HEADER IMMUNE SYSTEM/HYDROLASE 15-APR-03 1P2C TITLE CRYSTAL STRUCTURE ANALYSIS OF AN ANTI-LYSOZYME ANTIBODY COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIGHT CHAIN ANTI-LYSOZYME ANTIBODY F10.6.6; COMPND 3 CHAIN: A, D; COMPND 4 MOL_ID: 2; COMPND 5 MOLECULE: HEAVY CHAIN VH+CH1 ANTI-LYSOZYME ANTIBODY F10.6.6; COMPND 6 CHAIN: B, E; COMPND 7 MOL_ID: 3; COMPND 8 MOLECULE: LYSOZYME C; COMPND 9 CHAIN: C, F; COMPND 10 SYNONYM: 1,4-BETA-N-ACETYLMURAMIDASE C, ALLERGEN GAL D 4, GAL D IV; COMPND 11 EC: 3.2.1.17 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: BALB-C; SOURCE 6 MOL_ID: 2; SOURCE 7 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 8 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 9 ORGANISM_TAXID: 10090; SOURCE 10 STRAIN: BALB-C; SOURCE 11 MOL_ID: 3; SOURCE 12 ORGANISM_SCIENTIFIC: GALLUS GALLUS; SOURCE 13 ORGANISM_COMMON: CHICKEN; SOURCE 14 ORGANISM_TAXID: 9031 KEYWDS MONOCLONAL ANTIBODY IGG1, KAPPA ANTIBODY-ANTIGEN COMPLEX, IMMUNE KEYWDS 2 SYSTEM-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.CAUERHFF,F.A.GOLDBAUM,B.C.BRADEN REVDAT 5 09-OCT-24 1P2C 1 REMARK REVDAT 4 03-APR-24 1P2C 1 REMARK REVDAT 3 24-FEB-09 1P2C 1 VERSN REVDAT 2 04-MAY-04 1P2C 1 JRNL REVDAT 1 17-FEB-04 1P2C 0 JRNL AUTH A.CAUERHFF,F.A.GOLDBAUM,B.C.BRADEN JRNL TITL STRUCTURAL MECHANISM FOR AFFINITY MATURATION OF AN JRNL TITL 2 ANTI-LYSOZYME ANTIBODY. JRNL REF PROC.NATL.ACAD.SCI.USA V. 101 3539 2004 JRNL REFN ISSN 0027-8424 JRNL PMID 14988501 JRNL DOI 10.1073/PNAS.0400060101 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH F.A.GOLDBAUM,A.CAUERHFF,C.A.VELIKOVSKY,A.S.LLERA, REMARK 1 AUTH 2 M.M.RIOTTOT,R.J.POLJAK REMARK 1 TITL LACK OF SIGNIFICANT DIFFERENCES IN ASSOCIATION RATES AND REMARK 1 TITL 2 AFFINITIES OF ANTIBODIES FROM SHORT-TERM AND LONG-TERM REMARK 1 TITL 3 RESPONSES TO HEN EGG LYSOZYME REMARK 1 REF J.IMMUNOL. V. 162 6040 1999 REMARK 1 REFN ISSN 0022-1767 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 60226 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 6099 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 8463 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 887 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.31 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P2C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000018924. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-FEB-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : OSMIC MIRRORS REMARK 200 OPTICS : CONFOCAL MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 DATA SCALING SOFTWARE : CRYSTALCLEAR (MSC/RIGAKU) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60488 REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : 2.