data_1P8L # _entry.id 1P8L # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.398 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1P8L pdb_00001p8l 10.2210/pdb1p8l/pdb RCSB RCSB019143 ? ? WWPDB D_1000019143 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-08-26 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-16 5 'Structure model' 1 4 2024-11-06 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' Advisory 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Data collection' 5 4 'Structure model' 'Database references' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Refinement description' 8 5 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_initial_refinement_model 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_ref_seq_dif 7 4 'Structure model' struct_site 8 5 'Structure model' pdbx_entry_details 9 5 'Structure model' pdbx_modification_feature # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1P8L _pdbx_database_status.recvd_initial_deposition_date 2003-05-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Odell, M.' 1 'Malinina, L.' 2 'Teplova, M.' 3 'Shuman, S.' 4 # _citation.id primary _citation.title ;Analysis of the DNA Joining Repertoire of Chlorella Virus DNA ligase and a New Crystal Structure of the Ligase-Adenylate Intermediate ; _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 31 _citation.page_first 5090 _citation.page_last 5100 _citation.year 2003 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 12930960 _citation.pdbx_database_id_DOI 10.1093/nar/gkg665 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Odell, M.' 1 ? primary 'Malinina, L.' 2 ? primary 'Sriskanda, V.' 3 ? primary 'Teplova, M.' 4 ? primary 'Shuman, S.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'PBCV-1 DNA ligase' 35128.270 1 ? ? ? ? 2 non-polymer syn 'ADENOSINE MONOPHOSPHATE' 347.221 1 ? ? ? ? 3 water nat water 18.015 2 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;HHHHHHMAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGAT FQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERD VLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMG SIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR ; _entity_poly.pdbx_seq_one_letter_code_can ;HHHHHHMAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGAT FQDTTSAVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERD VLSKGFEGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMG SIEVDYDGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'ADENOSINE MONOPHOSPHATE' AMP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 MET n 1 8 ALA n 1 9 ILE n 1 10 THR n 1 11 LYS n 1 12 PRO n 1 13 LEU n 1 14 LEU n 1 15 ALA n 1 16 ALA n 1 17 THR n 1 18 LEU n 1 19 GLU n 1 20 ASN n 1 21 ILE n 1 22 GLU n 1 23 ASP n 1 24 VAL n 1 25 GLN n 1 26 PHE n 1 27 PRO n 1 28 CYS n 1 29 LEU n 1 30 ALA n 1 31 THR n 1 32 PRO n 1 33 LYS n 1 34 ILE n 1 35 ASP n 1 36 GLY n 1 37 ILE n 1 38 ARG n 1 39 SER n 1 40 VAL n 1 41 LYS n 1 42 GLN n 1 43 THR n 1 44 GLN n 1 45 MET n 1 46 LEU n 1 47 SER n 1 48 ARG n 1 49 THR n 1 50 PHE n 1 51 LYS n 1 52 PRO n 1 53 ILE n 1 54 ARG n 1 55 ASN n 1 56 SER n 1 57 VAL n 1 58 MET n 1 59 ASN n 1 60 ARG n 1 61 LEU n 1 62 LEU n 1 63 THR n 1 64 GLU n 1 65 LEU n 1 66 LEU n 1 67 PRO n 1 68 GLU n 1 69 GLY n 1 70 SER n 1 71 ASP n 1 72 GLY n 1 73 GLU n 1 74 ILE n 1 75 SER n 1 76 ILE n 1 77 GLU n 1 78 GLY n 1 79 ALA n 1 80 THR n 1 81 PHE n 1 82 GLN n 1 83 ASP n 1 84 THR n 1 85 THR n 1 86 SER n 1 87 ALA n 1 88 VAL n 1 89 MET n 1 90 THR n 1 91 GLY n 1 92 HIS n 1 93 LYS n 1 94 MET n 1 95 TYR n 1 96 ASN n 1 97 ALA n 1 98 LYS n 1 99 PHE n 1 100 SER n 1 101 TYR n 1 102 TYR n 1 103 TRP n 1 104 PHE n 1 105 ASP n 1 106 TYR n 1 107 VAL n 1 108 THR n 1 109 ASP n 1 110 ASP n 1 111 PRO n 1 112 LEU n 1 113 LYS n 1 114 LYS n 1 115 TYR n 1 116 ILE n 1 117 ASP n 1 118 ARG n 1 119 VAL n 1 120 GLU n 1 121 ASP n 1 122 MET n 1 123 LYS n 1 124 ASN n 1 125 TYR n 1 126 ILE n 1 127 THR n 1 128 VAL n 1 129 HIS n 1 130 PRO n 1 131 HIS n 1 132 ILE n 1 133 LEU n 1 134 GLU n 1 135 HIS n 1 136 ALA n 1 137 GLN n 1 138 VAL n 1 139 LYS n 1 140 ILE n 1 141 ILE n 1 142 PRO n 1 143 LEU n 1 144 ILE n 1 145 PRO n 1 146 VAL n 1 147 GLU n 1 148 ILE n 1 149 ASN n 1 150 ASN n 1 151 ILE n 1 152 THR n 1 153 GLU n 1 154 LEU n 1 155 LEU n 1 156 GLN n 1 157 TYR n 1 158 GLU n 1 159 ARG n 1 160 ASP n 1 161 VAL n 1 162 LEU n 1 163 SER n 1 164 LYS n 1 165 GLY n 1 166 PHE n 1 167 GLU n 1 168 GLY n 1 169 VAL n 1 170 MET n 1 171 ILE n 1 172 ARG n 1 173 LYS n 1 174 PRO n 1 175 ASP n 1 176 GLY n 1 177 LYS n 1 178 TYR n 1 179 LYS n 1 180 PHE n 1 181 GLY n 1 182 ARG n 1 183 SER n 1 184 THR n 1 185 LEU n 1 186 LYS n 1 187 GLU n 1 188 GLY n 1 189 ILE n 1 190 LEU n 1 191 LEU n 1 192 LYS n 1 193 MET n 1 194 LYS n 1 195 GLN n 1 196 PHE n 1 197 LYS n 1 198 ASP n 1 199 ALA n 1 200 GLU n 1 201 ALA n 1 202 THR n 1 203 ILE n 1 204 ILE n 1 205 SER n 1 206 MET n 1 207 THR n 1 208 ALA n 1 209 LEU n 1 210 PHE n 1 211 LYS n 1 212 ASN n 1 213 THR n 1 214 ASN n 