HEADER OXIDOREDUCTASE ACTIVATOR 25-MAR-03 1OV3 TITLE STRUCTURE OF THE P22PHOX-P47PHOX COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: NEUTROPHIL CYTOSOL FACTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 156-285; COMPND 5 SYNONYM: NCF-1, NEUTROPHIL NADPH OXIDASE FACTOR 1, 47 KDA NEUTROPHIL COMPND 6 OXIDASE FACTOR, P47-PHOX, NCF-47K, 47 KDA AUTOSOMAL CHRONIC COMPND 7 GRANULOMATOUS DISEASE PROTEIN; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: FLAVOCYTOCHROME B558 ALPHA POLYPEPTIDE; COMPND 11 CHAIN: C, D; COMPND 12 FRAGMENT: RESIDUES 149-166; COMPND 13 SYNONYM: P22 PHAGOCYTE B-CYTOCHROME, NEUTROPHIL CYTOCHROME B, 22 KDA COMPND 14 POLYPEPTIDE, P22-PHOX, P22PHOX, CYTOCHROME B558, ALPHA CHAIN, COMPND 15 CYTOCHROME B-245 ALPHA-SUBUNIT LIGHT CHAIN, SUPEROXIDE- GENERATING COMPND 16 NADPH OXIDASE LIGHT CHAIN SUBUNIT; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NCF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX-6P1; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 OTHER_DETAILS: PEPTIDE SYNTHESIS KEYWDS P47PHOX, P22PHOX, NADPH OXIDASE, COMPLEX, OXIDOREDUCTASE ACTIVATOR EXPDTA X-RAY DIFFRACTION AUTHOR Y.GROEMPING,K.LAPOUGE,S.J.SMERDON,K.RITTINGER REVDAT 4 20-SEP-23 1OV3 1 REMARK REVDAT 3 21-DEC-22 1OV3 1 SEQADV REVDAT 2 24-FEB-09 1OV3 1 VERSN REVDAT 1 20-MAY-03 1OV3 0 JRNL AUTH Y.GROEMPING,K.LAPOUGE,S.J.SMERDON,K.RITTINGER JRNL TITL MOLECULAR BASIS OF PHOSPHORYLATION-INDUCED ACTIVATION OF THE JRNL TITL 2 NADPH OXIDASE JRNL REF CELL(CAMBRIDGE,MASS.) V. 113 343 2003 JRNL REFN ISSN 0092-8674 JRNL PMID 12732142 JRNL DOI 10.1016/S0092-8674(03)00314-3 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.0 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 30873 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.232 REMARK 3 R VALUE (WORKING SET) : 0.229 REMARK 3 FREE R VALUE : 0.275 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1647 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2117 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE SET COUNT : 103 REMARK 3 BIN FREE R VALUE : 0.3290 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2221 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 207 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.22 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.15000 REMARK 3 B22 (A**2) : 5.08000 REMARK 3 B33 (A**2) : -2.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.143 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.142 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.342 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.910 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2293 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3130 ; 1.258 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 278 ; 3.710 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 421 ;15.728 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 329 ; 0.086 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1776 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 977 ; 0.235 ; 0.300 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 278 ; 0.194 ; 0.500 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 61 ; 0.206 ; 0.300 