HEADER MEMBRANE PROTEIN 23-APR-03 1P4P TITLE OUTER SURFACE PROTEIN B OF B. BURGDORFERI: CRYSTAL STRUCTURE OF THE C- TITLE 2 TERMINAL FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: OUTER SURFACE PROTEIN B; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: OSPB C-TERMINAL FRAGMENT; COMPND 5 SYNONYM: OSPB; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BORRELIA BURGDORFERI; SOURCE 3 ORGANISM_COMMON: LYME DISEASE SPIROCHETE; SOURCE 4 ORGANISM_TAXID: 139; SOURCE 5 GENE: OSPB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL2(DE3)/PLYSS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET9C KEYWDS INTERMOLECULAR BETA SHEET, EXTENDED BETA SHEET, MEMBRANE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.BECKER,J.BUNIKIS,B.D.LADE,J.J.DUNN,A.G.BARBOUR,C.L.LAWSON REVDAT 4 16-AUG-23 1P4P 1 REMARK REVDAT 3 24-FEB-09 1P4P 1 VERSN REVDAT 2 03-MAY-05 1P4P 1 JRNL REVDAT 1 04-MAY-04 1P4P 0 JRNL AUTH M.BECKER,J.BUNIKIS,B.D.LADE,J.J.DUNN,A.G.BARBOUR,C.L.LAWSON JRNL TITL STRUCTURAL INVESTIGATION OF BORRELIA BURGDORFERI OSPB, A JRNL TITL 2 BACTERICIDALFAB TARGET. JRNL REF J.BIOL.CHEM. V. 280 17363 2005 JRNL REFN ISSN 0021-9258 JRNL PMID 15713683 JRNL DOI 10.1074/JBC.M412842200 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.0 REMARK 3 NUMBER OF REFLECTIONS : 7983 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.260 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 848 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1059 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 118 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 5.19000 REMARK 3 B22 (A**2) : -10.80000 REMARK 3 B33 (A**2) : 5.63000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ANISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED CNS FOR SIMULATED ANNEALING, REMARK 3 FOLLOWED BY CONJUGATE GRADIENT MINIMIZATION REMARK 3 AGAINST THE MAXIMUM LIKELIHOOD FUNCTION. REMARK 3 THEN RAN REFMAC, AND FOLLOWED WITH 1 STEP OF REMARK 3 B-FACTOR REFINEMENT IN CNS. REMARK 3 THE LOOP FROM RESIDUE 218 TO RESIDUE 221 (LYS ASP GLY LYS) REMARK 3 IS POORLY ORDERED (IS NOT CLEARLY DEFINED IN THE DENSITY). REMARK 4 REMARK 4 1P4P COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-APR-03. REMARK 100 THE DEPOSITION ID IS D_1000019003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAR-97 REMARK 200 TEMPERATURE (KELVIN) : 283 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979, 1.073 REMARK 200 MONOCHROMATOR : TWO-CRYSTAL SI (111) REMARK 200 OPTICS : FOCUSING MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8090 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -10.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.8 REMARK 200 DATA REDUNDANCY : 23.70 REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 34.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.03 REMARK 200 COMPLETENESS FOR SHELL (%) : 77.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.20600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 12.60 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1OSP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.05 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.02 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG550MME, BICINE, SODIUM BROMIDE, REMARK 280 SODIUM CITRATE, PH 9.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 79.41000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 79.41000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 15.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 25.83000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 15.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 25.83000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 79.41000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 15.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 25.83000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 79.41000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 15.40000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 25.83000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 152 REMARK 465 ASN A 153 REMARK 465 LYS A 154 REMARK 465 LEU A 155 REMARK 465 ASP A 156 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 217 109.00 61.79 REMARK 500 LYS A 218 56.27 -166.22 REMARK 500 ASP A 219 28.75 42.31 REMARK 500 LYS A 221 -106.39 65.90 REMARK 500 ASP A 251 -127.28 54.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OSP RELATED DB: PDB REMARK 900 OSPA + AN FAB REMARK 900 RELATED ID: 1FJ1 RELATED DB: PDB REMARK 900 OSPA + AN FAB REMARK 900 RELATED ID: 1GGQ RELATED DB: PDB REMARK 900 OSPC DBREF 1P4P A 152 296 UNP P17739 OSPB1_BORBU 152 296 SEQRES 1 A 145 ALA ASN LYS LEU ASP SER LYS LYS LEU THR ARG SER ASN SEQRES 2 A 145 GLY THR THR LEU GLU TYR SER GLN ILE THR ASP ALA ASP SEQRES 3 A 145 ASN ALA THR LYS ALA VAL GLU THR LEU LYS ASN SER ILE SEQRES 4 A 145 LYS LEU GLU GLY SER LEU VAL VAL GLY LYS THR THR VAL SEQRES 5 A 145 GLU ILE LYS GLU GLY THR VAL THR LEU LYS ARG GLU ILE SEQRES 6 A 145 GLU LYS ASP GLY LYS VAL LYS VAL PHE LEU ASN ASP THR SEQRES 7 A 145 ALA GLY SER ASN LYS LYS THR GLY LYS TRP GLU ASP SER SEQRES 8 A 145 THR SER THR LEU THR ILE SER ALA ASP SER LYS LYS THR SEQRES 9 A 145 LYS ASP LEU VAL PHE LEU THR ASP GLY THR ILE THR VAL SEQRES 10 A 145 GLN GLN TYR ASN THR ALA GLY THR SER LEU GLU GLY SER SEQRES 11 A 145 ALA SER GLU ILE LYS ASN LEU SER GLU LEU LYS ASN ALA SEQRES 12 A 145 LEU LYS FORMUL 2 HOH *118(H2 O) HELIX 1 1 ASN A 287 LEU A 295 1 9 SHEET 1 A 7 LYS A 158 THR A 161 0 SHEET 2 A 7 THR A 167 ILE A 173 -1 O TYR A 170 N LYS A 158 SHEET 3 A 7 ALA A 179 LEU A 186 -1 O VAL A 183 N GLU A 169 SHEET 4 A 7 ILE A 190 VAL A 197 -1 O LEU A 196 N ALA A 179 SHEET 5 A 7 LYS A 200 GLU A 207 -1 O THR A 202 N SER A 195 SHEET 6 A 7 VAL A 210 ILE A 216 -1 O ILE A 216 N THR A 201 SHEET 7 A 7 VAL A 222 ASP A 228 -1 O LYS A 223 N GLU A 215 SHEET 1 B 5 LYS A 235 GLU A 240 0 SHEET 2 B 5 THR A 245 ALA A 250 -1 O THR A 245 N GLU A 240 SHEET 3 B 5 LYS A 253 PHE A 260 -1 O LEU A 258 N LEU A 246 SHEET 4 B 5 ILE A 266 GLN A 270 -1 O GLN A 269 N ASP A 257 SHEET 5 B 5 SER A 283 GLU A 284 -1 O SER A 283 N VAL A 268 CRYST1 30.800 51.660 158.820 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.032468 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019357 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006296 0.00000