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.01300 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.03600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: D44.1 FAB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1000, CACL2, PH 4.6, VAPOR REMARK 280 DIFFUSION, TEMPERATURE 298.K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS AN FAB FRAGMENT (LIGHT CHAIN+VH REMARK 300 AND CH1 DOMAINS) BOUND TO A HEN EGG-WHITE LYSOZYME REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 431 REMARK 465 ALA B 432 REMARK 465 ALA B 433 REMARK 465 GLN B 434 REMARK 465 THR B 435 REMARK 465 ASN B 436 REMARK 465 ASP B 517 REMARK 465 CYS B 518 REMARK 465 ASN D 1112 REMARK 465 SER E 1331 REMARK 465 ALA E 1332 REMARK 465 ALA E 1333 REMARK 465 GLN E 1334 REMARK 465 THR E 1335 REMARK 465 ASN E 1336 REMARK 465 CYS E 1418 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 2207 O HOH B 2785 1.59 REMARK 500 O HOH C 2210 O HOH C 2520 1.67 REMARK 500 O HOH B 2017 O HOH B 2369 1.71 REMARK 500 O HOH C 2540 O HOH C 2898 1.76 REMARK 500 O HOH C 2518 O HOH C 2790 1.81 REMARK 500 O HOH A 2011 O HOH A 2712 1.84 REMARK 500 O HOH B 2387 O HOH B 2500 1.86 REMARK 500 O HOH E 2262 O HOH E 2815 1.91 REMARK 500 O HOH A 2335 O HOH A 2743 1.95 REMARK 500 O HOH A 2022 O HOH A 2332 1.95 REMARK 500 O HOH A 2480 O HOH B 2126 1.95 REMARK 500 O HOH A 2128 O HOH A 2544 1.99 REMARK 500 O HOH A 2155 O HOH A 2491 2.06 REMARK 500 O HOH C 2209 O HOH C 2532 2.07 REMARK 500 O HOH B 2377 O HOH C 2548 2.08 REMARK 500 O HOH A 2471 O HOH A 2856 2.08 REMARK 500 O HOH E 2265 O HOH E 2594 2.08 REMARK 500 O HOH D 2244 O HOH F 2614 2.09 REMARK 500 O HOH A 2721 O HOH A 2763 2.11 REMARK 500 O ASP A 165 O HOH A 2153 2.12 REMARK 500 OG SER F 1581 O HOH F 2848 2.15 REMARK 500 O HOH B 2515 O HOH B 2777 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH D 2551 O HOH E 2270 1455 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU B 306 CD GLU B 306 OE2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 30 -127.66 52.33 REMARK 500 THR A 51 -47.93 71.30 REMARK 500 SER A 67 143.95 -177.10 REMARK 500 ALA A 130 114.34 -160.61 REMARK 500 LYS A 169 -73.16 -83.40 REMARK 500 THR B 328 99.98 -69.99 REMARK 500 PRO B 353 118.29 -36.75 REMARK 500 GLU B 362 -33.64 -19.20 REMARK 500 VAL B 364 75.73 -150.86 REMARK 500 LYS B 365 -50.71 -123.74 REMARK 500 ALA B 392 -179.32 -179.16 REMARK 500 ASN C 619 34.02 70.28 REMARK 500 ASN C 646 -156.92 -98.60 REMARK 500 SER D 930 -121.70 54.06 REMARK 500 THR D 951 -51.29 73.09 REMARK 500 SER D 967 152.59 172.62 REMARK 500 ALA D1030 118.04 -164.51 REMARK 500 SER D1101 145.86 -174.31 REMARK 500 GLU E1262 -36.83 -38.23 REMARK 500 ALA E1292 -178.82 179.10 REMARK 500 SER E1363 -51.17 -123.98 REMARK 500 ARG E1416 101.40 63.61 REMARK 500 ARG F1628 9.12 42.