HEADER OXIDOREDUCTASE 10-APR-03 1P0C TITLE CRYSTAL STRUCTURE OF THE NADP(H)-DEPENDENT VERTEBRATE ALCOHOL TITLE 2 DEHYDROGENASE (ADH8) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NADP-DEPENDENT ALCOHOL DEHYDROGENASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 1.1.1.2; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RANA PEREZI; SOURCE 3 ORGANISM_COMMON: PEREZ'S FROG; SOURCE 4 ORGANISM_TAXID: 8403; SOURCE 5 GENE: ADH; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGEX4T-2 KEYWDS ADH TOPOLOGY, NADP(H)-DEPENDENT, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.ROSELL,E.VALENCIA,X.PARES,I.FITA,J.FARRES,W.F.OCHOA REVDAT 5 14-FEB-24 1P0C 1 REMARK SEQADV LINK REVDAT 4 13-JUL-11 1P0C 1 VERSN REVDAT 3 24-FEB-09 1P0C 1 VERSN REVDAT 2 19-AUG-03 1P0C 1 JRNL REVDAT 1 22-APR-03 1P0C 0 JRNL AUTH A.ROSELL,E.VALENCIA,X.PARES,I.FITA,J.FARRES,W.F.OCHOA JRNL TITL CRYSTAL STRUCTURE OF THE VERTEBRATE NADP(H)-DEPENDENT JRNL TITL 2 ALCOHOL DEHYDROGENASE (ADH8) JRNL REF J.MOL.BIOL. V. 330 75 2003 JRNL REFN ISSN 0022-2836 JRNL PMID 12818203 JRNL DOI 10.1016/S0022-2836(03)00431-5 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.VALENCIA,A.ROSELL,C.LARROY,J.FARRES,J.A.BIOSCA,I.FITA, REMARK 1 AUTH 2 X.PARES,W.F.OCHOA REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF REMARK 1 TITL 2 NADP(H)-DEPENDENT ALCOHOL DEHYDROGENASES FROM SACCHAROMYCES REMARK 1 TITL 3 CEREVISIAE AND RANA PEREZI REMARK 1 REF ACTA CRYSTALLOGR.,SECT.D V. 59 334 2003 REMARK 1 REFN ISSN 0907-4449 REMARK 1 DOI 10.1107/S090744490201661X REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 52.6 REMARK 3 NUMBER OF REFLECTIONS : 40879 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 169 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5456 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 26 REMARK 3 SOLVENT ATOMS : 307 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.49700 REMARK 3 B22 (A**2) : -5.98100 REMARK 3 B33 (A**2) : 6.47800 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -3.91400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.301 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.050 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.352 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.320 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : CRY.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P0C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018859. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-MAR-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.953 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 79197 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.21 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 4000, LISO4, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 61.27550 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.76150 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 61.27550 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.76150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4230 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 28000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -109.