REVDAT 7 16-AUG-23 1OTW 1 REMARK REVDAT 6 27-OCT-21 1OTW 1 REMARK SEQADV REVDAT 5 31-JAN-18 1OTW 1 REMARK REVDAT 4 13-JUL-11 1OTW 1 VERSN REVDAT 3 24-FEB-09 1OTW 1 VERSN REVDAT 2 03-AUG-04 1OTW 1 JRNL REVDAT 1 11-MAY-04 1OTW 0 JRNL AUTH O.T.MAGNUSSON,H.TOYAMA,M.SAEKI,A.ROJAS,J.C.REED, JRNL AUTH 2 R.C.LIDDINGTON,J.P.KLINMAN,R.SCHWARZENBACHER JRNL TITL QUINONE BIOGENESIS: STRUCTURE AND MECHANISM OF PQQC, THE JRNL TITL 2 FINAL CATALYST IN THE PRODUCTION OF PYRROLOQUINOLINE JRNL TITL 3 QUINONE. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 7913 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 15148379 JRNL DOI 10.1073/PNAS.0402640101 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 70.71 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.4 REMARK 3 NUMBER OF REFLECTIONS : 24745 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1266 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1779 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2690 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3350 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4154 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 52 REMARK 3 SOLVENT ATOMS : 129 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 37.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.75000 REMARK 3 B22 (A**2) : -4.65000 REMARK 3 B33 (A**2) : 7.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.375 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.250 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.184 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.710 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.932 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4327 ; 0.017 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3759 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5879 ; 1.649 ; 1.929 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8691 ; 0.820 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 506 ; 6.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 602 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4880 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 962 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1102 ; 0.238 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 4386 ; 0.255 ; 0.300 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2311 ; 0.092 ; 0.500 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 298 ; 0.196 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 20 ; 0.206 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): 130 ; 0.307 ; 0.300 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.196 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2536 ; 1.277 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4056 ; 2.159 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1791 ; 1.176 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1823 ; 1.854 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 4 A 254 REMARK 3 RESIDUE RANGE : B 4 B 254 REMARK 3 ORIGIN FOR THE GROUP (A): 33.9642 41.7790 17.2553 REMARK 