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MLB RELATED DB: PDB REMARK 900 ANTI-LYSOZYME ANTIBODY D44.1 REMARK 900 RELATED ID: 1MLC RELATED DB: PDB REMARK 900 ANTI-LYSOYME ANTIBODY D44.1 COMPLEX WITH LYSOZYME REMARK 999 REMARK 999 SEQUENCE REMARK 999 THERE IS NO APPROPRIATE SEQUENCE DATABASE REMARK 999 MATCH FOR THE ANTIBODY CHAINS. DBREF 1P2C C 601 729 UNP P00698 LYSC_CHICK 19 147 DBREF 1P2C F 1501 1629 UNP P00698 LYSC_CHICK 19 147 DBREF 1P2C A 1 212 PDB 1P2C 1P2C 1 212 DBREF 1P2C B 301 518 PDB 1P2C 1P2C 301 518 DBREF 1P2C D 901 1112 PDB 1P2C 1P2C 901 1112 DBREF 1P2C E 1201 1418 PDB 1P2C 1P2C 1201 1418 SEQRES 1 A 212 ASP ILE GLU LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 A 212 THR PRO GLY ASP SER VAL SER LEU SER CYS ARG ALA SER SEQRES 3 A 212 GLN SER ILE SER ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 A 212 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR THR SER SEQRES 5 A 212 GLN SER MET SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 A 212 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 A 212 GLU THR GLU ASP PHE GLY VAL TYR PHE CYS GLN GLN SER SEQRES 8 A 212 GLY SER TRP PRO ARG THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 A 212 ASP ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 A 212 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 A 212 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 A 212 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 A 212 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 A 212 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 A 212 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 A 212 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 A 212 PHE ASN ARG ASN SEQRES 1 B 218 GLU VAL GLN LEU GLN GLU SER GLY ALA GLU LEU MET LYS SEQRES 2 B 218 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA THR GLY SEQRES 3 B 218 TYR THR PHE THR THR TYR TRP ILE GLU TRP ILE LYS GLN SEQRES 4 B 218 ARG PRO GLY HIS SER LEU GLU TRP ILE GLY GLU ILE LEU SEQRES 5 B 218 PRO GLY SER ASP SER THR TYR TYR ASN GLU LYS VAL LYS SEQRES 6 B 218 GLY LYS VAL THR PHE THR ALA ASP ALA SER SER ASN THR SEQRES 7 B 218 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 B 218 ALA VAL TYR TYR CYS ALA ARG GLY ASP GLY PHE TYR VAL SEQRES 9 B 218 TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SER ALA SEQRES 10 B 218 SER THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 B 218 SER ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS SEQRES 12 B 218 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR SEQRES 13 B 218 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 B 218 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 B 218 SER VAL THR VAL PRO SER SER PRO TRP PRO SER GLU THR SEQRES 16 B 218 VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 B 218 VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 