1 215 THR n 1 216 LYS n 1 217 THR n 1 218 LYS n 1 219 ASP n 1 220 ASN n 1 221 PHE n 1 222 GLY n 1 223 TYR n 1 224 SER n 1 225 LYS n 1 226 ARG n 1 227 SER n 1 228 THR n 1 229 HIS n 1 230 LYS n 1 231 SER n 1 232 GLY n 1 233 LYS n 1 234 VAL n 1 235 GLU n 1 236 GLU n 1 237 ASP n 1 238 VAL n 1 239 MET n 1 240 GLY n 1 241 SER n 1 242 ILE n 1 243 GLU n 1 244 VAL n 1 245 ASP n 1 246 TYR n 1 247 ASP n 1 248 GLY n 1 249 VAL n 1 250 VAL n 1 251 PHE n 1 252 SER n 1 253 ILE n 1 254 GLY n 1 255 THR n 1 256 GLY n 1 257 PHE n 1 258 ASP n 1 259 ALA n 1 260 ASP n 1 261 GLN n 1 262 ARG n 1 263 ARG n 1 264 ASP n 1 265 PHE n 1 266 TRP n 1 267 GLN n 1 268 ASN n 1 269 LYS n 1 270 GLU n 1 271 SER n 1 272 TYR n 1 273 ILE n 1 274 GLY n 1 275 LYS n 1 276 MET n 1 277 VAL n 1 278 LYS n 1 279 PHE n 1 280 LYS n 1 281 TYR n 1 282 PHE n 1 283 GLU n 1 284 MET n 1 285 GLY n 1 286 SER n 1 287 LYS n 1 288 ASP n 1 289 CYS n 1 290 PRO n 1 291 ARG n 1 292 PHE n 1 293 PRO n 1 294 VAL n 1 295 PHE n 1 296 ILE n 1 297 GLY n 1 298 ILE n 1 299 ARG n 1 300 HIS n 1 301 GLU n 1 302 GLU n 1 303 ASP n 1 304 ARG n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Chlorovirus _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Paramecium bursaria Chlorella virus 1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 10506 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AMP non-polymer . 'ADENOSINE MONOPHOSPHATE' ? 'C10 H14 N5 O7 P' 347.221 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 -5 ? ? ? A . n A 1 2 HIS 2 -4 ? ? ? A . n A 1 3 HIS 3 -3 ? ? ? A . n A 1 4 HIS 4 -2 ? ? ? A . n A 1 5 HIS 5 -1 ? ? ? A . n A 1 6 HIS 6 0 ? ? ? A . n A 1 7 MET 7 1 ? ? ? A . n A 1 8 ALA 8 2 2 ALA ALA A . n A 1 9 ILE 9 3 3 ILE ILE A . n A 1 10 THR 10 4 4 THR THR A . n A 1 11 LYS 11 5 5 LYS LYS A . n A 1 12 PRO 12 6 6 PRO PRO A . n A 1 13 LEU 13 7 7 LEU LEU A . n A 1 14 LEU 14 8 8 LEU LEU A . n A 1 15 ALA 15 9 9 ALA ALA A . n A 1 16 ALA 16 10 10 ALA ALA A . n A 1 17 THR 17 11 11 THR THR A . n A 1 18 LEU 18 12 12 LEU LEU A . n A 1 19 GLU 19 13 13 GLU GLU A . n A 1 20 ASN 20 14 14 ASN ASN A . n A 1 21 ILE 21 15 15 ILE ILE A . n A 1 22 GLU 22 16 16 GLU GLU A . n A 1 23 ASP 23 17 17 ASP ASP A . n A 1 24 VAL 24 18 18 VAL VAL A . n A 1 25 GLN 25 19 19 GLN GLN A . n A 1 26 PHE 26 20 20 PHE PHE A . n A 1 27 PRO 27 21 21 PRO PRO A . n A 1 28 CYS 28 22 22 CYS CYS A . n A 1 29 LEU 29 23 23 LEU LEU A . n A 1 30 ALA 30 24 24 ALA ALA A . n A 1 31 THR 31 25 25 THR THR A . n A 1 32 PRO 32 26 26 PRO PRO A . n A 1 33 LYS 33 27 27 LYS LYS A . n A 1 34 ILE 34 28 28 ILE ILE A . n A 1 35 ASP 35 29 29 ASP ASP A . n A 1 36 GLY 36 30 30 GLY GLY A . n A 1 37 ILE 37 31 31 ILE ILE A . n A 1 38 ARG 38 32 32 ARG ARG A . n A 1 39 SER 39 33 33 SER SER A . n A 1 40 VAL 40 34 34 VAL VAL A . n A 1 41 LYS 41 35 35 LYS LYS A . n A 1 42 GLN 42 36 36 GLN GLN A . n A 1 43 THR 43 37 37 THR THR A . n A 1 44 GLN 44 38 38 GLN GLN A . n A 1 45 MET 45 39 39 MET MET A . n A 1 46 LEU 46 40 40 LEU LEU A . n A 1 47 SER 47 41 41 SER SER A . n A 1 48 ARG 48 42 42 ARG ARG A . n A 1 49 THR 49 43 43 THR THR A . n A 1 50 PHE 50 44 44 PHE PHE A . n A 1 51 LYS 51 45 45 LYS LYS A . n A 1 52 PRO 52 46 46 PRO PRO A . n A 1 53 ILE 53 47 47 ILE ILE A . n A 1 54 ARG 54 48 48 ARG ARG A . n A 1 55 ASN 55 49 49 ASN ASN A . n A 1 56 SER 56 50 50 SER SER A . n A 1 57 VAL 57 51 51 VAL VAL A . n A 1 58 MET 58 52 52 MET MET A . n A 1 59 ASN 59 53 53 ASN ASN A . n A 1 60 ARG 60 54 54 ARG ARG A . n A 1 61 LEU 61 55 55 LEU LEU A . n A 1 62 LEU 62 56 56 LEU LEU A . n A 1 63 THR 63 57 57 THR THR A . n A 1 64 GLU 64 58 58 GLU GLU A . n A 1 65 LEU 65 59 59 LEU LEU A . n A 1 66 LEU 66 60 60 LEU LEU A . n A 1 67 PRO 67 61 61 PRO PRO A . n A 1 68 GLU 68 62 62 GLU GLU A . n A 1 69 GLY 69 63 63 GLY GLY A . n A 1 70 SER 70 64 64 SER SER A . n A 1 71 ASP 71 65 65 ASP ASP A . n A 1 72 GLY 72 66 66 GLY GLY A . n A 1 73 GLU 73 67 67 GLU GLU A . n A 1 74 ILE 74 68 68 ILE ILE A . n A 1 75 SER 75 69 69 SER SER A . n A 1 76 ILE 76 70 70 ILE ILE A . n A 1 77 GLU 77 71 71 GLU GLU A . n A 1 78 GLY 78 72 72 GLY GLY A . n A 1 79 ALA 79 73 73 ALA ALA A . n A 1 80 THR 80 74 74 THR THR A . n A 1 81 PHE 81 75 75 PHE PHE A . n A 1 82 GLN 82 76 76 GLN GLN A . n A 1 83 ASP 83 77 77 ASP ASP A . n A 1 84 THR 84 78 78 THR THR A . n A 1 85 THR 85 79 79 THR THR A . n A 1 86 SER 86 80 80 SER SER A . n A 1 87 ALA 87 81 81 ALA ALA A . n A 1 88 VAL 88 82 82 VAL VAL A . n A 1 89 MET 89 83 83 MET MET A . n A 1 90 THR 90 84 84 THR THR A . n A 1 91 GLY 91 85 85 GLY GLY A . n A 1 92 HIS 92 86 86 HIS HIS A . n A 1 93 LYS 93 87 87 LYS LYS A . n A 1 94 MET 94 88 88 MET MET A . n A 1 95 TYR 95 89 89 TYR TYR A . n A 1 96 ASN 96 90 90 ASN ASN A . n A 1 97 ALA 97 91 91 ALA ALA A . n A 1 98 LYS 98 92 92 LYS LYS A . n A 1 99 PHE 99 93 93 PHE PHE A . n A 1 100 SER 100 94 94 SER SER A . n A 1 101 TYR 101 95 95 TYR TYR A . n A 1 102 TYR 102 96 96 TYR TYR A . n A 1 103 TRP 103 97 97 TRP TRP A . n A 1 104 PHE 104 98 98 PHE PHE A . n A 1 105 ASP 105 99 99 ASP ASP