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.293 ; 0.500 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1420 ; 0.679 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2303 ; 1.181 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 873 ; 1.592 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 827 ; 2.450 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 156 A 199 REMARK 3 RESIDUE RANGE : B 200 B 217 REMARK 3 RESIDUE RANGE : D 150 D 160 REMARK 3 ORIGIN FOR THE GROUP (A): 56.8450 44.1170 36.5630 REMARK 3 T TENSOR REMARK 3 T11: 0.1197 T22: 0.0634 REMARK 3 T33: 0.1845 T12: -0.0293 REMARK 3 T13: 0.0111 T23: 0.0384 REMARK 3 L TENSOR REMARK 3 L11: 3.0988 L22: 2.1850 REMARK 3 L33: 8.4075 L12: 0.9313 REMARK 3 L13: -1.7151 L23: 0.7922 REMARK 3 S TENSOR REMARK 3 S11: -0.0101 S12: 0.3558 S13: 0.2320 REMARK 3 S21: 0.1205 S22: 0.1075 S23: 0.1768 REMARK 3 S31: 0.1036 S32: -0.2099 S33: -0.0974 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 200 A 219 REMARK 3 RESIDUE RANGE : B 158 B 199 REMARK 3 RESIDUE RANGE : D 150 D 160 REMARK 3 ORIGIN FOR THE GROUP (A): 77.3700 42.2910 56.8790 REMARK 3 T TENSOR REMARK 3 T11: 0.1363 T22: 0.0202 REMARK 3 T33: 0.1279 T12: -0.0096 REMARK 3 T13: 0.0040 T23: -0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.2111 L22: 2.6371 REMARK 3 L33: 6.2139 L12: -0.6008 REMARK 3 L13: 0.7940 L23: -0.4182 REMARK 3 S TENSOR REMARK 3 S11: -0.0143 S12: 0.0017 S13: -0.0324 REMARK 3 S21: -0.1857 S22: -0.0226 S23: -0.0505 REMARK 3 S31: 0.1486 S32: -0.0394 S33: 0.0369 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 223 B 282 REMARK 3 ORIGIN FOR THE GROUP (A): 45.5400 44.4380 17.4630 REMARK 3 T TENSOR REMARK 3 T11: 0.1608 T22: 0.0347 REMARK 3 T33: 0.2134 T12: -0.0742 REMARK 3 T13: 0.0160 T23: -0.0177 REMARK 3 L TENSOR REMARK 3 L11: 4.4685 L22: 1.0400 REMARK 3 L33: 5.2470 L12: -0.3530 REMARK 3 L13: -1.3399 L23: 0.4410 REMARK 3 S TENSOR REMARK 3 S11: 0.0063 S12: -0.0786 S13: 0.4279 REMARK 3 S21: -0.0950 S22: 0.0557 S23: 0.0125 REMARK 3 S31: 0.0288 S32: -0.2827 S33: -0.0620 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 220 A 282 REMARK 3 ORIGIN FOR THE GROUP (A): 88.2050 41.6870 75.1800 REMARK 3 T TENSOR REMARK 3 T11: 0.1704 T22: 0.0413 REMARK 3 T33: 0.1577 T12: 0.0510 REMARK 3 T13: -0.0100 T23: -0.0248 REMARK 3 L TENSOR REMARK 3 L11: 3.1847 L22: 2.6380 REMARK 3 L33: 5.4002 L12: 0.2881 REMARK 3 L13: -0.7458 L23: -0.4573 REMARK 3 S TENSOR REMARK 3 S11: 0.0044 S12: -0.1680 S13: 0.1194 REMARK 3 S21: 0.2809 S22: 0.0423 S23: -0.0786 REMARK 3 S31: 0.1230 S32: 0.1253 S33: -0.0467 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OV3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018694. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SRS REMARK 200 BEAMLINE : PX14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 225037 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.05000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 1NG2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1 M NA-CITRATE, 0.1 M NA-CACODYLATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 66.33000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.90500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 66.