C 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 C 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 C 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 C 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 C 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 C 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 C 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 C 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 C 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 C 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU SEQRES 1 D 212 ASP ILE GLU LEU THR GLN SER PRO ALA THR LEU SER VAL SEQRES 2 D 212 THR PRO GLY ASP SER VAL SER LEU SER CYS ARG ALA SER SEQRES 3 D 212 GLN SER ILE SER ASN ASN LEU HIS TRP TYR GLN GLN LYS SEQRES 4 D 212 SER HIS GLU SER PRO ARG LEU LEU ILE LYS TYR THR SER SEQRES 5 D 212 GLN SER MET SER GLY ILE PRO SER ARG PHE SER GLY SER SEQRES 6 D 212 GLY SER GLY THR ASP PHE THR LEU SER ILE ASN SER VAL SEQRES 7 D 212 GLU THR GLU ASP PHE GLY VAL TYR PHE CYS GLN GLN SER SEQRES 8 D 212 GLY SER TRP PRO ARG THR PHE GLY GLY GLY THR LYS LEU SEQRES 9 D 212 ASP ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER ILE SEQRES 10 D 212 PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY ALA SEQRES 11 D 212 SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS ASP SEQRES 12 D 212 ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG GLN SEQRES 13 D 212 ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER LYS SEQRES 14 D 212 ASP SER THR TYR SER MET SER SER THR LEU THR LEU THR SEQRES 15 D 212 LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS GLU SEQRES 16 D 212 ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SER SEQRES 17 D 212 PHE ASN ARG ASN SEQRES 1 E 218 GLU VAL GLN LEU GLN GLU SER GLY ALA GLU LEU MET LYS SEQRES 2 E 218 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA THR GLY SEQRES 3 E 218 TYR THR PHE THR THR TYR TRP ILE GLU TRP ILE LYS GLN SEQRES 4 E 218 ARG PRO GLY HIS SER LEU GLU TRP ILE GLY GLU ILE LEU SEQRES 5 E 218 PRO GLY SER ASP SER THR TYR TYR ASN GLU LYS VAL LYS SEQRES 6 E 218 GLY LYS VAL THR PHE THR ALA ASP ALA SER SER ASN THR SEQRES 7 E 218 ALA TYR MET GLN LEU SER SER LEU THR SER GLU ASP SER SEQRES 8 E 218 ALA VAL TYR TYR CYS ALA ARG GLY ASP GLY PHE TYR VAL SEQRES 9 E 218 TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SER ALA SEQRES 10 E 218 SER THR THR PRO PRO SER VAL TYR PRO LEU ALA PRO GLY SEQRES 11 E 218 SER ALA ALA GLN THR ASN SER MET VAL THR LEU GLY CYS SEQRES 12 E 218 LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR VAL THR SEQRES 13 E 218 TRP ASN SER GLY SER LEU SER SER GLY VAL HIS THR PHE SEQRES 14 E 218 PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SER SER SEQRES 15 E 218 SER VAL THR VAL PRO SER SER PRO TRP