A . n A 1 106 TYR 106 100 100 TYR TYR A . n A 1 107 VAL 107 101 101 VAL VAL A . n A 1 108 THR 108 102 102 THR THR A . n A 1 109 ASP 109 103 103 ASP ASP A . n A 1 110 ASP 110 104 104 ASP ASP A . n A 1 111 PRO 111 105 105 PRO PRO A . n A 1 112 LEU 112 106 106 LEU LEU A . n A 1 113 LYS 113 107 107 LYS LYS A . n A 1 114 LYS 114 108 108 LYS LYS A . n A 1 115 TYR 115 109 109 TYR TYR A . n A 1 116 ILE 116 110 110 ILE ILE A . n A 1 117 ASP 117 111 111 ASP ASP A . n A 1 118 ARG 118 112 112 ARG ARG A . n A 1 119 VAL 119 113 113 VAL VAL A . n A 1 120 GLU 120 114 114 GLU GLU A . n A 1 121 ASP 121 115 115 ASP ASP A . n A 1 122 MET 122 116 116 MET MET A . n A 1 123 LYS 123 117 117 LYS LYS A . n A 1 124 ASN 124 118 118 ASN ASN A . n A 1 125 TYR 125 119 119 TYR TYR A . n A 1 126 ILE 126 120 120 ILE ILE A . n A 1 127 THR 127 121 121 THR THR A . n A 1 128 VAL 128 122 122 VAL VAL A . n A 1 129 HIS 129 123 123 HIS HIS A . n A 1 130 PRO 130 124 124 PRO PRO A . n A 1 131 HIS 131 125 125 HIS HIS A . n A 1 132 ILE 132 126 126 ILE ILE A . n A 1 133 LEU 133 127 127 LEU LEU A . n A 1 134 GLU 134 128 128 GLU GLU A . n A 1 135 HIS 135 129 129 HIS HIS A . n A 1 136 ALA 136 130 130 ALA ALA A . n A 1 137 GLN 137 131 131 GLN GLN A . n A 1 138 VAL 138 132 132 VAL VAL A . n A 1 139 LYS 139 133 133 LYS LYS A . n A 1 140 ILE 140 134 134 ILE ILE A . n A 1 141 ILE 141 135 135 ILE ILE A . n A 1 142 PRO 142 136 136 PRO PRO A . n A 1 143 LEU 143 137 137 LEU LEU A . n A 1 144 ILE 144 138 138 ILE ILE A . n A 1 145 PRO 145 139 139 PRO PRO A . n A 1 146 VAL 146 140 140 VAL VAL A . n A 1 147 GLU 147 141 141 GLU GLU A . n A 1 148 ILE 148 142 142 ILE ILE A . n A 1 149 ASN 149 143 143 ASN ASN A . n A 1 150 ASN 150 144 144 ASN ASN A . n A 1 151 ILE 151 145 145 ILE ILE A . n A 1 152 THR 152 146 146 THR THR A . n A 1 153 GLU 153 147 147 GLU GLU A . n A 1 154 LEU 154 148 148 LEU LEU A . n A 1 155 LEU 155 149 149 LEU LEU A . n A 1 156 GLN 156 150 150 GLN GLN A . n A 1 157 TYR 157 151 151 TYR TYR A . n A 1 158 GLU 158 152 152 GLU GLU A . n A 1 159 ARG 159 153 153 ARG ARG A . n A 1 160 ASP 160 154 154 ASP ASP A . n A 1 161 VAL 161 155 155 VAL VAL A . n A 1 162 LEU 162 156 156 LEU LEU A . n A 1 163 SER 163 157 157 SER SER A . n A 1 164 LYS 164 158 158 LYS LYS A . n A 1 165 GLY 165 159 159 GLY GLY A . n A 1 166 PHE 166 160 160 PHE PHE A . n A 1 167 GLU 167 161 161 GLU GLU A . n A 1 168 GLY 168 162 162 GLY GLY A . n A 1 169 VAL 169 163 163 VAL VAL A . n A 1 170 MET 170 164 164 MET MET A . n A 1 171 ILE 171 165 165 ILE ILE A . n A 1 172 ARG 172 166 166 ARG ARG A . n A 1 173 LYS 173 167 167 LYS LYS A . n A 1 174 PRO 174 168 168 PRO PRO A . n A 1 175 ASP 175 169 169 ASP ASP A . n A 1 176 GLY 176 170 170 GLY GLY A . n A 1 177 LYS 177 171 171 LYS LYS A . n A 1 178 TYR 178 172 172 TYR TYR A . n A 1 179 LYS 179 173 173 LYS LYS A . n A 1 180 PHE 180 174 174 PHE PHE A . n A 1 181 GLY 181 175 175 GLY GLY A . n A 1 182 ARG 182 176 176 ARG ARG A . n A 1 183 SER 183 177 177 SER SER A . n A 1 184 THR 184 178 178 THR THR A . n A 1 185 LEU 185 179 179 LEU LEU A . n A 1 186 LYS 186 180 180 LYS LYS A . n A 1 187 GLU 187 181 181 GLU GLU A . n A 1 188 GLY 188 182 182 GLY GLY A . n A 1 189 ILE 189 183 183 ILE ILE A . n A 1 190 LEU 190 184 184 LEU LEU A . n A 1 191 LEU 191 185 185 LEU LEU A . n A 1 192 LYS 192 186 186 LYS LYS A . n A 1 193 MET 193 187 187 MET MET A . n A 1 194 LYS 194 188 188 LYS LYS A . n A 1 195 GLN 195 189 189 GLN GLN A . n A 1 196 PHE 196 190 190 PHE PHE A . n A 1 197 LYS 197 191 191 LYS LYS A . n A 1 198 ASP 198 192 192 ASP ASP A . n A 1 199 ALA 199 193 193 ALA ALA A . n A 1 200 GLU 200 194 194 GLU GLU A . n A 1 201 ALA 201 195 195 ALA ALA A . n A 1 202 THR 202 196 196 THR THR A . n A 1 203 ILE 203 197 197 ILE ILE A . n A 1 204 ILE 204 198 198 ILE ILE A . n A 1 205 SER 205 199 199 SER SER A . n A 1 206 MET 206 200 200 MET MET A . n A 1 207 THR 207 201 201 THR THR A . n A 1 208 ALA 208 202 202 ALA ALA A . n A 1 209 LEU 209 203 203 LEU LEU A . n A 1 210 PHE 210 204 204 PHE PHE A . n A 1 211 LYS 211 205 205 LYS LYS A . n A 1 212 ASN 212 206 206 ASN ASN A . n A 1 213 THR 213 207 ? ? ? A . n A 1 214 ASN 214 208 ? ? ? A . n A 1 215 THR 215 209 ? ? ? A . n A 1 216 LYS 216 210 ? ? ? A . n A 1 217 THR 217 211 ? ? ? A . n A 1 218 LYS 218 212 ? ? ? A . n A 1 219 ASP 219 213 ? ? ? A . n A 1 220 ASN 220 214 ? ? ? A . n A 1 221 PHE 221 215 215 PHE PHE A . n A 1 222 GLY 222 216 216 GLY GLY A . n A 1 223 TYR 223 217 217 TYR TYR A . n A 1 224 SER 224 218 ? ? ? A . n A 1 225 LYS 225 219 ? ? ? A . n A 1 226 ARG 226 220 ? ? ? A . n A 1 227 SER 227 221 ? ? ? A . n A 1 228 THR 228 222 ? ? ? A . n A 1 229 HIS 229 223 ? ? ? A . n A 1 230 LYS 230 224 ? ? ? A . n A 1 231 SER 231 225 ? ? ? A . n A 1 232 GLY 232 226 ? ? ? A . n A 1 233 LYS 233 227 ? ? ? A . n A 1 234 VAL 234 228 ? ? ? A . n A 1 235 GLU 235 229 ? ? ? A . n A 1 236 GLU 236 230 230 GLU GLU A . n A 1 237 ASP 237 231 231 ASP ASP A . n A 1 238 VAL 238 232 232 VAL VAL A . n A 1 239 MET 239 233 233 