HEADER RNA BINDING PROTEIN/RNA 30-APR-03 1P6V TITLE CRYSTAL STRUCTURE OF THE TRNA DOMAIN OF TRANSFER-MESSENGER RNA IN TITLE 2 COMPLEX WITH SMPB COMPND MOL_ID: 1; COMPND 2 MOLECULE: 45-MER; COMPND 3 CHAIN: B, D; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: SSRA-BINDING PROTEIN; COMPND 7 CHAIN: A, C; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: IN VITRO TRANSCRIPTION OF AQUIFEX AEOLICUS SOURCE 4 TMRNA[DELTA]; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: AQUIFEX AEOLICUS; SOURCE 7 ORGANISM_TAXID: 63363; SOURCE 8 GENE: SMPB; SOURCE 9 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 10 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS SMPB, TMRNA, TRANS-TRANSLATION, PROTEIN-RNA COMPLEX, RNA BINDING KEYWDS 2 PROTEIN-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR S.GUTMANN,P.W.HAEBEL,L.METZINGER,M.SUTTER,B.FELDEN,N.BAN REVDAT 4 14-FEB-24 1P6V 1 REMARK REVDAT 3 24-FEB-09 1P6V 1 VERSN REVDAT 2 26-JUL-05 1P6V 1 DBREF REVDAT 1 12-AUG-03 1P6V 0 JRNL AUTH S.GUTMANN,P.W.HAEBEL,L.METZINGER,M.SUTTER,B.FELDEN,N.BAN JRNL TITL CRYSTAL STRUCTURE OF THE TRANSFER-RNA DOMAIN OF JRNL TITL 2 TRANSFER-MESSENGER RNA IN COMPLEX WITH SMPB JRNL REF NATURE V. 424 699 2003 JRNL REFN ISSN 0028-0836 JRNL PMID 12904796 JRNL DOI 10.1038/NATURE01831 REMARK 2 REMARK 2 RESOLUTION. 3.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.4 REMARK 3 NUMBER OF REFLECTIONS : 16854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.302 REMARK 3 FREE R VALUE : 0.360 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1647 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.40 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2332 REMARK 3 BIN R VALUE (WORKING SET) : 0.4130 REMARK 3 BIN FREE R VALUE : 0.4600 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 212 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.032 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2054 REMARK 3 NUCLEIC ACID ATOMS : 1465 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.4 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 15.09000 REMARK 3 B22 (A**2) : 15.09000 REMARK 3 B33 (A**2) : -30.18000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.54 REMARK 3 ESD FROM SIGMAA (A) : 0.66 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.71 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.71 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.360 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : GROUPED B-FACTORS REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.22 REMARK 3 BSOL : 90.77 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1P6V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019081. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.008 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17756 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.200 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.4 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07000 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 23.