PRO SER GLU THR SEQRES 16 E 218 VAL THR CYS ASN VAL ALA HIS PRO ALA SER SER THR LYS SEQRES 17 E 218 VAL ASP LYS LYS ILE VAL PRO ARG ASP CYS SEQRES 1 F 129 LYS VAL PHE GLY ARG CYS GLU LEU ALA ALA ALA MET LYS SEQRES 2 F 129 ARG HIS GLY LEU ASP ASN TYR ARG GLY TYR SER LEU GLY SEQRES 3 F 129 ASN TRP VAL CYS ALA ALA LYS PHE GLU SER ASN PHE ASN SEQRES 4 F 129 THR GLN ALA THR ASN ARG ASN THR ASP GLY SER THR ASP SEQRES 5 F 129 TYR GLY ILE LEU GLN ILE ASN SER ARG TRP TRP CYS ASN SEQRES 6 F 129 ASP GLY ARG THR PRO GLY SER ARG ASN LEU CYS ASN ILE SEQRES 7 F 129 PRO CYS SER ALA LEU LEU SER SER ASP ILE THR ALA SER SEQRES 8 F 129 VAL ASN CYS ALA LYS LYS ILE VAL SER ASP GLY ASN GLY SEQRES 9 F 129 MET ASN ALA TRP VAL ALA TRP ARG ASN ARG CYS LYS GLY SEQRES 10 F 129 THR ASP VAL GLN ALA TRP ILE ARG GLY CYS ARG LEU FORMUL 7 HOH *887(H2 O) HELIX 1 1 GLU A 79 PHE A 83 5 5 HELIX 2 2 SER A 121 SER A 127 1 7 HELIX 3 3 LYS A 183 HIS A 189 1 7 HELIX 4 4 GLU B 362 LYS B 365 5 4 HELIX 5 5 ALA B 374 SER B 376 5 3 HELIX 6 6 THR B 387 SER B 391 5 5 HELIX 7 7 SER B 459 SER B 461 5 3 HELIX 8 8 PRO B 503 SER B 506 5 4 HELIX 9 9 GLY C 604 HIS C 615 1 12 HELIX 10 10 ASN C 619 TYR C 623 5 5 HELIX 11 11 SER C 624 ASN C 637 1 14 HELIX 12 12 PRO C 679 SER C 685 5 7 HELIX 13 13 ILE C 688 VAL C 699 1 12 HELIX 14 14 ASN C 703 ALA C 707 5 5 HELIX 15 15 TRP C 708 CYS C 715 1 8 HELIX 16 16 ASP C 719 ARG C 725 5 7 HELIX 17 17 GLU D 979 PHE D 983 5 5 HELIX 18 18 SER D 1021 GLY D 1028 1 8 HELIX 19 19 LYS D 1083 HIS D 1089 1 7 HELIX 20 20 GLU E 1262 LYS E 1265 5 4 HELIX 21 21 ALA E 1274 SER E 1276 5 3 HELIX 22 22 THR E 1287 SER E 1291 5 5 HELIX 23 23 SER E 1359 SER E 1361 5 3 HELIX 24 24 PRO E 1403 SER E 1406 5 4 HELIX 25 25 GLY F 1504 HIS F 1515 1 12 HELIX 26 26 ASN F 1519 TYR F 1523 5 5 HELIX 27 27 SER F 1524 ASN F 1537 1 14 HELIX 28 28 PRO F 1579 SER F 1585 5 7 HELIX 29 29 ILE F 1588 VAL F 1599 1 12 HELIX 30 30 ASN F 1603 ALA F 1607 5 5 HELIX 31 31 TRP F 1608 CYS F 1615 1 8 HELIX 32 32 ASP F 1619 ARG F 1625 5 7 SHEET 1 A 4 LEU A 4 SER A 7 0 SHEET 2 A 4 VAL A 19 ALA A 25 -1 O ARG A 24 N THR A 5 SHEET 3 A 4 ASP A 70 ILE A 75 -1 O ILE A 75 N VAL A 19 SHEET 4 A 4 PHE A 62 SER A 67 -1 N SER A 63 O SER A 74 SHEET 1 B 5 GLN A 53 SER A 54 0 SHEET 2 B 5 ARG A 45 LYS A 49 -1 N LYS A 49 O GLN A 53 SHEET 3 B 5 LEU A 33 GLN A 38 -1 N TRP A 35 O LEU A 47 SHEET 4 B 5 GLY A 84 GLN A 90 -1 O VAL A 85 N GLN A 38 SHEET 5 B 5 THR A 97 PHE A 98 -1 O THR A 97 N GLN A 90 SHEET 1 C 6 GLN A 53 SER A 54 0 SHEET 2 C 6 ARG A 45 LYS A 49 -1 N LYS A 49 O GLN A 53 SHEET 3 C 6 LEU A 33 GLN A 38 -1 N TRP A 35 O LEU A 47 SHEET 4 C 6 GLY A 84 GLN A 90 -1 O VAL A 85 N GLN A 38 SHEET 5 C 6 THR A 102 ILE A 106 -1 O LEU A 104 N GLY A 84 SHEET 6 C 6 THR A 10 VAL A 13 1 N LEU A 11 O ASP A 105 SHEET 1 D 4 THR A 