MET MET A . n A 1 240 GLY 240 234 234 GLY GLY A . n A 1 241 SER 241 235 235 SER SER A . n A 1 242 ILE 242 236 236 ILE ILE A . n A 1 243 GLU 243 237 237 GLU GLU A . n A 1 244 VAL 244 238 238 VAL VAL A . n A 1 245 ASP 245 239 239 ASP ASP A . n A 1 246 TYR 246 240 240 TYR TYR A . n A 1 247 ASP 247 241 241 ASP ASP A . n A 1 248 GLY 248 242 242 GLY GLY A . n A 1 249 VAL 249 243 243 VAL VAL A . n A 1 250 VAL 250 244 244 VAL VAL A . n A 1 251 PHE 251 245 245 PHE PHE A . n A 1 252 SER 252 246 246 SER SER A . n A 1 253 ILE 253 247 247 ILE ILE A . n A 1 254 GLY 254 248 248 GLY GLY A . n A 1 255 THR 255 249 249 THR THR A . n A 1 256 GLY 256 250 250 GLY GLY A . n A 1 257 PHE 257 251 251 PHE PHE A . n A 1 258 ASP 258 252 252 ASP ASP A . n A 1 259 ALA 259 253 253 ALA ALA A . n A 1 260 ASP 260 254 254 ASP ASP A . n A 1 261 GLN 261 255 255 GLN GLN A . n A 1 262 ARG 262 256 256 ARG ARG A . n A 1 263 ARG 263 257 257 ARG ARG A . n A 1 264 ASP 264 258 258 ASP ASP A . n A 1 265 PHE 265 259 259 PHE PHE A . n A 1 266 TRP 266 260 260 TRP TRP A . n A 1 267 GLN 267 261 261 GLN GLN A . n A 1 268 ASN 268 262 262 ASN ASN A . n A 1 269 LYS 269 263 263 LYS LYS A . n A 1 270 GLU 270 264 264 GLU GLU A . n A 1 271 SER 271 265 265 SER SER A . n A 1 272 TYR 272 266 266 TYR TYR A . n A 1 273 ILE 273 267 267 ILE ILE A . n A 1 274 GLY 274 268 268 GLY GLY A . n A 1 275 LYS 275 269 269 LYS LYS A . n A 1 276 MET 276 270 270 MET MET A . n A 1 277 VAL 277 271 271 VAL VAL A . n A 1 278 LYS 278 272 272 LYS LYS A . n A 1 279 PHE 279 273 273 PHE PHE A . n A 1 280 LYS 280 274 274 LYS LYS A . n A 1 281 TYR 281 275 275 TYR TYR A . n A 1 282 PHE 282 276 276 PHE PHE A . n A 1 283 GLU 283 277 277 GLU GLU A . n A 1 284 MET 284 278 278 MET MET A . n A 1 285 GLY 285 279 279 GLY GLY A . n A 1 286 SER 286 280 280 SER SER A . n A 1 287 LYS 287 281 281 LYS LYS A . n A 1 288 ASP 288 282 282 ASP ASP A . n A 1 289 CYS 289 283 283 CYS CYS A . n A 1 290 PRO 290 284 284 PRO PRO A . n A 1 291 ARG 291 285 285 ARG ARG A . n A 1 292 PHE 292 286 286 PHE PHE A . n A 1 293 PRO 293 287 287 PRO PRO A . n A 1 294 VAL 294 288 288 VAL VAL A . n A 1 295 PHE 295 289 289 PHE PHE A . n A 1 296 ILE 296 290 290 ILE ILE A . n A 1 297 GLY 297 291 291 GLY GLY A . n A 1 298 ILE 298 292 292 ILE ILE A . n A 1 299 ARG 299 293 293 ARG ARG A . n A 1 300 HIS 300 294 294 HIS HIS A . n A 1 301 GLU 301 295 295 GLU GLU A . n A 1 302 GLU 302 296 296 GLU GLU A . n A 1 303 ASP 303 297 297 ASP ASP A . n A 1 304 ARG 304 298 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AMP 1 301 301 AMP AMP A . C 3 HOH 1 311 311 HOH HOH A . C 3 HOH 2 325 325 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A LYS 87 ? CG ? A LYS 93 CG 2 1 Y 1 A LYS 87 ? CD ? A LYS 93 CD 3 1 Y 1 A LYS 87 ? CE ? A LYS 93 CE 4 1 Y 1 A LYS 87 ? NZ ? A LYS 93 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.1.06 ? 1 CrystalClear 'data reduction' '(MSC/RIGAKU)' ? 2 SCALEPACK 'data scaling' . ? 3 AMoRE phasing . ? 4 # _cell.entry_id 1P8L _cell.length_a 91.059 _cell.length_b 60.574 _cell.length_c 70.268 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1P8L _symmetry.space_group_name_H-M 'P 21 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 # _exptl.entry_id 1P8L _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.76 _exptl_crystal.density_percent_sol 55.39 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'hanging drops' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details '4-6% PEG 4000, 50 mM HEPES, 50 mM sodium acetate, pH 7.5, hanging drops, temperature 277K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2002-01-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU RUH3R' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.5418 # _reflns.entry_id 1P8L _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 2.95 _reflns.d_resolution_low 15 _reflns.number_all 8265 _reflns.number_obs 8265 _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 26.2 _reflns.pdbx_redundancy 3.5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1P8L _refine.ls_number_reflns_obs 7585 _refine.ls_number_reflns_all 8265 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 2.95 _refine.ls_percent_reflns_obs 96.86 _refine.ls_R_factor_obs 0.26641 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.26299 _refine.ls_R_factor_R_free 0.30351 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.2 _refine.ls_number_reflns_R_free 680 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.911 _refine.correlation_coeff_Fo_to_Fc_free 0.876 _refine.B_iso_mean 26.237 _refine.aniso_B[1][1] 4.92 _refine.aniso_B[2][2] 0.37 _refine.aniso_B[3][3] -5.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 'PDB ENTRY 1FVI' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.507 _refine.overall_SU_ML 0.560 _refine.overall_SU_B 35.010 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag 'LIKELY RESIDUAL' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2228 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 2 _refine_hist.number_atoms_total 2252 _refine_hist.d_res_high 2.95 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.013 0.022 ? 