3 T TENSOR REMARK 3 T11: 0.0810 T22: 0.0367 REMARK 3 T33: 0.0313 T12: 0.0447 REMARK 3 T13: -0.0054 T23: 0.0163 REMARK 3 L TENSOR REMARK 3 L11: 0.9133 L22: -0.1986 REMARK 3 L33: -0.0137 L12: 0.1947 REMARK 3 L13: -0.0322 L23: -0.0826 REMARK 3 S TENSOR REMARK 3 S11: 0.0092 S12: -0.2447 S13: -0.2596 REMARK 3 S21: 0.0526 S22: -0.0117 S23: 0.0738 REMARK 3 S31: 0.0211 S32: -0.0386 S33: 0.0025 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1OTW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-MAR-03. REMARK 100 THE DEPOSITION ID IS D_1000018664. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-JAN-03 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26011 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 70.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.5 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16200 REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 89.1 REMARK 200 DATA REDUNDANCY IN SHELL : 2.70 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.42300 REMARK 200 FOR SHELL : 1.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: 1OTV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.61 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.4M AMMONIUM SULPHATE, CACODYLATE , REMARK 280 PH 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 25K, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 36.75200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 59.20950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 36.75200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 59.20950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TERNARY COMPLEX OF PQQC,PQQ AND H2O2. THE BIOLOGICAL REMARK 300 ASSEMBLY IS A HOMO DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5870 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 HIS A 88 CG ND1 CD2 CE1 NE2 REMARK 480 GLU A 90 CG CD OE1 OE2 REMARK 480 GLN A 163 CB CG CD OE1 NE2 REMARK 480 GLU A 202 CB CG CD OE1 OE2 REMARK 480 LYS A 242 CB CG CD CE NZ REMARK 480 GLN B 10 CG CD OE1 NE2 REMARK 480 GLU B 14 CG CD OE1 OE2 REMARK 480 ARG B 40 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 41 CG CD CE NZ REMARK 480 GLN B 72 CB CG CD OE1 NE2 REMARK 480 HIS B 88 CG ND1 CD2 CE1 NE2 REMARK 480 GLU B 90 CG CD OE1 OE2 REMARK 480 ARG B 115 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 157 CG CD NE CZ NH1 NH2 REMARK 480 GLN B 163 CG CD OE1 NE2 REMARK 480 LYS B 169 CG CD CE NZ REMARK 480 GLU B 170 CG CD OE1 OE2 REMARK 480 ARG B 177 CG CD NE CZ NH1 NH2 REMARK 480 ARG B 179 CB CG CD NE CZ NH1 NH2 REMARK 480 ARG B 185 CB CG CD NE CZ NH1 NH2 REMARK 480 LYS B 195 CG CD CE NZ REMARK 480 LYS B 242 CB CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 17 NE - CZ - NH1 ANGL. DEV. = 5.0 DEGREES REMARK 500 ARG A 17 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 ASP A 37 CB - CG - OD2 ANGL. DEV. = 5.7 DEGREES REMARK 500 ASP B 83 CB - CG - OD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 HIS B 88 N - CA - C ANGL. DEV. = 20.7 DEGREES REMARK 500 ASP B 186 CB - CG - OD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 ASP B 223 CB - CG - OD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 6 109.47 -28.96 REMARK 500 SER A 87 -71.13 -96.31 REMARK 500 GLU A 90 40.51 -109.28 REMARK 500 PRO B 9 -28.11 -35.57 REMARK 500 SER B 107 -169.79 -74.42 REMARK 500 GLU B 114 19.82 51.42 REMARK 500 LEU B 145 9.88 -68.14 REMARK 500 LYS B 169 149.61 -34.83 REMARK 500 ARG B 233 43.86 -144.88 REMARK 500 ARG B 249 83.76 -63.