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1000 REMARK 465 MET B 2000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 SER B 2361 REMARK 475 SER B 2362 REMARK 475 GLY B 2363 REMARK 475 GLY B 2365 REMARK 475 VAL B 2366 REMARK 475 ARG B 2367 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLN B 2364 N CA C O CB CG CD REMARK 480 GLN B 2364 OE1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A1067 27.11 -149.25 REMARK 500 THR A1143 -91.02 -116.15 REMARK 500 SER A1144 107.30 79.45 REMARK 500 PHE A1146 49.78 -84.42 REMARK 500 CYS A1173 -77.82 -158.94 REMARK 500 LEU A1199 61.57 -102.89 REMARK 500 SER A1285 17.57 -167.71 REMARK 500 PRO A1296 -41.83 -27.00 REMARK 500 VAL A1366 -84.03 -98.41 REMARK 500 HIS B2018 12.07 53.57 REMARK 500 HIS B2067 29.23 -155.60 REMARK 500 THR B2143 -85.65 -119.28 REMARK 500 SER B2144 108.64 72.33 REMARK 500 CYS B2173 -78.88 -166.28 REMARK 500 LEU B2199 62.20 -102.89 REMARK 500 SER B2285 -0.03 -168.81 REMARK 500 PRO B2296 -70.66 -20.97 REMARK 500 PRO B2301 82.85 -67.18 REMARK 500 VAL B2366 -57.04 -125.31 REMARK 500 ARG B2367 115.35 -169.43 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1046 SG REMARK 620 2 HIS A1067 NE2 116.0 REMARK 620 3 CYS A1173 SG 126.7 105.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A1097 SG REMARK 620 2 CYS A1100 SG 111.5 REMARK 620 3 CYS A1103 SG 117.9 106.4 REMARK 620 4 CYS A1111 SG 102.5 116.9 101.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2502 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 231 O REMARK 620 2 CYS B2046 SG 136.5 REMARK 620 3 HIS B2067 NE2 91.5 114.8 REMARK 620 4 CYS B2173 SG 101.0 111.9 91.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B2501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B2097 SG REMARK 620 2 CYS B2100 SG 110.0 REMARK 620 3 CYS B2103 SG 115.5 102.8 REMARK 620 4 CYS B2111 SG 104.6 117.4 107.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 1502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 2502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 1603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 2603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 8001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 8002 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P0F RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE BINARY COMPLEX: NADP(H)-DEPENDENT REMARK 900 VERTEBRATE ALCOHOL DEHYDROGENASE (ADH8) WITH THE COFACTOR NADP DBREF 1P0C A 1000 1372 UNP O57380 ADH8_RANPE 0 372 DBREF 1P0C B 2000 2372 UNP O57380 ADH8_RANPE 0 372 SEQADV 1P0C MET A 1141 UNP O57380 VAL 141 CONFLICT SEQADV 1P0C MET B 2141 UNP O57380 VAL 141 CONFLICT SEQRES 1 A 373 MET CYS THR ALA GLY LYS ASP ILE THR CYS LYS ALA ALA SEQRES 2 A 373 VAL ALA TRP GLU PRO HIS LYS PRO LEU SER LEU GLU THR SEQRES 3 A 373 ILE THR VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE SEQRES 4 A 373 LYS ILE LEU ALA SER GLY ILE CYS GLY SER ASP SER SER SEQRES 5 A 373 VAL LEU LYS GLU ILE ILE PRO SER LYS PHE PRO VAL ILE SEQRES 6 A 