2300 'X-RAY DIFFRACTION' ? r_angle_refined_deg 1.575 1.971 ? 3099 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.828 5.000 ? 273 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 38.004 24.340 ? 106 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 23.032 15.000 ? 420 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14.840 15.000 ? 12 'X-RAY DIFFRACTION' ? r_chiral_restr 0.128 0.200 ? 339 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.005 0.020 ? 1708 'X-RAY DIFFRACTION' ? r_nbd_refined 0.251 0.200 ? 1044 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.213 0.200 ? 77 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.289 0.200 ? 35 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.202 0.200 ? 3 'X-RAY DIFFRACTION' ? r_mcbond_it 0.414 1.500 ? 1371 'X-RAY DIFFRACTION' ? r_mcangle_it 0.777 2.000 ? 2226 'X-RAY DIFFRACTION' ? r_scbond_it 1.153 3.000 ? 929 'X-RAY DIFFRACTION' ? r_scangle_it 1.924 4.500 ? 873 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 2.950 _refine_ls_shell.d_res_low 3.024 _refine_ls_shell.number_reflns_R_work 529 _refine_ls_shell.R_factor_R_work 0.405 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free 0.406 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 55 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _database_PDB_matrix.entry_id 1P8L _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1P8L _struct.title 'New Crystal Structure of Chlorella Virus DNA Ligase-Adenylate' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1P8L _struct_keywords.pdbx_keywords LIGASE _struct_keywords.text ligase # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code O41026_CHVP1 _struct_ref.pdbx_db_accession O41026 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MAITKPLLAATLENIEDVQFPCLATPKIDGIRSVKQTQMLSRTFKPIRNSVMNRLLTELLPEGSDGEISIEGATFQDTTS AVMTGHKMYNAKFSYYWFDYVTDDPLKKYIDRVEDMKNYITVHPHILEHAQVKIIPLIPVEINNITELLQYERDVLSKGF EGVMIRKPDGKYKFGRSTLKEGILLKMKQFKDAEATIISMTALFKNTNTKTKDNFGYSKRSTHKSGKVEEDVMGSIEVDY DGVVFSIGTGFDADQRRDFWQNKESYIGKMVKFKYFEMGSKDCPRFPVFIGIRHEEDR ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1P8L _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 7 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 304 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O41026 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 298 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 298 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1P8L HIS A 1 ? UNP O41026 ? ? 'expression tag' -5 1 1 1P8L HIS A 2 ? UNP O41026 ? ? 'expression tag' -4 2 1 1P8L HIS A 3 ? UNP O41026 ? ? 'expression tag' -3 3 1 1P8L HIS A 4 ? UNP O41026 ? ? 'expression tag' -2 4 1 1P8L HIS A 5 ? UNP O41026 ? ? 'expression tag' -1 5 1 1P8L HIS A 6 ? UNP O41026 ? ? 'expression tag' 0 6 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 55 ? LEU A 66 ? ASN A 49 LEU A 60 1 ? 12 HELX_P HELX_P2 2 GLN A 82 ? MET A 89 ? GLN A 76 MET A 83 1 ? 8 HELX_P HELX_P3 3 LYS A 114 ? HIS A 129 ? LYS A 108 HIS A 123 1 ? 16 HELX_P HELX_P4 4 PRO A 130 ? GLU A 134 ? PRO A 124 GLU A 128 5 ? 5 HELX_P HELX_P5 5 ASN A 150 ? LYS A 164 ? ASN A 144 LYS A 158 1 ? 15 HELX_P HELX_P6 6 GLN A 261 ? TRP A 266 ? GLN A 255 TRP A 260 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_conn.id covale1 _struct_conn.conn_type_id covale _struct_conn.pdbx_leaving_atom_flag one _struct_conn.pdbx_PDB_id ? _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 33 _struct_conn.ptnr1_label_atom_id NZ _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_comp_id AMP _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_label_atom_id P _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 27 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id AMP _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.details ? _struct_conn.pdbx_dist_value 1.670 _struct_conn.pdbx_value_order ? _struct_conn.pdbx_role ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_modification_feature.ordinal 1 _pdbx_modification_feature.label_comp_id AMP _pdbx_modification_feature.label_asym_id B _pdbx_modification_feature.label_seq_id . _pdbx_modification_feature.label_alt_id ? _pdbx_modification_feature.modified_residue_label_comp_id LYS _pdbx_modification_feature.modified_residue_label_asym_id A _pdbx_modification_feature.modified_residue_label_seq_id 33 _pdbx_modification_feature.modified_residue_label_alt_id ? _pdbx_modification_feature.auth_comp_id AMP _pdbx_modification_feature.auth_asym_id A _pdbx_modification_feature.auth_seq_id 301 _pdbx_modification_feature.PDB_ins_code ? _pdbx_modification_feature.symmetry 1_555 _pdbx_modification_feature.modified_residue_auth_comp_id LYS _pdbx_modification_feature.modified_residue_auth_asym_id A _pdbx_modification_feature.modified_residue_auth_seq_id 27 _pdbx_modification_feature.modified_residue_PDB_ins_code ? _pdbx_modification_feature.modified_residue_symmetry 1_555 _pdbx_modification_feature.comp_id_linking_atom P _pdbx_modification_feature.modified_residue_id_linking_atom NZ _pdbx_modification_feature.modified_residue_id LYS _pdbx_modification_feature.ref_pcm_id 13 _pdbx_modification_feature.ref_comp_id AMP _pdbx_modification_feature.type AMPylation _pdbx_modification_feature.category 'Nucleotide monophosphate' # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 16 ? THR A 17 ? ALA A 10 THR A 11 A 2 LEU A 191 ? MET A 193 ? LEU A 185 MET A 187 A 3 VAL A 169 ? ARG A 172 ? VAL A 163 ARG A 166 A 4 LEU A 29 ? PRO A 32 ? LEU A 23 PRO A 26 A 5 VAL A 146 ? GLU A 147 ? VAL A 140 GLU A 141 B 1 MET A 45 ? LEU A 46 ? MET A 39 LEU A 40 B 2 ILE A 37 ? LYS A 41 ? ILE A 31 LYS A 35 B 3 SER A 70 ? SER A 75 ? SER A 64 SER A 69 B 4 PHE A 99 ? TYR A 106 ? PHE A 93 TYR A 100 B 5 VAL A 138 ? PRO A 142 ? VAL A 132 PRO A 136 C 1 PHE A 251 ? ILE A 253 ? PHE A 245 ILE A 247 C 2 MET A 239 ? VAL A 244 ? MET A 233 VAL A 238 C 3 LYS A 197 ? ALA A 208 ? LYS A 191 ALA A 202 C 4 MET A 276 ? PHE A 282 ? MET A 270 PHE A 276 C 5 ARG A 291 ? ILE A 298 ? ARG A 285 ILE A 292 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ALA A 16 ? N ALA A 10 O LYS A 192 ? O LYS A 186 A 2 3 O LEU A 191 ? O LEU A 185 N ILE A 171 ? N ILE A 165 A 3 4 O ARG A 172 ? O ARG A 166 N LEU A 29 ? N LEU A 23 A 4 5 N ALA A 30 ? N ALA A 24 O VAL A 146 ? O VAL A 140 B 1 2 O LEU A 46 ? O LEU A 40 N VAL A 40 ? N VAL A 34 B 2 3 N ILE A 37 ? N ILE A 31 O ILE A 74 ? O ILE A 68 B 3 4 N SER A 75 ? N SER A 69 O SER A 100 ? O SER A 94 B 4 5 N TYR A 101 ? N TYR A 95 O LYS A 139 ? O LYS A 133 C 1 2 O PHE A 251 ? O PHE A 245 N VAL A 244 ? N VAL A 238 C 2 3 O GLY A 240 ? O GLY A 234 N THR A 207 ? N THR A 201 C 3 4 N ALA A 199 ? N ALA A 193 O PHE A 279 ? O PHE A 273 C 4 5 N LYS A 278 ? N LYS A 272 O ILE A 296 ? O ILE A 290 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id AMP _struct_site.pdbx_auth_seq_id 301 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 11 _struct_site.details 'BINDING SITE FOR RESIDUE AMP A 301' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 11 THR A 31 ? THR A 25 . ? 1_555 ? 2 AC1 11 PRO A 32 ? PRO A 26 . ? 1_555 ? 3 AC1 11 LYS A 33 ? LYS A 27 . ? 1_555 ? 4 AC1 11 ILE A 34 ? ILE A 28 . ? 1_555 ? 5 AC1 11 ASP A 35 ? ASP A 29 . ? 1_555 ? 6 AC1 11 ARG A 38 ? ARG A 32 . ? 1_555 ? 7 AC1 11 GLU A 73 ? GLU A 67 . ? 1_555 ? 8 AC1 11 PHE A 104 ? PHE A 98 . ? 1_555 ? 9 AC1 11 MET A 170 ? MET A 164 . ? 1_555 ? 10 AC1 11 LEU A 190 ? LEU A 184 . ? 1_555 ? 11 AC1 11 LYS A 192 ? LYS A 186 . ? 1_555 ? # _pdbx_entry_details.entry_id 1P8L _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification Y # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 65 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 OH _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 TYR _pdbx_validate_close_contact.auth_seq_id_2 172 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.15 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 17 ? ? CG A ASP 17 ? ? OD2 A ASP 17 ? ? 123.82 118.30 5.52 0.90 N 2 1 CB A ASP 104 ? ? CG A ASP 104 ? ? OD2 A ASP 104 ? ? 124.50 118.30 6.20 0.90 N 3 1 CB A ASP 192 ? ? CG A ASP 192 ? ? OD2 A ASP 192 ? ? 124.99 118.30 6.69 0.90 N 4 1 CB A ASP 241 ? ? CG A ASP 241 ? ? OD2 A ASP 241 ? ? 123.85 118.30 5.55 0.90 N 5 1 CB A ASP 282 ? ? CG A ASP 282 ? ? OD2 A ASP 282 ? ? 123.87 118.30 5.57 0.90 N 6 1 CB A ASP 297 ? ? CG A ASP 297 ? ? OD2 A ASP 297 ? ? 124.07 118.30 5.77 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 16 ? ? -71.62 39.75 2 1 PHE A 20 ? ? -84.81 -143.43 3 1 PRO A 21 ? ? -13.12 57.18 4 1 ASP A 29 ? ? -105.81 69.32 5 1 THR A 37 ? ? 51.70 -79.57 6 1 GLN A 38 ? ? -100.74 -168.50 7 1 THR A 57 ? ? -37.84 -29.59 8 1 LEU A 59 ? ? -100.12 -65.79 9 1 ASN A 90 ? ? -153.04 3.74 10 1 THR A 102 ? ? 69.85 -67.76 11 1 ASP A 103 ? ? -158.97 -94.90 12 1 ILE A 126 ? ? -26.08 -38.69 13 1 ILE A 183 ? ? -71.93 -71.41 14 1 ILE A 198 ? ? -151.13 -29.40 15 1 LEU A 203 ? ? -53.15 -78.22 16 1 PHE A 204 ? ? 158.65 94.55 17 1 ASP A 239 ? ? -74.14 -89.45 18 1 TYR A 240 ? ? 58.03 101.92 19 1 ASP A 241 ? ? 13.11 92.23 20 1 ALA A 253 ? ? -59.93 -9.95 21 1 MET A 278 ? ? -88.70 -125.69 22 1 SER A 280 ? ? -64.44 65.74 23 1 CYS A 283 ? ? -178.23 97.90 24 1 PHE A 286 ? ? 16.20 93.14 # _pdbx_validate_peptide_omega.id 1 _pdbx_validate_peptide_omega.PDB_model_num 1 _pdbx_validate_peptide_omega.auth_comp_id_1 PHE _pdbx_validate_peptide_omega.auth_asym_id_1 A _pdbx_validate_peptide_omega.auth_seq_id_1 20 _pdbx_validate_peptide_omega.PDB_ins_code_1 ? _pdbx_validate_peptide_omega.label_alt_id_1 ? _pdbx_validate_peptide_omega.auth_comp_id_2 PRO _pdbx_validate_peptide_omega.auth_asym_id_2 A _pdbx_validate_peptide_omega.auth_seq_id_2 21 _pdbx_validate_peptide_omega.PDB_ins_code_2 ? _pdbx_validate_peptide_omega.label_alt_id_2 ? _pdbx_validate_peptide_omega.omega -132.08 # loop_ _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.pdbx_refine_id 1 ? refined 24.4950 24.2870 16.8470 0.2637 0.7539 1.2859 0.3207 -0.1545 -0.2123 6.0108 6.4808 5.4027 -1.5044 0.7806 -2.3871 -0.8240 -1.1999 0.5272 -0.1165 0.6578 0.3541 -0.1738 -0.0729 0.1662 'X-RAY DIFFRACTION' 2 ? refined 51.0980 8.5120 21.6960 0.3075 0.9925 1.2510 0.4999 -0.2999 -0.2886 14.3359 12.4733 2.1521 -0.0653 1.5716 2.8119 -1.4240 -2.5066 1.3985 0.2895 1.3903 -1.1622 -0.4620 0.2360 0.0337 'X-RAY DIFFRACTION' # loop_ _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.selection_details 1 1 A 8 2 A 194 188 ? A A 'X-RAY DIFFRACTION' ? 