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.30 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.87000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 76.25 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: ISOPROPANOL, CACODYLATE, AMMONIUM REMARK 280 ACETATE, MAGNESIUM ACETATE, CALCIUM ACETATE, PH 6.8, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 103.52500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 49.84000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 49.84000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 155.28750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 49.84000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 49.84000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 51.76250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 49.84000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.84000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 155.28750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 49.84000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.84000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 51.76250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 103.52500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: SMPB (CHAIN A) AND TMRNA[DELTA] (CHAIN B) FOR THE REMARK 300 RIBONUCLEOPROTEIN COMPLEX REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 G B 1 REMARK 465 G B 2 REMARK 465 G B 3 REMARK 465 G B 4 REMARK 465 G B 5 REMARK 465 C B 6 REMARK 465 G B 7 REMARK 465 G B 8 REMARK 465 A B 9 REMARK 465 A B 10 REMARK 465 A B 11 REMARK 465 G B 12 REMARK 465 C B 58 REMARK 465 G B 59 REMARK 465 C B 60 REMARK 465 C B 61 REMARK 465 U B 62 REMARK 465 C B 63 REMARK 465 C B 64 REMARK 465 A B 65 REMARK 465 C B 66 REMARK 465 C B 67 REMARK 465 A B 68 REMARK 465 G D 1 REMARK 465 G D 2 REMARK 465 G D 3 REMARK 465 G D 4 REMARK 465 G D 5 REMARK 465 C D 6 REMARK 465 G D 7 REMARK 465 G D 8 REMARK 465 A D 9 REMARK 465 A D 10 REMARK 465 A D 11 REMARK 465 G D 12 REMARK 465 G D 13 REMARK 465 A D 14 REMARK 465 U D 15 REMARK 465 C D 40 REMARK 465 G D 41 REMARK 465 C D 42 REMARK 465 G D 43 REMARK 465 G D 44 REMARK 465 G D 45 REMARK 465 U D 46 REMARK 465 U D 47 REMARK 465 C D 48 REMARK 465 G D 49 REMARK 465 A D 50 REMARK 465 U D 51 REMARK 465 U D 52 REMARK 465 C D 53 REMARK 465 C D 54 REMARK 465 C D 55 REMARK 465 G D 56 REMARK 465 C D 57 REMARK 465 C D 58 REMARK 465 G D 59 REMARK 465 C D 60 REMARK 465 C D 61 REMARK 465 U D 62 REMARK 465 C D 63 REMARK 465 C D 64 REMARK 465 A D 65 REMARK 465 C D 66 REMARK 465 C D 67 REMARK 465 A D 68 REMARK 465 GLY A 1 REMARK 465 LYS A 2 REMARK 465 THR A 73 REMARK 465 ILE A 74 REMARK 465 GLU A 75 REMARK 465 TYR A 131 REMARK 465 ASP A 132 REMARK 465 ARG A 133 REMARK 465 ARG A 134 REMARK 465 ARG A 135 REMARK 465 GLU A 136 REMARK 465 LEU A 137 REMARK 465 LYS A 138 REMARK 465 GLU A 139 REMARK 465 LYS A 140 REMARK 465 ALA A 141 REMARK 465 MET A 142 REMARK 465 LYS A 143 REMARK 465 ARG A 144 REMARK 465 GLU A 145 REMARK 465 LEU A 146 REMARK 465 GLU A 147 REMARK 465 ARG A 148 REMARK 465 GLU A 149 REMARK 465 PHE A 150 REMARK 465 LYS A 151 REMARK 465 GLY A 152 REMARK 465 LYS A 153 REMARK 465 ILE A 154 REMARK 465 HIS A 