373 LEU GLY HIS GLU ALA VAL GLY VAL VAL GLU SER ILE GLY SEQRES 7 A 373 ALA GLY VAL THR CYS VAL LYS PRO GLY ASP LYS VAL ILE SEQRES 8 A 373 PRO LEU PHE VAL PRO GLN CYS GLY SER CYS ARG ALA CYS SEQRES 9 A 373 LYS SER SER ASN SER ASN PHE CYS GLU LYS ASN ASP MET SEQRES 10 A 373 GLY ALA LYS THR GLY LEU MET ALA ASP MET THR SER ARG SEQRES 11 A 373 PHE THR CYS ARG GLY LYS PRO ILE TYR ASN LEU MET GLY SEQRES 12 A 373 THR SER THR PHE THR GLU TYR THR VAL VAL ALA ASP ILE SEQRES 13 A 373 ALA VAL ALA LYS ILE ASP PRO LYS ALA PRO LEU GLU SER SEQRES 14 A 373 CYS LEU ILE GLY CYS GLY PHE ALA THR GLY TYR GLY ALA SEQRES 15 A 373 ALA VAL ASN THR ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 A 373 ALA VAL PHE GLY LEU GLY GLY VAL GLY PHE SER ALA ILE SEQRES 17 A 373 VAL GLY CYS LYS ALA ALA GLY ALA SER ARG ILE ILE GLY SEQRES 18 A 373 VAL GLY THR HIS LYS ASP LYS PHE PRO LYS ALA ILE GLU SEQRES 19 A 373 LEU GLY ALA THR GLU CYS LEU ASN PRO LYS ASP TYR ASP SEQRES 20 A 373 LYS PRO ILE TYR GLU VAL ILE CYS GLU LYS THR ASN GLY SEQRES 21 A 373 GLY VAL ASP TYR ALA VAL GLU CYS ALA GLY ARG ILE GLU SEQRES 22 A 373 THR MET MET ASN ALA LEU GLN SER THR TYR CYS GLY SER SEQRES 23 A 373 GLY VAL THR VAL VAL LEU GLY LEU ALA SER PRO ASN GLU SEQRES 24 A 373 ARG LEU PRO LEU ASP PRO LEU LEU LEU LEU THR GLY ARG SEQRES 25 A 373 SER LEU LYS GLY SER VAL PHE GLY GLY PHE LYS GLY GLU SEQRES 26 A 373 GLU VAL SER ARG LEU VAL ASP ASP TYR MET LYS LYS LYS SEQRES 27 A 373 ILE ASN VAL ASN PHE LEU VAL SER THR LYS LEU THR LEU SEQRES 28 A 373 ASP GLN ILE ASN LYS ALA PHE GLU LEU LEU SER SER GLY SEQRES 29 A 373 GLN GLY VAL ARG SER ILE MET ILE TYR SEQRES 1 B 373 MET CYS THR ALA GLY LYS ASP ILE THR CYS LYS ALA ALA SEQRES 2 B 373 VAL ALA TRP GLU PRO HIS LYS PRO LEU SER LEU GLU THR SEQRES 3 B 373 ILE THR VAL ALA PRO PRO LYS ALA HIS GLU VAL ARG ILE SEQRES 4 B 373 LYS ILE LEU ALA SER GLY ILE CYS GLY SER ASP SER SER SEQRES 5 B 373 VAL LEU LYS GLU ILE ILE PRO SER LYS PHE PRO VAL ILE SEQRES 6 B 373 LEU GLY HIS GLU ALA VAL GLY VAL VAL GLU SER ILE GLY SEQRES 7 B 373 ALA GLY VAL THR CYS VAL LYS PRO GLY ASP LYS VAL ILE SEQRES 8 B 373 PRO LEU PHE VAL PRO GLN CYS GLY SER CYS ARG ALA CYS SEQRES 9 B 373 LYS SER SER ASN SER ASN PHE CYS GLU LYS ASN ASP MET SEQRES 10 B 373 GLY ALA LYS THR GLY LEU MET ALA ASP MET THR SER ARG SEQRES 11 B 373 PHE THR CYS ARG GLY LYS PRO ILE TYR ASN LEU MET GLY SEQRES 12 B 373 THR SER THR PHE THR GLU TYR THR VAL VAL ALA ASP ILE SEQRES 13 B 373 ALA VAL ALA LYS ILE ASP PRO LYS ALA PRO LEU GLU SER SEQRES 14 B 373 CYS LEU ILE GLY CYS GLY PHE ALA THR GLY TYR GLY ALA SEQRES 15 B 373 ALA VAL ASN THR ALA LYS VAL THR PRO GLY SER THR CYS SEQRES 16 B 373 ALA VAL PHE GLY LEU GLY GLY VAL GLY PHE SER ALA ILE SEQRES 17 B 373 VAL GLY CYS LYS ALA ALA GLY ALA SER ARG ILE ILE GLY SEQRES 18 B 373 VAL GLY THR HIS LYS ASP LYS PHE PRO LYS ALA ILE GLU SEQRES 19 B 373 LEU GLY ALA THR GLU CYS LEU ASN PRO LYS ASP TYR ASP SEQRES 20 B 373 LYS PRO ILE TYR GLU VAL ILE CYS GLU LYS THR ASN GLY SEQRES 21 B 373 GLY VAL ASP TYR ALA VAL GLU CYS ALA GLY ARG ILE GLU SEQRES 22 B 373 THR MET MET ASN ALA LEU GLN SER