2 1 B 1 301 B 1 301 ? A A 'X-RAY DIFFRACTION' ? 3 1 A 221 215 A 223 217 ? A A 'X-RAY DIFFRACTION' ? 4 1 C 1 311 C 2 325 ? A A 'X-RAY DIFFRACTION' ? 5 2 A 195 189 A 212 206 ? A A 'X-RAY DIFFRACTION' ? 6 2 A 236 230 A 303 297 ? A A 'X-RAY DIFFRACTION' ? # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A HIS -5 ? A HIS 1 2 1 Y 1 A HIS -4 ? A HIS 2 3 1 Y 1 A HIS -3 ? A HIS 3 4 1 Y 1 A HIS -2 ? A HIS 4 5 1 Y 1 A HIS -1 ? A HIS 5 6 1 Y 1 A HIS 0 ? A HIS 6 7 1 Y 1 A MET 1 ? A MET 7 8 1 Y 1 A THR 207 ? A THR 213 9 1 Y 1 A ASN 208 ? A ASN 214 10 1 Y 1 A THR 209 ? A THR 215 11 1 Y 1 A LYS 210 ? A LYS 216 12 1 Y 1 A THR 211 ? A THR 217 13 1 Y 1 A LYS 212 ? A LYS 218 14 1 Y 1 A ASP 213 ? A ASP 219 15 1 Y 1 A ASN 214 ? A ASN 220 16 1 Y 1 A SER 218 ? A SER 224 17 1 Y 1 A LYS 219 ? A LYS 225 18 1 Y 1 A ARG 220 ? A ARG 226 19 1 Y 1 A SER 221 ? A SER 227 20 1 Y 1 A THR 222 ? A THR 228 21 1 Y 1 A HIS 223 ? A HIS 229 22 1 Y 1 A LYS 224 ? A LYS 230 23 1 Y 1 A SER 225 ? A SER 231 24 1 Y 1 A GLY 226 ? A GLY 232 25 1 Y 1 A LYS 227 ? A LYS 233 26 1 Y 1 A VAL 228 ? A VAL 234 27 1 Y 1 A GLU 229 ? A GLU 235 28 1 Y 1 A ARG 298 ? A ARG 304 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 AMP P P N N 14 AMP O1P O N N 15 AMP O2P O N N 16 AMP O3P O N N 17 AMP "O5'" O N N 18 AMP "C5'" C N N 19 AMP "C4'" C N R 20 AMP "O4'" O N N 21 AMP "C3'" C N S 22 AMP "O3'" O N N 23 AMP "C2'" C N R 24 AMP "O2'" O N N 25 AMP "C1'" C N R 26 AMP N9 N Y N 27 AMP C8 C Y N 28 AMP N7 N Y N 29 AMP C5 C Y N 30 AMP C6 C Y N 31 AMP N6 N N N 32 AMP N1 N Y N 33 AMP C2 C Y N 34 AMP N3 N Y N 35 AMP C4 C Y N 36 AMP HOP2 H N N 37 AMP HOP3 H N N 38 AMP "H5'1" H N N 39 AMP "H5'2" H N N 40 AMP "H4'" H N N 41 AMP "H3'" H N N 42 AMP "HO3'" H N N 43 AMP "H2'" H N N 44 AMP "HO2'" H N N 45 AMP "H1'" H N N 46 AMP H8 H N N 47 AMP HN61 H N N 48 AMP HN62 H N N 49 AMP H2 H N N 50 ARG N N N N 51 ARG CA C N S 52 ARG C C N N 53 ARG O O N N 54 ARG CB C N N 55 ARG CG C N N 56 ARG CD C N N 57 ARG NE N N N 58 ARG CZ C N N 59 ARG NH1 N N N 60 ARG NH2 N N N 61 ARG OXT O N N 62 ARG H H N N 63 ARG H2 H N N 64 ARG HA H N N 65 ARG HB2 H N N 66 ARG HB3 H N N 67 ARG HG2 H N N 68 ARG HG3 H N N 69 ARG HD2 H N N 70 ARG HD3 H N N 71 ARG HE H N N 72 ARG HH11 H N N 73 ARG HH12 H N N 74 ARG HH21 H N N 75 ARG HH22 H N N 76 ARG HXT H N N 77 ASN N N N N 78 ASN CA C N S 79 ASN C C N N 80 ASN O O N N 81 ASN CB C N N 82 ASN CG C N N 83 ASN OD1 O N N 84 ASN ND2 N N N 85 ASN OXT O N N 86 ASN H H N N 87 ASN H2 H N N 88 ASN HA H N N 89 ASN HB2 H N N 90 ASN HB3 H N N 91 ASN HD21 H N N 92 ASN HD22 H N N 93 ASN HXT H N N 94 ASP N N N N 95 ASP CA C N S 96 ASP C C N N 97 ASP O O N N 98 ASP CB C N N 99 ASP CG C N N 100 ASP OD1 O N N 101 ASP OD2 O N N 102 ASP OXT O N N 103 ASP H H N N 104 ASP H2 H N N 105 ASP HA H N N 106 ASP HB2 H N N 107 ASP HB3 H N N 108 ASP HD2 H N N 109 ASP HXT H N N 110 CYS N N N N 111 CYS CA C N R 112 CYS C C N N 113 CYS O O N N 114 CYS CB C N N 115 CYS SG S N N 116 CYS OXT O N N 117 CYS H H N N 118 CYS H2 H N N 119 CYS HA H N N 120 CYS HB2 H N N 121 CYS HB3 H N N 122 CYS HG H N N 123 CYS HXT H N N 124 GLN N N N N 125 GLN CA C N S 126 GLN C C N N 127 GLN O O N N 128 GLN CB C N N 129 GLN CG C N N 130 GLN CD C N N 131 GLN OE1 O N N 132 GLN NE2 N N N 133 GLN OXT O N N 134 GLN H H N N 135 GLN H2 H N N 136 GLN HA H N N 137 GLN HB2 H N N 138 GLN HB3 H N N 139 GLN HG2 H N N 140 GLN HG3 H N N 141 GLN HE21 H N N 142 GLN HE22 H N N 143 GLN HXT H N N 144 GLU N N N N 145 GLU CA C N S 146 GLU C C N N 147 GLU O O N N 148 GLU CB C N N 149 GLU CG C N N 150 GLU CD C N N 151 GLU OE1 O N N 152 GLU OE2 O N N 153 GLU OXT O N N 154 GLU H H N N 155 GLU H2 H N N 156 GLU HA H N N 157 GLU HB2 H N N 158 GLU HB3 H N N 159 GLU HG2 H N N 160 GLU HG3 H N N 161 GLU HE2 H N N 162 GLU HXT H N N 163 GLY N N N N 164 GLY CA C N N 165 GLY C C N N 166 GLY O O N N 167 GLY OXT O N N 168 GLY H H N N 169 GLY H2 H N N 170 GLY HA2 H N N 171 GLY HA3 H N N 172 GLY HXT H N N 173 HIS N N N N 174 HIS CA C N S 175 HIS C C N N 176 HIS O O N N 177 HIS CB C N N 178 HIS CG C Y N 179 HIS ND1 N Y N 180 HIS CD2 C Y N 181 HIS CE1 C Y N 182 HIS NE2 N Y N 183 HIS OXT O N N 184 HIS H H N N 185 HIS H2 H N N 186 HIS HA H N N 187 HIS HB2 H N N 188 HIS HB3 H N N 189 HIS HD1 H N N 190 HIS HD2 H N N 191 HIS HE1 H N N 192 HIS HE2 H N N 193 HIS HXT H N N 194 HOH O O N N 195 HOH H1 H N N 196 HOH H2 H N N 197 ILE N N N N 198 ILE CA C N S 199 ILE C C N N 200 ILE O O N N 201 ILE