155 REMARK 465 LEU A 156 REMARK 465 GLY C 1 REMARK 465 LYS C 2 REMARK 465 THR C 73 REMARK 465 ILE C 74 REMARK 465 GLU C 75 REMARK 465 TYR C 131 REMARK 465 ASP C 132 REMARK 465 ARG C 133 REMARK 465 ARG C 134 REMARK 465 ARG C 135 REMARK 465 GLU C 136 REMARK 465 LEU C 137 REMARK 465 LYS C 138 REMARK 465 GLU C 139 REMARK 465 LYS C 140 REMARK 465 ALA C 141 REMARK 465 MET C 142 REMARK 465 LYS C 143 REMARK 465 ARG C 144 REMARK 465 GLU C 145 REMARK 465 LEU C 146 REMARK 465 GLU C 147 REMARK 465 ARG C 148 REMARK 465 GLU C 149 REMARK 465 PHE C 150 REMARK 465 LYS C 151 REMARK 465 GLY C 152 REMARK 465 LYS C 153 REMARK 465 ILE C 154 REMARK 465 HIS C 155 REMARK 465 LEU C 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 G B 13 P OP1 OP2 REMARK 470 U D 16 P OP1 OP2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 U B 16 N1 - C1' - C2' ANGL. DEV. = 8.5 DEGREES REMARK 500 G B 18 C2' - C3' - O3' ANGL. DEV. = 9.8 DEGREES REMARK 500 C B 40 N1 - C1' - C2' ANGL. DEV. = 8.6 DEGREES REMARK 500 TYR A 62 N - CA - C ANGL. DEV. = 17.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 9 -50.49 -122.72 REMARK 500 GLU A 14 47.58 -64.97 REMARK 500 ALA A 15 -10.22 -165.91 REMARK 500 ASP A 20 100.07 58.42 REMARK 500 ALA A 27 -136.79 -5.03 REMARK 500 SER A 34 -51.65 -29.84 REMARK 500 GLU A 41 0.98 -61.31 REMARK 500 LYS A 42 -65.61 101.75 REMARK 500 GLU A 55 -129.80 -89.80 REMARK 500 ASN A 56 89.45 -61.40 REMARK 500 LYS A 70 77.55 -55.92 REMARK 500 HIS A 77 72.13 68.66 REMARK 500 PRO A 79 -11.55 -49.55 REMARK 500 ARG A 81 134.47 14.96 REMARK 500 LEU A 87 12.34 -146.00 REMARK 500 HIS A 88 115.73 78.00 REMARK 500 GLN A 100 -100.89 -66.43 REMARK 500 GLU A 101 -55.70 -1.21 REMARK 500 TYR A 104 179.47 -52.74 REMARK 500 ASN A 116 28.83 44.95 REMARK 500 LYS A 126 -167.41 -111.91 REMARK 500 LYS A 129 -45.00 77.48 REMARK 500 ILE C 9 -66.47 -152.59 REMARK 500 ALA C 10 -134.06 -80.51 REMARK 500 GLU C 11 120.62 105.19 REMARK 500 ILE C 21 142.74 -34.75 REMARK 500 ALA C 27 -77.48 -64.68 REMARK 500 LYS C 42 -41.74 133.77 REMARK 500 VAL C 45 73.34 -151.65 REMARK 500 GLU C 55 -132.57 -108.57 REMARK 500 ASN C 63 61.90 69.71 REMARK 500 LYS C 70 82.09 -49.82 REMARK 500 HIS C 77 103.45 76.76 REMARK 500 PRO C 79 -40.38 -16.94 REMARK 500 ARG C 81 155.54 -40.14 REMARK 500 GLN C 100 -79.19 -76.84 REMARK 500 GLU C 101 -70.91 -31.03 REMARK 500 TYR C 104 -142.58 -82.85 REMARK 500 LYS C 114 86.26 -156.69 REMARK 500 ASN C 115 60.28 66.82 REMARK 500 LYS C 126 -159.92 -115.55 REMARK 500 LYS C 129 -94.58 -54.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 U B 16 0.10 SIDE CHAIN REMARK 500 U B 28 0.07 SIDE CHAIN REMARK 500 C B 40 0.10 SIDE CHAIN REMARK 500 U D 28 0.07 SIDE CHAIN REMARK 500 U D 32 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1P6V A 1 156 UNP O66640 SSRP_AQUAE 2 157 DBREF 1P6V C 1 156 UNP O66640 SSRP_AQUAE 2 157 DBREF 1P6V B 1 68 PDB 1P6V 1P6V 1 68 DBREF 1P6V D 1 68 PDB 1P6V 1P6V 1 68 SEQRES 1 B 68 G G G G G C G G A A A G G SEQRES 2 B 68 A U U C G A C G G G G A C SEQRES 3 B 68 U U C G G U C C U C G G A SEQRES 4 B 68 C G C G G G U U C G A U U SEQRES 5 B 68 C C C G C C G C C U C C