THR TYR CYS GLY SER SEQRES 23 B 373 GLY VAL THR VAL VAL LEU GLY LEU ALA SER PRO ASN GLU SEQRES 24 B 373 ARG LEU PRO LEU ASP PRO LEU LEU LEU LEU THR GLY ARG SEQRES 25 B 373 SER LEU LYS GLY SER VAL PHE GLY GLY PHE LYS GLY GLU SEQRES 26 B 373 GLU VAL SER ARG LEU VAL ASP ASP TYR MET LYS LYS LYS SEQRES 27 B 373 ILE ASN VAL ASN PHE LEU VAL SER THR LYS LEU THR LEU SEQRES 28 B 373 ASP GLN ILE ASN LYS ALA PHE GLU LEU LEU SER SER GLY SEQRES 29 B 373 GLN GLY VAL ARG SER ILE MET ILE TYR HET ZN A1501 1 HET ZN A1502 1 HET PO4 A1603 5 HET GOL A8001 6 HET ZN B2501 1 HET ZN B2502 1 HET PO4 B2603 5 HET GOL B8002 6 HETNAM ZN ZINC ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 ZN 4(ZN 2+) FORMUL 5 PO4 2(O4 P 3-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 11 HOH *307(H2 O) HELIX 1 1 CYS A 1046 LYS A 1054 1 9 HELIX 2 2 CYS A 1100 SER A 1105 1 6 HELIX 3 3 PRO A 1165 GLY A 1172 5 8 HELIX 4 4 CYS A 1173 ASN A 1184 1 12 HELIX 5 5 GLY A 1200 ALA A 1213 1 14 HELIX 6 6 HIS A 1224 ASP A 1226 5 3 HELIX 7 7 LYS A 1227 GLY A 1235 1 9 HELIX 8 8 ASN A 1241 TYR A 1245 5 5 HELIX 9 9 PRO A 1248 THR A 1257 1 10 HELIX 10 10 ARG A 1270 SER A 1280 1 11 HELIX 11 11 PRO A 1304 THR A 1309 1 6 HELIX 12 12 VAL A 1317 PHE A 1321 5 5 HELIX 13 13 LYS A 1322 GLU A 1324 5 3 HELIX 14 14 GLU A 1325 LYS A 1335 1 11 HELIX 15 15 ASN A 1339 PHE A 1342 5 4 HELIX 16 16 THR A 1349 ASP A 1351 5 3 HELIX 17 17 GLN A 1352 SER A 1362 1 11 HELIX 18 18 CYS B 2046 LYS B 2054 1 9 HELIX 19 19 CYS B 2100 SER B 2105 1 6 HELIX 20 20 PRO B 2165 GLY B 2172 5 8 HELIX 21 21 CYS B 2173 ASN B 2184 1 12 HELIX 22 22 GLY B 2200 ALA B 2213 1 14 HELIX 23 23 HIS B 2224 ASP B 2226 5 3 HELIX 24 24 LYS B 2227 LEU B 2234 1 8 HELIX 25 25 ASN B 2241 TYR B 2245 5 5 HELIX 26 26 PRO B 2248 THR B 2257 1 10 HELIX 27 27 ARG B 2270 SER B 2280 1 11 HELIX 28 28 PRO B 2304 THR B 2309 1 6 HELIX 29 29 VAL B 2317 PHE B 2321 5 5 HELIX 30 30 LYS B 2322 GLU B 2324 5 3 HELIX 31 31 GLU B 2325 LYS B 2335 1 11 HELIX 32 32 ASN B 2339 VAL B 2344 5 6 HELIX 33 33 THR B 2349 ASP B 2351 5 3 HELIX 34 34 GLN B 2352 GLY B 2363 1 12 SHEET 1 A 5 VAL A1063 ILE A1064 0 SHEET 2 A 5 ILE A1007 ALA A1014 -1 N ALA A1014 O VAL A1063 SHEET 3 A 5 SER A1022 VAL A1028 -1 O SER A1022 N VAL A1013 SHEET 4 A 5 PHE A1130 CYS A1132 -1 O THR A1131 N THR A1027 SHEET 5 A 5 LYS A1135 ILE A1137 -1 O LYS A1135 N CYS A1132 SHEET 1 B 5 VAL A1157 ILE A1160 0 SHEET 2 B 5 LYS A1088 PRO A1091 -1 N LYS A1088 O ILE A1160 SHEET 3 B 5 ALA A1069 ILE A1076 -1 N GLY A1071 O VAL A1089 SHEET 4 B 5 GLU A1035 GLY A1044 -1 N LYS A1039 O VAL A1072 SHEET 5 B 5 TYR A1149 ALA A1153 -1 O THR A1150 N ILE A1038 SHEET 1 C 6 VAL A1157 ILE A1160 0 SHEET 2 C 6 LYS A1088 PRO A1091 -1 N LYS A1088 O ILE A1160 SHEET 3 C 6 ALA A1069 ILE A1076 -1 N GLY A1071 O VAL A1089 SHEET 4 C 6 GLU A1035 GLY A1044 -1 N LYS A1039 O VAL A1072 SHEET 5 C 6 ARG A1367 ILE A1371 -1 O MET A1370 N SER A1043 SHEET 6 C 6 VAL A1344 LEU A1348 1 N LEU A1348 O ILE A1369 SHEET 1 D12 GLU A1238 LEU A1240 0 SHEET 2 D12 ARG A1217 VAL A1221 1 N GLY A1220 O GLU A1238 SHEET 3 D12 THR A1193 PHE A1197 1 N CYS A1194 