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.90500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: THE BIOLOGICALLY ACTIVE UNIT OF P47PHOX IS REMARK 300 GENERATED USING AMINO ACIDS 156-200 FROM CHAIN A AND AMINO ACIDS REMARK 300 201-285 FROM CHAIN B. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8270 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -67.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 19020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28880 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -138.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 132.66000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 115.62000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 350 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 148 REMARK 465 PRO A 149 REMARK 465 GLY A 284 REMARK 465 GLN A 285 REMARK 465 GLY B 148 REMARK 465 PRO B 149 REMARK 465 LEU B 150 REMARK 465 GLY B 151 REMARK 465 GLU B 218 REMARK 465 THR B 219 REMARK 465 GLU B 220 REMARK 465 ASP B 221 REMARK 465 PRO B 222 REMARK 465 GLY B 284 REMARK 465 GLN B 285 REMARK 465 LYS C 149 REMARK 465 ALA C 161 REMARK 465 GLU C 162 REMARK 465 ALA C 163 REMARK 465 ARG C 164 REMARK 465 LYS C 165 REMARK 465 LYS C 166 REMARK 465 LYS D 149 REMARK 465 ALA D 161 REMARK 465 GLU D 162 REMARK 465 ALA D 163 REMARK 465 ARG D 164 REMARK 465 LYS D 165 REMARK 465 LYS D 166 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 150 CG CD1 CD2 REMARK 470 SER A 283 O REMARK 470 SER B 283 O REMARK 470 GLN C 150 CG CD OE1 NE2 REMARK 470 PRO C 160 O REMARK 470 GLN D 150 CG CD OE1 NE2 REMARK 470 PRO D 160 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 146 O HOH D 147 1.87 REMARK 500 O TYR B 226 O HOH B 364 1.89 REMARK 500 O HOH B 311 O HOH B 372 1.97 REMARK 500 O PHE A 155 O HOH A 316 2.00 REMARK 500 O HOH B 298 O HOH D 108 2.04 REMARK 500 O HOH A 305 O HOH A 336 2.10 REMARK 500 O HOH D 147 O HOH D 176 2.12 REMARK 500 O HOH B 307 O HOH B 326 2.12 REMARK 500 O HOH B 289 O HOH B 301 2.14 REMARK 500 O HOH D 121 O HOH D 146 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 321 O HOH B 289 2675 2.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 269 CB - CG - OD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 215 47.41 -103.51 REMARK 500 ASP A 269 -119.84 58.64 REMARK 500 SER B 215 158.22 101.26 REMARK 500 ASP B 269 -125.23 53.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NG2 RELATED DB: PDB REMARK 900 STRUCTURE OF AUTOINHIBITED P47PHOX DBREF 1OV3 A 156 285 UNP P14598 NCF1_HUMAN 156 285 DBREF 1OV3 B 156 285 UNP P14598 NCF1_HUMAN 156 285 DBREF 1OV3 C 149 166 GB 4557505 NP_000092 149 166 DBREF 1OV3 D 149 166 GB 4557505 NP_000092 149 166 SEQADV 1OV3 GLY A 148 UNP P14598 EXPRESSION TAG SEQADV 1OV3 PRO A 149 UNP P14598 EXPRESSION TAG SEQADV 1OV3 LEU A 150 UNP P14598 EXPRESSION TAG SEQADV 1OV3 GLY A 151 UNP P14598 EXPRESSION TAG SEQADV 1OV3 SER A 152 UNP P14598 EXPRESSION TAG SEQADV 1OV3 PRO A 153 UNP P14598 EXPRESSION TAG SEQADV 1OV3 GLU A 154 UNP P14598 EXPRESSION TAG SEQADV 1OV3 PHE A 155 UNP P14598 EXPRESSION TAG SEQADV 1OV3 GLY B 148 UNP P14598 EXPRESSION TAG SEQADV 1OV3 PRO B 149 UNP P14598 EXPRESSION TAG SEQADV 1OV3 LEU B 150 UNP P14598 