A SEQRES 6 B 68 C C A SEQRES 1 D 68 G G G G G C G G A A A G G SEQRES 2 D 68 A U U C G A C G G G G A C SEQRES 3 D 68 U U C G G U C C U C G G A SEQRES 4 D 68 C G C G G G U U C G A U U SEQRES 5 D 68 C C C G C C G C C U C C A SEQRES 6 D 68 C C A SEQRES 1 A 156 GLY LYS SER ASP LYS ILE ILE PRO ILE ALA GLU ASN LYS SEQRES 2 A 156 GLU ALA LYS ALA LYS TYR ASP ILE LEU GLU THR TYR GLU SEQRES 3 A 156 ALA GLY ILE VAL LEU LYS GLY SER GLU VAL LYS SER LEU SEQRES 4 A 156 ARG GLU LYS GLY THR VAL SER PHE LYS ASP SER PHE VAL SEQRES 5 A 156 ARG ILE GLU ASN GLY GLU ALA TRP LEU TYR ASN LEU TYR SEQRES 6 A 156 ILE ALA PRO TYR LYS HIS ALA THR ILE GLU ASN HIS ASP SEQRES 7 A 156 PRO LEU ARG LYS ARG LYS LEU LEU LEU HIS LYS ARG GLU SEQRES 8 A 156 ILE MET ARG LEU TYR GLY LYS VAL GLN GLU LYS GLY TYR SEQRES 9 A 156 THR ILE ILE PRO LEU LYS LEU TYR TRP LYS ASN ASN LYS SEQRES 10 A 156 VAL LYS VAL LEU ILE ALA LEU ALA LYS GLY LYS LYS LEU SEQRES 11 A 156 TYR ASP ARG ARG ARG GLU LEU LYS GLU LYS ALA MET LYS SEQRES 12 A 156 ARG GLU LEU GLU ARG GLU PHE LYS GLY LYS ILE HIS LEU SEQRES 1 C 156 GLY LYS SER ASP LYS ILE ILE PRO ILE ALA GLU ASN LYS SEQRES 2 C 156 GLU ALA LYS ALA LYS TYR ASP ILE LEU GLU THR TYR GLU SEQRES 3 C 156 ALA GLY ILE VAL LEU LYS GLY SER GLU VAL LYS SER LEU SEQRES 4 C 156 ARG GLU LYS GLY THR VAL SER PHE LYS ASP SER PHE VAL SEQRES 5 C 156 ARG ILE GLU ASN GLY GLU ALA TRP LEU TYR ASN LEU TYR SEQRES 6 C 156 ILE ALA PRO TYR LYS HIS ALA THR ILE GLU ASN HIS ASP SEQRES 7 C 156 PRO LEU ARG LYS ARG LYS LEU LEU LEU HIS LYS ARG GLU SEQRES 8 C 156 ILE MET ARG LEU TYR GLY LYS VAL GLN GLU LYS GLY TYR SEQRES 9 C 156 THR ILE ILE PRO LEU LYS LEU TYR TRP LYS ASN ASN LYS SEQRES 10 C 156 VAL LYS VAL LEU ILE ALA LEU ALA LYS GLY LYS LYS LEU SEQRES 11 C 156 TYR ASP ARG ARG ARG GLU LEU LYS GLU LYS ALA MET LYS SEQRES 12 C 156 ARG GLU LEU GLU ARG GLU PHE LYS GLY LYS ILE HIS LEU HELIX 1 1 LYS A 32 GLU A 41 1 10 HELIX 2 2 HIS A 88 GLY A 103 1 16 HELIX 3 3 ASN C 12 ALA C 17 1 6 HELIX 4 4 LYS C 32 LYS C 42 1 11 HELIX 5 5 HIS C 88 LYS C 102 1 15 SHEET 1 A 4 ILE A 6 GLU A 11 0 SHEET 2 A 4 THR A 105 LYS A 114 -1 O TRP A 113 N ILE A 7 SHEET 3 A 4 VAL A 118 ALA A 125 -1 O ALA A 125 N THR A 105 SHEET 4 A 4 ILE A 21 GLU A 26 -1 N TYR A 25 O ILE A 122 SHEET 1 B 2 VAL A 45 SER A 46 0 SHEET 2 B 2 TYR A 65 ILE A 66 -1 O TYR A 65 N SER A 46 SHEET 1 C 3 VAL A 52 ARG A 53 0 SHEET 2 C 3 TRP A 60 LEU A 61 -1 O TRP A 60 N ARG A 53 SHEET 3 C 3 ARG A 83 LYS A 84 -1 O ARG A 83 N LEU A 61 SHEET 1 D 4 ILE C 6 PRO C 8 0 SHEET 2 D 4 PRO C 108 LYS C 114 -1 O TRP C 113 N ILE C 7 SHEET 3 D 4 VAL C 118 ALA C 123 -1 O LYS C 119 N TYR C 112 SHEET 4 D 4 THR C 24 GLU C 26 -1 N TYR C 25 O ILE C 122 SHEET 1 E 2 TYR C 19 ASP C 20 0 SHEET 2 E 2 LYS C 126 GLY C 127 -1 O LYS C 126 N ASP C 20 SHEET 1 F 3 PHE C 51 ILE C 54 0 SHEET 2 F 3 ALA C 59 TYR C 62 -1 O TRP C 60 N ARG C 53 SHEET 3 F 3 ARG C 83 LYS C 84 -1 O ARG C 83 N LEU C 61 CRYST1 99.680 99.680 207.050 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010032 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010032 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004830 0.00000