O ILE A1219 SHEET 4 D12 TYR A1263 GLU A1266 1 O VAL A1265 N PHE A1197 SHEET 5 D12 VAL A1287 VAL A1290 1 O VAL A1289 N ALA A1264 SHEET 6 D12 SER A1312 GLY A1315 1 O LYS A1314 N THR A1288 SHEET 7 D12 SER B2312 GLY B2315 -1 O LEU B2313 N LEU A1313 SHEET 8 D12 VAL B2287 VAL B2290 1 N THR B2288 O LYS B2314 SHEET 9 D12 TYR B2263 GLU B2266 1 N GLU B2266 O VAL B2289 SHEET 10 D12 THR B2193 PHE B2197 1 N PHE B2197 O VAL B2265 SHEET 11 D12 ARG B2217 VAL B2221 1 O ARG B2217 N CYS B2194 SHEET 12 D12 GLU B2238 LEU B2240 1 O GLU B2238 N GLY B2220 SHEET 1 E 2 LEU A1300 LEU A1302 0 SHEET 2 E 2 LEU B2300 LEU B2302 -1 O LEU B2302 N LEU A1300 SHEET 1 F 5 VAL B2063 ILE B2064 0 SHEET 2 F 5 ILE B2007 ALA B2014 -1 N ALA B2014 O VAL B2063 SHEET 3 F 5 SER B2022 VAL B2028 -1 O VAL B2028 N ILE B2007 SHEET 4 F 5 PHE B2130 CYS B2132 -1 O THR B2131 N THR B2027 SHEET 5 F 5 LYS B2135 ILE B2137 -1 O LYS B2135 N CYS B2132 SHEET 1 G 5 VAL B2157 LYS B2159 0 SHEET 2 G 5 LYS B2088 PRO B2091 -1 N ILE B2090 O ALA B2158 SHEET 3 G 5 ALA B2069 ILE B2076 -1 N GLY B2071 O VAL B2089 SHEET 4 G 5 GLU B2035 GLY B2044 -1 N LYS B2039 O VAL B2072 SHEET 5 G 5 TYR B2149 ALA B2153 -1 O THR B2150 N ILE B2038 SHEET 1 H 6 VAL B2157 LYS B2159 0 SHEET 2 H 6 LYS B2088 PRO B2091 -1 N ILE B2090 O ALA B2158 SHEET 3 H 6 ALA B2069 ILE B2076 -1 N GLY B2071 O VAL B2089 SHEET 4 H 6 GLU B2035 GLY B2044 -1 N LYS B2039 O VAL B2072 SHEET 5 H 6 SER B2368 ILE B2371 -1 O MET B2370 N SER B2043 SHEET 6 H 6 THR B2346 LEU B2348 1 N LEU B2348 O ILE B2371 LINK SG CYS A1046 ZN ZN A1502 1555 1555 2.58 LINK NE2 HIS A1067 ZN ZN A1502 1555 1555 2.41 LINK SG CYS A1097 ZN ZN A1501 1555 1555 2.45 LINK SG CYS A1100 ZN ZN A1501 1555 1555 2.35 LINK SG CYS A1103 ZN ZN A1501 1555 1555 2.40 LINK SG CYS A1111 ZN ZN A1501 1555 1555 2.53 LINK SG CYS A1173 ZN ZN A1502 1555 1555 2.34 LINK O HOH B 231 ZN ZN B2502 1555 1555 2.61 LINK SG CYS B2046 ZN ZN B2502 1555 1555 2.60 LINK NE2 HIS B2067 ZN ZN B2502 1555 1555 2.41 LINK SG CYS B2097 ZN ZN B2501 1555 1555 2.48 LINK SG CYS B2100 ZN ZN B2501 1555 1555 2.30 LINK SG CYS B2103 ZN ZN B2501 1555 1555 2.37 LINK SG CYS B2111 ZN ZN B2501 1555 1555 2.44 LINK SG CYS B2173 ZN ZN B2502 1555 1555 2.48 CISPEP 1 PHE A 1061 PRO A 1062 0 0.07 CISPEP 2 PHE B 2061 PRO B 2062 0 -0.14 SITE 1 AC1 4 CYS A1097 CYS A1100 CYS A1103 CYS A1111 SITE 1 AC2 5 HOH A 232 CYS A1046 SER A1048 HIS A1067 SITE 2 AC2 5 CYS A1173 SITE 1 AC3 4 CYS B2097 CYS B2100 CYS B2103 CYS B2111 SITE 1 AC4 5 HOH B 231 CYS B2046 SER B2048 HIS B2067 SITE 2 AC4 5 CYS B2173 SITE 1 AC5 7 HOH A 135 CYS A1046 GLY A1047 GLY A1200 SITE 2 AC5 7 GLY A1201 VAL A1202 ARG A1367 SITE 1 AC6 5 HOH B 213 CYS B2046 GLY B2047 GLY B2201 SITE 2 AC6 5 VAL B2202 SITE 1 AC7 7 GLY A1198 LEU A1199 VAL A1221 GLY A1222 SITE 2 AC7 7 THR A1223 HIS A1224 ARG A1270 SITE 1 AC8 5 LEU B2199 GLY B2222 THR B2223 HIS B2224 SITE 2 AC8 5 LYS B2227 CRYST1 122.551 79.523 91.892 90.00 113.10 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008160 0.000000 0.003480 0.00000 SCALE2 0.000000 0.012575 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011831 0.00000