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 AUTHOR DETERMINED THE SECONDARY STRUCTURE REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQQ A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PQQ B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEO A 600 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEO B 601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OTV RELATED DB: PDB REMARK 900 NATIVE PQQC DBREF 1OTW A 0 254 UNP P27505 PQQC_KLEPN 1 251 DBREF 1OTW B 0 254 UNP P27505 PQQC_KLEPN 1 251 SEQADV 1OTW HIS A 0 UNP P27505 CLONING ARTIFACT SEQADV 1OTW ASP A 21 UNP P27505 ALA 21 ENGINEERED MUTATION SEQADV 1OTW LEU A 252 UNP P27505 EXPRESSION TAG SEQADV 1OTW GLU A 253 UNP P27505 EXPRESSION TAG SEQADV 1OTW HIS A 254 UNP P27505 EXPRESSION TAG SEQADV 1OTW HIS B 0 UNP P27505 CLONING ARTIFACT SEQADV 1OTW ASP B 21 UNP P27505 ALA 21 ENGINEERED MUTATION SEQADV 1OTW LEU B 252 UNP P27505 EXPRESSION TAG SEQADV 1OTW GLU B 253 UNP P27505 EXPRESSION TAG SEQADV 1OTW HIS B 254 UNP P27505 EXPRESSION TAG SEQRES 1 A 255 HIS MET LEU ILE THR ASP THR LEU SER PRO GLN ALA PHE SEQRES 2 A 255 GLU GLU ALA LEU ARG ALA LYS GLY ASP PHE TYR HIS ILE SEQRES 3 A 255 HIS HIS PRO TYR HIS ILE ALA MET HIS ASN GLY ASP ALA SEQRES 4 A 255 THR ARG LYS GLN ILE GLN GLY TRP VAL ALA ASN ARG PHE SEQRES 5 A 255 TYR TYR GLN THR THR ILE PRO LEU LYS ASP ALA ALA ILE SEQRES 6 A 255 MET ALA ASN CYS PRO ASP ALA GLN THR ARG ARG LYS TRP SEQRES 7 A 255 VAL GLN ARG ILE LEU ASP HIS ASP GLY SER HIS GLY GLU SEQRES 8 A 255 ASP GLY GLY ILE GLU ALA TRP LEU ARG LEU GLY GLU ALA SEQRES 9 A 255 VAL GLY LEU SER ARG ASP ASP LEU LEU SER GLU ARG HIS SEQRES 10 A 255 VAL LEU PRO GLY VAL ARG PHE ALA VAL ASP ALA TYR LEU SEQRES 11 A 255 ASN PHE ALA ARG ARG ALA CYS TRP GLN GLU ALA ALA CYS SEQRES 12 A 255 SER SER LEU THR GLU LEU PHE ALA PRO GLN ILE HIS GLN SEQRES 13 A 255 SER ARG LEU ASP SER TRP PRO GLN HIS TYR PRO TRP ILE SEQRES 14 A 255 LYS GLU GLU GLY TYR PHE TYR PHE ARG SER ARG LEU SER SEQRES 15 A 255 GLN ALA ASN ARG ASP VAL GLU HIS GLY LEU ALA LEU ALA SEQRES 16 A 255 LYS ALA TYR CYS ASP SER ALA GLU LYS GLN ASN ARG MET SEQRES 17 A 255 LEU GLU ILE LEU GLN PHE LYS LEU ASP ILE LEU TRP SER SEQRES 18 A 255 MET LEU ASP ALA MET THR MET ALA TYR ALA LEU GLN ARG SEQRES 19 A 255 PRO PRO TYR HIS THR VAL THR ASP LYS ALA ALA TRP HIS SEQRES 20 A 255 THR THR ARG LEU VAL LEU GLU HIS SEQRES 1 B 255 HIS MET LEU ILE THR ASP THR LEU SER PRO GLN ALA PHE SEQRES 2 B 255 GLU GLU ALA LEU ARG ALA LYS GLY ASP PHE TYR HIS ILE SEQRES 3 B 255 HIS HIS PRO TYR HIS ILE ALA MET HIS ASN GLY ASP ALA SEQRES 4 B 255 THR ARG LYS GLN ILE GLN GLY TRP VAL ALA ASN ARG PHE