HEADER VIRAL PROTEIN 04-APR-03 1OYI TITLE SOLUTION STRUCTURE OF THE Z-DNA BINDING DOMAIN OF THE VACCINIA VIRUS TITLE 2 GENE E3L COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLE-STRANDED RNA-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: Z-DNA BINDING DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10245; SOURCE 4 GENE: E3L; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS (ALPHA+BETA) HELIX-TURN-HELIX, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.D.KAHMANN,D.A.WECKING,V.PUTTER,K.LOWENHAUPT,Y.-G.KIM,P.SCHMIEDER, AUTHOR 2 H.OSCHKINAT,A.RICH,M.SCHADE REVDAT 3 23-FEB-22 1OYI 1 REMARK REVDAT 2 24-FEB-09 1OYI 1 VERSN REVDAT 1 09-MAR-04 1OYI 0 JRNL AUTH J.D.KAHMANN,D.A.WECKING,V.PUTTER,K.LOWENHAUPT,Y.-G.KIM, JRNL AUTH 2 P.SCHMIEDER,H.OSCHKINAT,A.RICH,M.SCHADE JRNL TITL THE SOLUTION STRUCTURE OF THE N-TERMINAL DOMAIN OF E3L SHOWS JRNL TITL 2 A TYROSINE CONFORMATION THAT MAY EXPLAIN ITS REDUCED JRNL TITL 3 AFFINITY TO Z-DNA IN VITRO. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 2712 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 14981270 JRNL DOI 10.1073/PNAS.0308612100 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, DYANA 1.5 REMARK 3 AUTHORS : NEIDIG, R. (XWINNMR), GUNTERT, P. (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1OYI COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018802. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.2 MM U-15N E3L; 2 MM U-13C,15N REMARK 210 E3L REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.1, DYANA 1.5 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 450 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : 20 STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: RESONANCE ASSIGNMENTS WERE OBTAINED FROM TRIPLE-RESONANCE REMARK 210 NMR SPECTRA AND 3D 15N-SEPARATED NOESY SPECTRA REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 GLY A 1 REMARK 465 SER A 2 REMARK 465 HIS A 3 REMARK 465 MET A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 LYS A 7 REMARK 465 ILE A 8 REMARK 465 TYR A 9 REMARK 465 ILE A 10 REMARK 465 ASP A 11 REMARK 465 GLU A 12 REMARK 465 GLU A 75 REMARK 465 ALA A 76 REMARK 465 ASP A 77 REMARK 465 GLU A 78 REMARK 465 ALA A 79 REMARK 465 ASP A 80 REMARK 465 ALA A 81 REMARK 465 ASP A 82 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG1 THR A 32 O PRO A 68 1.51 REMARK 500 O ASN A 15 H VAL A 19 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 14 -78.40 -175.22 REMARK 500 1 ILE A 26 -100.63 -87.21 REMARK 500 1 ALA A 33 -73.55 -64.57 REMARK 500 1 GLN A 35 -81.85 -39.94 REMARK 500 1 LEU A 40 -75.29 -108.47 REMARK 500 1 ASN A 41 -47.64 176.23 REMARK 500 1 MET A 42 41.13 163.11 REMARK 500 1 GLU A 43 55.52 -90.01 REMARK 500 1 ALA A 58 16.54 86.10 REMARK 500 1 TYR A 61 -166.36 -124.75 REMARK 500 1 ASP A 64 29.71 80.36 REMARK 500 1 PHE A 71 -169.68 -113.54 REMARK 500 1 THR A 73 157.49 55.89 REMARK 500 2 SER A 14 -68.04 -176.61 REMARK 500 2 GLU A 21 -29.26 -39.05 REMARK 500 2 ILE A 26 -100.31 -55.76 REMARK 500 2 THR A 32 -157.19 -80.08 REMARK 500 