114 PHE A 118 0 SHEET 2 D 4 GLY A 129 PHE A 139 -1 O ASN A 137 N THR A 114 SHEET 3 D 4 TYR A 173 THR A 182 -1 O MET A 175 N LEU A 136 SHEET 4 D 4 VAL A 159 TRP A 163 -1 N SER A 162 O SER A 176 SHEET 1 E 4 SER A 153 ARG A 155 0 SHEET 2 E 4 ASN A 145 ILE A 150 -1 N ILE A 150 O SER A 153 SHEET 3 E 4 SER A 191 THR A 197 -1 O GLU A 195 N LYS A 147 SHEET 4 E 4 ILE A 205 ASN A 210 -1 O ILE A 205 N ALA A 196 SHEET 1 F 4 GLN B 303 GLU B 306 0 SHEET 2 F 4 VAL B 318 THR B 325 -1 O LYS B 323 N GLN B 305 SHEET 3 F 4 THR B 378 LEU B 383 -1 O ALA B 379 N CYS B 322 SHEET 4 F 4 VAL B 368 ASP B 373 -1 N THR B 371 O TYR B 380 SHEET 1 G 6 GLU B 310 MET B 312 0 SHEET 2 G 6 THR B 410 VAL B 414 1 O THR B 411 N GLU B 310 SHEET 3 G 6 ALA B 392 ARG B 398 -1 N ALA B 392 O LEU B 412 SHEET 4 G 6 ILE B 334 GLN B 339 -1 N GLU B 335 O ALA B 397 SHEET 5 G 6 GLU B 346 LEU B 352 -1 O ILE B 348 N TRP B 336 SHEET 6 G 6 SER B 357 TYR B 360 -1 O SER B 357 N LEU B 352 SHEET 1 H 4 SER B 423 LEU B 427 0 SHEET 2 H 4 VAL B 439 TYR B 448 -1 O LEU B 444 N TYR B 425 SHEET 3 H 4 LEU B 477 VAL B 486 -1 O VAL B 486 N VAL B 439 SHEET 4 H 4 VAL B 466 THR B 468 -1 N HIS B 467 O SER B 483 SHEET 1 I 4 SER B 423 LEU B 427 0 SHEET 2 I 4 VAL B 439 TYR B 448 -1 O LEU B 444 N TYR B 425 SHEET 3 I 4 LEU B 477 VAL B 486 -1 O VAL B 486 N VAL B 439 SHEET 4 I 4 VAL B 472 GLN B 474 -1 N GLN B 474 O LEU B 477 SHEET 1 J 3 THR B 454 TRP B 457 0 SHEET 2 J 3 VAL B 496 HIS B 502 -1 O ASN B 499 N THR B 456 SHEET 3 J 3 THR B 507 ILE B 513 -1 O VAL B 509 N VAL B 500 SHEET 1 K 3 THR C 643 ARG C 645 0 SHEET 2 K 3 THR C 651 TYR C 653 -1 O ASP C 652 N ASN C 644 SHEET 3 K 3 ILE C 658 ASN C 659 -1 O ILE C 658 N TYR C 653 SHEET 1 L 4 LEU D 904 SER D 907 0 SHEET 2 L 4 VAL D 919 ALA D 925 -1 O ARG D 924 N THR D 905 SHEET 3 L 4 ASP D 970 ILE D 975 -1 O PHE D 971 N CYS D 923 SHEET 4 L 4 PHE D 962 SER D 967 -1 N SER D 963 O SER D 974 SHEET 1 M 5 GLN D 953 SER D 954 0 SHEET 2 M 5 ARG D 945 LYS D 949 -1 N LYS D 949 O GLN D 953 SHEET 3 M 5 LEU D 933 GLN D 938 -1 N TRP D 935 O LEU D 947 SHEET 4 M 5 GLY D 984 GLN D 990 -1 O VAL D 985 N GLN D 938 SHEET 5 M 5 THR D 997 PHE D 998 -1 O THR D 997 N GLN D 990 SHEET 1 N 6 GLN D 953 SER D 954 0 SHEET 2 N 6 ARG D 945 LYS D 949 -1 N LYS D 949 O GLN D 953 SHEET 3 N 6 LEU D 933 GLN D 938 -1 N TRP D 935 O LEU D 947 SHEET 4 N 6 GLY D 984 GLN D 990 -1 O VAL D 985 N GLN D 938 SHEET 5 N 6 THR D1002 ILE D1006 -1 O LEU D1004 N GLY D 984 SHEET 6 N 6 THR D 910 VAL D 913 1 N LEU D 911 O ASP D1005 SHEET 1 O 4 THR D1014 PHE D1018 0 SHEET 2 O 4 GLY D1029 PHE D1039 -1 O VAL D1033 N PHE D1018 SHEET 3 O 4 TYR D1073 THR D1082 -1 O LEU D1079 N VAL D1032 SHEET 4 O 4 VAL D1059 TRP D1063 -1 N SER D1062 O SER D1076 SHEET 1 P 4 SER D1053 GLU D1054 0 SHEET 2 P 4 ASN D1045 ILE D1050 -1 N ILE D1050 O SER