HEADER HYDROLASE 17-APR-03 1P3C TITLE GLUTAMYL ENDOPEPTIDASE FROM BACILLUS INTERMEDIUS COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTAMYL-ENDOPEPTIDASE; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS INTERMEDIUS; SOURCE 3 ORGANISM_TAXID: 1400; SOURCE 4 STRAIN: 3-19 KEYWDS SERINE PROTEASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.MEIJERS,E.V.BLAGOVA,V.M.LEVDIKOV,G.N.RUDENSKAYA,G.G.CHESTUKHINA, AUTHOR 2 T.V.AKIMKINA,S.V.KOSTROV,V.S.LAMZIN,I.P.KURANOVA REVDAT 5 13-NOV-24 1P3C 1 REMARK REVDAT 4 16-AUG-23 1P3C 1 REMARK REVDAT 3 13-JUL-11 1P3C 1 VERSN REVDAT 2 24-FEB-09 1P3C 1 VERSN REVDAT 1 27-APR-04 1P3C 0 JRNL AUTH R.MEIJERS,E.V.BLAGOVA,V.M.LEVDIKOV,G.N.RUDENSKAYA, JRNL AUTH 2 G.G.CHESTUKHINA,T.V.AKIMKINA,S.V.KOSTROV,V.S.LAMZIN, JRNL AUTH 3 I.P.KURANOVA JRNL TITL THE CRYSTAL STRUCTURE OF GLUTAMYL ENDOPEPTIDASE FROM JRNL TITL 2 BACILLUS INTERMEDIUS REVEALS A STRUCTURAL LINK BETWEEN JRNL TITL 3 ZYMOGEN ACTIVATION AND CHARGE COMPENSATION. JRNL REF BIOCHEMISTRY V. 43 2784 2004 JRNL REFN ISSN 0006-2960 JRNL PMID 15005613 JRNL DOI 10.1021/BI035354S REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : -2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.6 REMARK 3 NUMBER OF REFLECTIONS : 33010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 1132 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.54 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2324 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.1930 REMARK 3 BIN FREE R VALUE SET COUNT : 0 REMARK 3 BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1600 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 155 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.67000 REMARK 3 B22 (A**2) : 0.19000 REMARK 3 B33 (A**2) : 0.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.030 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.822 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.980 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1698 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1466 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2323 ; 1.430 ; 1.928 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3426 ; 0.826 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 5.388 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.097 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1976 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 351 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 265 ; 0.186 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1666 ; 0.247 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 1024 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 83 ; 0.206 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 6 ; 0.099 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 26 ; 0.307 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 13 ; 0.381 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1093 ; 0.914 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1773 ; 1.718 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 605 ; 2.574 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 544 ; 4.216 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 21 REMARK 3 RESIDUE RANGE : A 122 A 200 REMARK 3 ORIGIN FOR THE GROUP (A): 11.4804 27.4194 9.9506 REMARK 3 T TENSOR REMARK 3 T11: 0.0133 T22: 0.0162 REMARK 3 T33: 0.0055 T12: -0.0018 REMARK 3 T13: 0.0081 T23: -0.0039 REMARK 3 L TENSOR REMARK 3 L11: 0.4182 L22: 0.2314 REMARK 3 L33: 0.2740 L12: -0.1252 REMARK 3 L13: -0.0322 L23: -0.0887 REMARK 3 S TENSOR REMARK 3 S11: 0.0035 S12: 0.1012 S13: -0.0523 REMARK 3 S21: -0.0082 S22: -0.0252 S23: -0.0072 REMARK 3 S31: 0.0162 S32: -0.0193 S33: 0.0217 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 22 A 121 REMARK 3 RESIDUE RANGE : A 201 A 215 REMARK 3 ORIGIN FOR THE GROUP (A): 15.7410 33.2928 23.9144 REMARK 3 T TENSOR REMARK 3 T11: 0.0163 T22: 0.0059 REMARK 3 T33: 0.0122 T12: 0.0004 REMARK 3 T13: 0.0035 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 0.5529 L22: 0.0589 REMARK 3 L33: 0.2991 L12: -0.0424 REMARK 3 L13: -0.0377 L23: -0.0941 REMARK 3 S TENSOR REMARK 3 S11: -0.0029 S12: -0.0465 S13: 0.0196 REMARK 3 S21: 0.0217 S22: 0.0005 S23: -0.0115 REMARK 3 S31: -0.0342 S32: 0.0105 S33: 0.0024 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 NO REFLECTIONS WERE EXCLUDED ON THE BASIS OF A SIGMA CUTOFF REMARK 4 REMARK 4 1P3C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 18-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000018955. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-JAN-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : EMBL/DESY, HAMBURG REMARK 200 BEAMLINE : X11 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.10 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33011 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.500 REMARK 200 RESOLUTION RANGE LOW (A) : 19.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1AGJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.01 M TRIS-HCL BUFFER, PH 7.0, 2 MM REMARK 280 CACL2, 1.2 M POTASSIUM PHOSPHATE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 41.07350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 41.07350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 29.74700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 42.71850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 29.74700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 42.71850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 41.07350 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 29.74700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 42.71850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 41.07350 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 29.74700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 42.71850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 226 O HOH A 228 1.95 REMARK 500 O HOH A 227 O HOH A 248 2.00 REMARK 500 O HOH A 224 O HOH A 238 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 287 O HOH A 287 3655 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 69 CB - CG - OD2 ANGL. DEV. = 5.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 106 57.32 -90.78 REMARK 500 THR A 120 -61.42 -108.15 REMARK 500 ASP A 156 -164.75 -120.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1P3E RELATED DB: PDB DBREF 1P3C A 1 215 UNP Q9EXR9 Q9EXR9_BACIN 89 303 SEQRES 1 A 215 VAL VAL ILE GLY ASP ASP GLY ARG THR LYS VAL ALA ASN SEQRES 2 A 215 THR ARG VAL ALA PRO TYR ASN SER ILE ALA TYR ILE THR SEQRES 3 A 215 PHE GLY GLY SER SER CYS THR GLY THR LEU ILE ALA PRO SEQRES 4 A 215 ASN LYS ILE LEU THR ASN GLY HIS CYS VAL TYR ASN THR SEQRES 5 A 215 ALA SER ARG SER TYR SER ALA LYS GLY SER VAL TYR PRO SEQRES 6 A 215 GLY MET ASN ASP SER THR ALA VAL ASN GLY SER ALA ASN SEQRES 7 A 215 MET THR GLU PHE TYR VAL PRO SER GLY TYR ILE ASN THR SEQRES 8 A 215 GLY ALA SER GLN TYR ASP PHE ALA VAL ILE LYS THR ASP SEQRES 9 A 215 THR ASN ILE GLY ASN THR VAL GLY TYR ARG SER ILE ARG SEQRES 10 A 215 GLN VAL THR ASN LEU THR GLY THR THR ILE LYS ILE SER SEQRES 11 A 215 GLY TYR PRO GLY ASP LYS MET ARG SER THR GLY LYS VAL SEQRES 12 A 215 SER GLN TRP GLU MET SER GLY SER VAL THR ARG GLU ASP SEQRES 13 A 215 THR ASN LEU ALA TYR TYR THR ILE ASP THR PHE SER GLY SEQRES 14 A 215 ASN SER GLY SER ALA MET LEU ASP GLN ASN GLN GLN ILE SEQRES 15 A 215 VAL GLY VAL HIS ASN ALA GLY TYR SER ASN GLY THR ILE SEQRES 16 A 215 ASN GLY GLY PRO LYS ALA THR ALA ALA PHE VAL GLU PHE SEQRES 17 A 215 ILE ASN TYR ALA LYS ALA GLN FORMUL 2 HOH *155(H2 O) HELIX 1 1 PRO A 18 ASN A 20 5 3 HELIX 2 2 ASN A 45 VAL A 49 1 5 HELIX 3 3 PRO A 85 GLY A 92 1 8 HELIX 4 4 ALA A 93 ASP A 97 5 5 HELIX 5 5 ASN A 106 GLY A 112 1 7 HELIX 6 6 PRO A 133 GLY A 141 1 9 HELIX 7 7 THR A 202 ALA A 214 1 13 SHEET 1 A 5 THR A 9 LYS A 10 0 SHEET 2 A 5 TRP A 146 SER A 151 -1 O GLU A 147 N THR A 9 SHEET 3 A 5 THR A 126 GLY A 131 -1 N ILE A 127 O GLY A 150 SHEET 4 A 5 ALA A 174 LEU A 176 -1 O LEU A 176 N LYS A 128 SHEET 5 A 5 ILE A 182 VAL A 185 -1 O GLY A 184 N MET A 175 SHEET 1 B 7 ILE A 22 THR A 26 0 SHEET 2 B 7 SER A 31 ALA A 38 -1 O GLY A 34 N ALA A 23 SHEET 3 B 7 LYS A 41 THR A 44 -1 O LEU A 43 N THR A 35 SHEET 4 B 7 ALA A 99 THR A 103 -1 O ALA A 99 N THR A 44 SHEET 5 B 7 ALA A 77 TYR A 83 -1 N TYR A 83 O VAL A 100 SHEET 6 B 7 SER A 62 PRO A 65 -1 N VAL A 63 O ALA A 77 SHEET 7 B 7 ILE A 22 THR A 26 -1 N TYR A 24 O TYR A 64 SHEET 1 C 2 TYR A 50 ASN A 51 0 SHEET 2 C 2 SER A 56 TYR A 57 -1 O SER A 56 N ASN A 51 SHEET 1 D 4 ARG A 154 GLU A 155 0 SHEET 2 D 4 LEU A 159 TYR A 162 -1 O TYR A 161 N ARG A 154 SHEET 3 D 4 ILE A 195 PRO A 199 -1 O ASN A 196 N TYR A 162 SHEET 4 D 4 ALA A 188 TYR A 190 -1 N TYR A 190 O ILE A 195 SSBOND 1 CYS A 32 CYS A 48 1555 1555 2.03 CISPEP 1 ALA A 17 PRO A 18 0 0.07 CRYST1 59.494 85.437 82.147 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016808 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011705 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012173 0.00000