2 ALA A 33 -71.18 -79.18 REMARK 500 2 GLN A 35 -78.95 -38.44 REMARK 500 2 ASN A 41 -57.20 167.39 REMARK 500 2 MET A 42 36.81 175.94 REMARK 500 2 ALA A 58 21.50 84.54 REMARK 500 2 TYR A 61 -167.12 -125.70 REMARK 500 2 ASP A 64 38.83 79.52 REMARK 500 2 PHE A 71 -169.44 -114.05 REMARK 500 2 THR A 73 72.14 40.51 REMARK 500 3 SER A 14 -65.19 172.84 REMARK 500 3 ILE A 26 -100.37 -73.04 REMARK 500 3 GLN A 35 -82.02 -37.17 REMARK 500 3 LEU A 40 -78.21 -109.76 REMARK 500 3 ASN A 41 -47.95 178.90 REMARK 500 3 MET A 42 41.66 162.71 REMARK 500 3 ALA A 58 21.24 84.98 REMARK 500 3 TYR A 61 -169.24 -126.46 REMARK 500 3 ASP A 64 20.84 82.44 REMARK 500 3 THR A 73 85.55 32.35 REMARK 500 4 SER A 14 -61.07 175.92 REMARK 500 4 ILE A 26 -101.01 -72.03 REMARK 500 4 ALA A 33 -76.20 64.12 REMARK 500 4 GLN A 35 -71.58 -37.58 REMARK 500 4 LEU A 40 -78.65 -109.83 REMARK 500 4 ASN A 41 -42.02 179.77 REMARK 500 4 MET A 42 41.04 162.97 REMARK 500 4 GLU A 43 54.97 -95.84 REMARK 500 4 LYS A 44 -19.35 -49.21 REMARK 500 5 SER A 14 -67.62 178.69 REMARK 500 5 ILE A 26 -99.97 -72.72 REMARK 500 5 LEU A 40 -80.70 -107.73 REMARK 500 5 ASN A 41 -50.86 179.62 REMARK 500 5 MET A 42 39.75 166.71 REMARK 500 REMARK 500 THIS ENTRY HAS 209 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 999 REMARK 999 SEQUENCE REMARK 999 THESE RESIDUES ARE VECTOR-ENCODED. DBREF 1OYI A 5 81 UNP Q86638 Q86638_9POXV 2 78 SEQADV 1OYI GLY A 1 UNP Q86638 SEE REMARK 999 SEQADV 1OYI SER A 2 UNP Q86638 SEE REMARK 999 SEQADV 1OYI HIS A 3 UNP Q86638 SEE REMARK 999 SEQADV 1OYI MET A 4 UNP Q86638 SEE REMARK 999 SEQADV 1OYI ALA A 5 UNP Q86638 SEE REMARK 999 SEQRES 1 A 82 GLY SER HIS MET ALA SER LYS ILE TYR ILE ASP GLU ARG SEQRES 2 A 82 SER ASN ALA GLU ILE VAL CYS GLU ALA ILE LYS THR ILE SEQRES 3 A 82 GLY ILE GLU GLY ALA THR ALA ALA GLN LEU THR ARG GLN SEQRES 4 A 82 LEU ASN MET GLU LYS ARG GLU VAL ASN LYS ALA LEU TYR SEQRES 5 A 82 ASP LEU GLN ARG SER ALA MET VAL TYR SER SER ASP ASP SEQRES 6 A 82 ILE PRO PRO ARG TRP PHE MET THR THR GLU ALA ASP GLU SEQRES 7 A 82 ALA ASP ALA ASP HELIX 1 1 ASN A 15 GLY A 27 1 13 HELIX 2 2 ALA A 33 LEU A 40 1 8 HELIX 3 3 GLU A 43 ALA A 58 1 16 SHEET 1 A 3 ALA A 31 THR A 32 0 SHEET 2 A 3 ARG A 69 PHE A 71 -1 O TRP A 70 N ALA A 31 SHEET 3 A 3 TYR A 61 SER A 62 -1 N TYR A 61 O PHE A 71 CISPEP 1 ILE A 66 PRO A 67 1 -0.07 CISPEP 2 ILE A 66 PRO A 67 2 -0.06 CISPEP 3 ILE A 66 PRO A 67 3 0.03 CISPEP 4 ILE A 66 PRO A 67 4 0.04 CISPEP 5 ILE A 66 PRO A 67 5 0.02 CISPEP 6 ILE A 66 PRO A 67 6 0.02 CISPEP 7 ILE A 66 PRO A 67 7 0.03 CISPEP 8 ILE A 66 PRO A 67 8 0.05 CISPEP 9 ILE A 66 PRO A 67 9 -0.04 CISPEP 10 ILE A 66 PRO A 67 10 0.00 CISPEP 11 ILE A 66 PRO A 67 11 -0.05 CISPEP 12 ILE A 66 PRO A 67 12 -0.02 CISPEP 13 ILE A 66 PRO A 67 13 -0.04 CISPEP 14 ILE A 66 PRO A 67 14 0.00 CISPEP 15 ILE A 66 PRO A 67 15 -0.01 CISPEP 16 ILE A 66 PRO A 67 16 0.00 CISPEP 17 ILE A 66 PRO A 67 17 0.00 CISPEP 18 ILE A 66 PRO A 67 18 -0.03 CISPEP 19 ILE A 66 PRO A 67 19 0.00 CISPEP 20 ILE A 66 PRO A 67 20 -0.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1