D1053 SHEET 3 P 4 SER D1091 THR D1097 -1 O GLU D1095 N LYS D1047 SHEET 4 P 4 ILE D1105 ASN D1110 -1 O ILE D1105 N ALA D1096 SHEET 1 Q 4 GLN E1203 GLU E1206 0 SHEET 2 Q 4 VAL E1218 THR E1225 -1 O LYS E1223 N GLN E1205 SHEET 3 Q 4 THR E1278 LEU E1283 -1 O MET E1281 N ILE E1220 SHEET 4 Q 4 VAL E1268 ASP E1273 -1 N THR E1271 O TYR E1280 SHEET 1 R 6 GLU E1210 MET E1212 0 SHEET 2 R 6 THR E1310 VAL E1314 1 O THR E1311 N GLU E1210 SHEET 3 R 6 ALA E1292 ARG E1298 -1 N ALA E1292 O LEU E1312 SHEET 4 R 6 ILE E1234 ARG E1240 -1 N ILE E1237 O TYR E1295 SHEET 5 R 6 HIS E1243 LEU E1252 -1 O GLU E1246 N LYS E1238 SHEET 6 R 6 SER E1257 TYR E1260 -1 O SER E1257 N LEU E1252 SHEET 1 S 4 SER E1323 LEU E1327 0 SHEET 2 S 4 MET E1338 TYR E1348 -1 O LEU E1344 N TYR E1325 SHEET 3 S 4 LEU E1377 PRO E1387 -1 O LEU E1380 N VAL E1345 SHEET 4 S 4 VAL E1366 THR E1368 -1 N HIS E1367 O SER E1383 SHEET 1 T 4 SER E1323 LEU E1327 0 SHEET 2 T 4 MET E1338 TYR E1348 -1 O LEU E1344 N TYR E1325 SHEET 3 T 4 LEU E1377 PRO E1387 -1 O LEU E1380 N VAL E1345 SHEET 4 T 4 VAL E1372 GLN E1374 -1 N GLN E1374 O LEU E1377 SHEET 1 U 3 THR E1354 TRP E1357 0 SHEET 2 U 3 THR E1397 HIS E1402 -1 O ASN E1399 N THR E1356 SHEET 3 U 3 THR E1407 LYS E1412 -1 O VAL E1409 N VAL E1400 SHEET 1 V 3 THR F1543 ARG F1545 0 SHEET 2 V 3 THR F1551 TYR F1553 -1 O ASP F1552 N ASN F1544 SHEET 3 V 3 ILE F1558 ASN F1559 -1 O ILE F1558 N TYR F1553 SSBOND 1 CYS A 23 CYS A 88 1555 1555 2.04 SSBOND 2 CYS A 134 CYS A 194 1555 1555 2.03 SSBOND 3 CYS B 322 CYS B 396 1555 1555 2.04 SSBOND 4 CYS B 443 CYS B 498 1555 1555 2.03 SSBOND 5 CYS C 606 CYS C 727 1555 1555 2.04 SSBOND 6 CYS C 630 CYS C 715 1555 1555 2.03 SSBOND 7 CYS C 664 CYS C 680 1555 1555 2.05 SSBOND 8 CYS C 676 CYS C 694 1555 1555 2.03 SSBOND 9 CYS D 923 CYS D 988 1555 1555 2.04 SSBOND 10 CYS D 1034 CYS D 1094 1555 1555 2.04 SSBOND 11 CYS E 1222 CYS E 1296 1555 1555 2.03 SSBOND 12 CYS E 1343 CYS E 1398 1555 1555 2.03 SSBOND 13 CYS F 1506 CYS F 1627 1555 1555 2.04 SSBOND 14 CYS F 1530 CYS F 1615 1555 1555 2.03 SSBOND 15 CYS F 1564 CYS F 1580 1555 1555 2.03 SSBOND 16 CYS F 1576 CYS F 1594 1555 1555 2.03 CISPEP 1 SER A 7 PRO A 8 0 -0.31 CISPEP 2 TRP A 94 PRO A 95 0 0.30 CISPEP 3 TYR A 140 PRO A 141 0 -0.07 CISPEP 4 PHE B 449 PRO B 450 0 -0.35 CISPEP 5 GLU B 451 PRO B 452 0 0.15 CISPEP 6 TRP B 491 PRO B 492 0 0.10 CISPEP 7 SER D 907 PRO D 908 0 -0.46 CISPEP 8 TRP D 994 PRO D 995 0 0.10 CISPEP 9 TYR D 1040 PRO D 1041 0 0.17 CISPEP 10 PHE E 1349 PRO E 1350 0 -0.28 CISPEP 11 GLU E 1351 PRO E 1352 0 0.07 CISPEP 12 TRP E 1391 PRO E 1392 0 0.35 CRYST1 44.660 73.750 83.780 66.59 74.74 85.44 P 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022391 -0.001786 -0.005879 0.00000 SCALE2 0.000000 0.013602 -0.005785 0.00000 SCALE3 0.000000 0.000000 0.013445 0.00000