EXPRESSION TAG SEQADV 1OV3 GLY B 151 UNP P14598 EXPRESSION TAG SEQADV 1OV3 SER B 152 UNP P14598 EXPRESSION TAG SEQADV 1OV3 PRO B 153 UNP P14598 EXPRESSION TAG SEQADV 1OV3 GLU B 154 UNP P14598 EXPRESSION TAG SEQADV 1OV3 PHE B 155 UNP P14598 EXPRESSION TAG SEQRES 1 A 138 GLY PRO LEU GLY SER PRO GLU PHE ILE ILE LEU GLN THR SEQRES 2 A 138 TYR ARG ALA ILE ALA ASP TYR GLU LYS THR SER GLY SER SEQRES 3 A 138 GLU MET ALA LEU SER THR GLY ASP VAL VAL GLU VAL VAL SEQRES 4 A 138 GLU LYS SER GLU SER GLY TRP TRP PHE CYS GLN MET LYS SEQRES 5 A 138 ALA LYS ARG GLY TRP ILE PRO ALA SER PHE LEU GLU PRO SEQRES 6 A 138 LEU ASP SER PRO ASP GLU THR GLU ASP PRO GLU PRO ASN SEQRES 7 A 138 TYR ALA GLY GLU PRO TYR VAL ALA ILE LYS ALA TYR THR SEQRES 8 A 138 ALA VAL GLU GLY ASP GLU VAL SER LEU LEU GLU GLY GLU SEQRES 9 A 138 ALA VAL GLU VAL ILE HIS LYS LEU LEU ASP GLY TRP TRP SEQRES 10 A 138 VAL ILE ARG LYS ASP ASP VAL THR GLY TYR PHE PRO SER SEQRES 11 A 138 MET TYR LEU GLN LYS SER GLY GLN SEQRES 1 B 138 GLY PRO LEU GLY SER PRO GLU PHE ILE ILE LEU GLN THR SEQRES 2 B 138 TYR ARG ALA ILE ALA ASP TYR GLU LYS THR SER GLY SER SEQRES 3 B 138 GLU MET ALA LEU SER THR GLY ASP VAL VAL GLU VAL VAL SEQRES 4 B 138 GLU LYS SER GLU SER GLY TRP TRP PHE CYS GLN MET LYS SEQRES 5 B 138 ALA LYS ARG GLY TRP ILE PRO ALA SER PHE LEU GLU PRO SEQRES 6 B 138 LEU ASP SER PRO ASP GLU THR GLU ASP PRO GLU PRO ASN SEQRES 7 B 138 TYR ALA GLY GLU PRO TYR VAL ALA ILE LYS ALA TYR THR SEQRES 8 B 138 ALA VAL GLU GLY ASP GLU VAL SER LEU LEU GLU GLY GLU SEQRES 9 B 138 ALA VAL GLU VAL ILE HIS LYS LEU LEU ASP GLY TRP TRP SEQRES 10 B 138 VAL ILE ARG LYS ASP ASP VAL THR GLY TYR PHE PRO SER SEQRES 11 B 138 MET TYR LEU GLN LYS SER GLY GLN SEQRES 1 C 18 LYS GLN PRO PRO SER ASN PRO PRO PRO ARG PRO PRO ALA SEQRES 2 C 18 GLU ALA ARG LYS LYS SEQRES 1 D 18 LYS GLN PRO PRO SER ASN PRO PRO PRO ARG PRO PRO ALA SEQRES 2 D 18 GLU ALA ARG LYS LYS FORMUL 5 HOH *207(H2 O) SHEET 1 A 5 ARG B 202 PRO B 206 0 SHEET 2 A 5 TRP A 193 MET A 198 -1 N TRP A 194 O ILE B 205 SHEET 3 A 5 VAL A 182 LYS A 188 -1 N GLU A 184 O GLN A 197 SHEET 4 A 5 GLN A 159 ALA A 163 -1 N TYR A 161 O VAL A 183 SHEET 5 A 5 LEU B 210 PRO B 212 -1 O GLU B 211 N ARG A 162 SHEET 1 B 5 ARG A 202 PRO A 206 0 SHEET 2 B 5 TRP B 193 MET B 198 -1 O TRP B 194 N ILE A 205 SHEET 3 B 5 VAL B 182 LYS B 188 -1 N GLU B 184 O GLN B 197 SHEET 4 B 5 GLN B 159 ALA B 163 -1 N GLN B 159 O VAL B 185 SHEET 5 B 5 LEU A 210 PRO A 212 -1 N GLU A 211 O ARG B 162 SHEET 1 C 5 VAL A 271 PRO A 276 0 SHEET 2 C 5 TRP A 263 LYS A 268 -1 N ILE A 266 O GLY A 273 SHEET 3 C 5 ALA A 252 HIS A 257 -1 N GLU A 254 O ARG A 267 SHEET 4 C 5 GLU A 229 ALA A 233 -1 N GLU A 229 O VAL A 255 SHEET 5 C 5 LEU A 280 LYS A 282 -1 O GLN A 281 N VAL A 232 SHEET 1 D 5 VAL B 271 PRO B 276 0 SHEET 2 D 5 TRP B 263 LYS B 268 -1 N ILE B 266 O GLY B 273 SHEET 3 D 5 ALA B 252 HIS B 257 -1 N GLU B 254 O ARG B 267 SHEET 4 D 5 GLU B 229 ALA B 233 -1 N TYR B 231 O VAL B 253 SHEET 5 D 5 LEU B 280 LYS B 282 -1 O GLN B 281 N VAL B 232 CRYST1 132.660 57.810 45.170 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007538 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017299 0.000000 0.00000 SCALE3 0.000000 0.000000 0.022137 0.00000