SEQRES 5 B 255 TYR TYR GLN THR THR ILE PRO LEU LYS ASP ALA ALA ILE SEQRES 6 B 255 MET ALA ASN CYS PRO ASP ALA GLN THR ARG ARG LYS TRP SEQRES 7 B 255 VAL GLN ARG ILE LEU ASP HIS ASP GLY SER HIS GLY GLU SEQRES 8 B 255 ASP GLY GLY ILE GLU ALA TRP LEU ARG LEU GLY GLU ALA SEQRES 9 B 255 VAL GLY LEU SER ARG ASP ASP LEU LEU SER GLU ARG HIS SEQRES 10 B 255 VAL LEU PRO GLY VAL ARG PHE ALA VAL ASP ALA TYR LEU SEQRES 11 B 255 ASN PHE ALA ARG ARG ALA CYS TRP GLN GLU ALA ALA CYS SEQRES 12 B 255 SER SER LEU THR GLU LEU PHE ALA PRO GLN ILE HIS GLN SEQRES 13 B 255 SER ARG LEU ASP SER TRP PRO GLN HIS TYR PRO TRP ILE SEQRES 14 B 255 LYS GLU GLU GLY TYR PHE TYR PHE ARG SER ARG LEU SER SEQRES 15 B 255 GLN ALA ASN ARG ASP VAL GLU HIS GLY LEU ALA LEU ALA SEQRES 16 B 255 LYS ALA TYR CYS ASP SER ALA GLU LYS GLN ASN ARG MET SEQRES 17 B 255 LEU GLU ILE LEU GLN PHE LYS LEU ASP ILE LEU TRP SER SEQRES 18 B 255 MET LEU ASP ALA MET THR MET ALA TYR ALA LEU GLN ARG SEQRES 19 B 255 PRO PRO TYR HIS THR VAL THR ASP LYS ALA ALA TRP HIS SEQRES 20 B 255 THR THR ARG LEU VAL LEU GLU HIS HET PQQ A 500 24 HET PEO A 600 2 HET PQQ B 501 24 HET PEO B 601 2 HETNAM PQQ PYRROLOQUINOLINE QUINONE HETNAM PEO HYDROGEN PEROXIDE FORMUL 3 PQQ 2(C14 H6 N2 O8) FORMUL 4 PEO 2(H2 O2) FORMUL 7 HOH *129(H2 O) HELIX 1 1 SER A 8 TYR A 23 1 16 HELIX 2 3 TYR A 29 ASN A 35 1 7 HELIX 3 4 THR A 39 ASN A 67 1 29 HELIX 4 5 ASP A 70 GLY A 86 1 17 HELIX 5 6 GLY A 92 VAL A 104 1 13 HELIX 6 7 SER A 107 SER A 113 1 7 HELIX 7 8 LEU A 118 ARG A 134 1 17 HELIX 8 9 GLN A 138 SER A 143 1 6 HELIX 9 10 SER A 144 LEU A 148 5 5 HELIX 10 11 PHE A 149 TYR A 165 1 17 HELIX 11 12 LYS A 169 GLY A 172 5 4 HELIX 12 13 TYR A 173 CYS A 198 1 26 HELIX 13 14 SER A 200 ALA A 230 1 31 HELIX 14 15 SER B 8 TYR B 23 1 16 HELIX 15 17 TYR B 29 ASN B 35 1 7 HELIX 16 18 THR B 39 THR B 55 1 17 HELIX 17 19 THR B 56 ASN B 67 1 12 HELIX 18 20 ASP B 70 VAL B 78 1 9 HELIX 19 21 VAL B 78 GLY B 86 1 9 HELIX 20 22 ILE B 94 ALA B 103 1 10 HELIX 21 23 ARG B 108 SER B 113 1 6 HELIX 22 24 LEU B 118 ARG B 134 1 17 HELIX 23 25 GLN B 138 SER B 143 1 6 HELIX 24 26 SER B 144 LEU B 148 5 5 HELIX 25 27 PHE B 149 TYR B 165 1 17 HELIX 26 28 LYS B 169 GLY B 172 5 4 HELIX 27 29 TYR B 173 CYS B 198 1 26 HELIX 28 30 SER B 200 ALA B 230 1 31 SITE 1 AC1 18 TYR A 23 HIS A 24 ARG A 50 TYR A 53 SITE 2 AC1 18 GLN A 54 LYS A 60 HIS A 84 TYR A 128 SITE 3 AC1 18 SER A 144 THR A 146 ILE A 153 HIS A 154 SITE 4 AC1 18 ARG A 157 TYR A 175 ARG A 179 LYS A 214 SITE 5 AC1 18 PEO A 600 HOH A 601 SITE 1 AC2 16 TYR B 23 HIS B 24 ARG B 50 TYR B 53 SITE 2 AC2 16 GLN B 54 LYS B 60 HIS B 84 TYR B 128 SITE 3 AC2 16 SER B 144 THR B 146 ILE B 153 HIS B 154 SITE 4 AC2 16 TYR B 175 LYS B 214 PEO B 601 HOH B 602 SITE 1 AC3 5 ALA A 150 HIS A 154 ARG A 179 ALA A 183 SITE 2 AC3 5 PQQ A 500 SITE 1 AC4 4 ALA B 150 HIS B 154 ALA B 183 PQQ B 501 CRYST1 73.504 118.419 69.996 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013605 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008445 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014287 0.00000