CB C N S 202 ILE CG1 C N N 203 ILE CG2 C N N 204 ILE CD1 C N N 205 ILE OXT O N N 206 ILE H H N N 207 ILE H2 H N N 208 ILE HA H N N 209 ILE HB H N N 210 ILE HG12 H N N 211 ILE HG13 H N N 212 ILE HG21 H N N 213 ILE HG22 H N N 214 ILE HG23 H N N 215 ILE HD11 H N N 216 ILE HD12 H N N 217 ILE HD13 H N N 218 ILE HXT H N N 219 LEU N N N N 220 LEU CA C N S 221 LEU C C N N 222 LEU O O N N 223 LEU CB C N N 224 LEU CG C N N 225 LEU CD1 C N N 226 LEU CD2 C N N 227 LEU OXT O N N 228 LEU H H N N 229 LEU H2 H N N 230 LEU HA H N N 231 LEU HB2 H N N 232 LEU HB3 H N N 233 LEU HG H N N 234 LEU HD11 H N N 235 LEU HD12 H N N 236 LEU HD13 H N N 237 LEU HD21 H N N 238 LEU HD22 H N N 239 LEU HD23 H N N 240 LEU HXT H N N 241 LYS N N N N 242 LYS CA C N S 243 LYS C C N N 244 LYS O O N N 245 LYS CB C N N 246 LYS CG C N N 247 LYS CD C N N 248 LYS CE C N N 249 LYS NZ N N N 250 LYS OXT O N N 251 LYS H H N N 252 LYS H2 H N N 253 LYS HA H N N 254 LYS HB2 H N N 255 LYS HB3 H N N 256 LYS HG2 H N N 257 LYS HG3 H N N 258 LYS HD2 H N N 259 LYS HD3 H N N 260 LYS HE2 H N N 261 LYS HE3 H N N 262 LYS HZ1 H N N 263 LYS HZ2 H N N 264 LYS HZ3 H N N 265 LYS HXT H N N 266 MET N N N N 267 MET CA C N S 268 MET C C N N 269 MET O O N N 270 MET CB C N N 271 MET CG C N N 272 MET SD S N N 273 MET CE C N N 274 MET OXT O N N 275 MET H H N N 276 MET H2 H N N 277 MET HA H N N 278 MET HB2 H N N 279 MET HB3 H N N 280 MET HG2 H N N 281 MET HG3 H N N 282 MET HE1 H N N 283 MET HE2 H N N 284 MET HE3 H N N 285 MET HXT H N N 286 PHE N N N N 287 PHE CA C N S 288 PHE C C N N 289 PHE O O N N 290 PHE CB C N N 291 PHE CG C Y N 292 PHE CD1 C Y N 293 PHE CD2 C Y N 294 PHE CE1 C Y N 295 PHE CE2 C Y N 296 PHE CZ C Y N 297 PHE OXT O N N 298 PHE H H N N 299 PHE H2 H N N 300 PHE HA H N N 301 PHE HB2 H N N 302 PHE HB3 H N N 303 PHE HD1 H N N 304 PHE HD2 H N N 305 PHE HE1 H N N 306 PHE HE2 H N N 307 PHE HZ H N N 308 PHE HXT H N N 309 PRO N N N N 310 PRO CA C N S 311 PRO C C N N 312 PRO O O N N 313 PRO CB C N N 314 PRO CG C N N 315 PRO CD C N N 316 PRO OXT O N N 317 PRO H H N N 318 PRO HA H N N 319 PRO HB2 H N N 320 PRO HB3 H N N 321 PRO HG2 H N N 322 PRO HG3 H N N 323 PRO HD2 H N N 324 PRO HD3 H N N 325 PRO HXT H N N 326 SER N N N N 327 SER CA C N S 328 SER C C N N 329 SER O O N N 330 SER CB C N N 331 SER OG O N N 332 SER OXT O N N 333 SER H H N N 334 SER H2 H N N 335 SER HA H N N 336 SER HB2 H N N 337 SER HB3 H N N 338 SER HG H N N 339 SER HXT H N N 340 THR N N N N 341 THR CA C N S 342 THR C C N N 343 THR O O N N 344 THR CB C N R 345 THR OG1 O N N 346 THR CG2 C N N 347 THR OXT O N N 348 THR H H N N 349 THR H2 H N N 350 THR HA H N N 351 THR HB H N N 352 THR HG1 H N N 353 THR HG21 H N N 354 THR HG22 H N N 355 THR HG23 H N N 356 THR HXT H N N 357 TRP N N N N 358 TRP CA C N S 359 TRP C C N N 360 TRP O O N N 361 TRP CB C N N 362 TRP CG C Y N 363 TRP CD1 C Y N 364 TRP CD2 C Y N 365 TRP NE1 N Y N 366 TRP CE2 C Y N 367 TRP CE3 C Y N 368 TRP CZ2 C Y N 369 TRP CZ3 C Y N 370 TRP CH2 C Y N 371 TRP OXT O N N 372 TRP H H N N 373 TRP H2 H N N 374 TRP HA H N N 375 TRP HB2 H N N 376 TRP HB3 H N N 377 TRP HD1 H N N 378 TRP HE1 H N N 379 TRP HE3 H N N 380 TRP HZ2 H N N 381 TRP HZ3 H N N 382 TRP HH2 H N N 383 TRP HXT H N N 384 TYR N N N N 385 TYR CA C N S 386 TYR C C N N 387 TYR O O N N 388 TYR CB C N N 389 TYR CG C Y N 390 TYR CD1 C Y N 391 TYR CD2 C Y N 392 TYR CE1 C Y N 393 TYR CE2 C Y N 394 TYR CZ C Y N 395 TYR OH O N N 396 TYR OXT O N N 397 TYR H H N N 398 TYR H2 H N N 399 TYR HA H N N 400 TYR HB2 H N N 401 TYR HB3 H N N 402 TYR HD1 H N N 403 TYR HD2 H N N 404 TYR HE1 H N N 405 TYR HE2 H N N 406 TYR HH H N N 407 TYR HXT H N N 408 VAL N N N N 409 VAL CA C N S 410 VAL C C N N 411 VAL O O N N 412 VAL CB C N N 413 VAL CG1 C N N 414 VAL CG2 C N N 415 VAL OXT O N N 416 VAL H H N N 417 VAL H2 H N N 418 VAL HA H N N 419 VAL HB H N N 420 VAL HG11 H N N 421 VAL HG12 H N N 422 VAL HG13 H N N 423 VAL HG21 H N N 424 VAL HG22 H N N 425 VAL HG23 H N N 426 VAL HXT H N N 427 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 AMP P O1P doub N N 13 AMP P O2P sing N N 14 AMP P O3P sing N N 15 AMP P "O5'" sing N N 16 AMP O2P HOP2 sing N N 17 AMP O3P HOP3 sing N N 18 AMP "O5'" "C5'" sing N N 19 AMP "C5'" "C4'" sing N N 20 AMP "C5'" "H5'1" sing N N 21 AMP "C5'" "H5'2" sing N N 22 AMP "C4'" "O4'" sing N N 23 AMP "C4'" "C3'" sing N N 24 AMP "C4'" "H4'" sing N N 25 AMP "O4'" "C1'" sing N N 26 AMP "C3'" "O3'" sing N N 27 AMP "C3'" "C2'" sing N N 28 AMP "C3'" "H3'" sing N N 29 AMP "O3'" "HO3'" sing N N 30 AMP "C2'" "O2'" sing N N 31 AMP "C2'" "C1'" sing N N 32 AMP "C2'" "H2'" sing N N 33 AMP "O2'" "HO2'" sing N N 34 AMP "C1'" N9 sing N N 35 AMP "C1'" "H1'" sing N N 36 AMP N9 C8 sing Y N 37 AMP N9 C4 sing Y N 38 AMP C8 N7 doub Y N 39 AMP C8 H8 sing N N 40 AMP N7 C5 sing Y N 41 AMP C5 C6 sing Y N 42 AMP C5 C4 doub Y N 43 AMP C6 N6 sing N N 44 AMP C6 N1 doub Y N 45 AMP N6 HN61 sing N N 46 AMP N6 HN62 sing N N 47 AMP N1 C2 sing Y N 48 AMP C2 N3 doub Y N 49 AMP C2 H2 sing N N 50 AMP N3 C4 sing Y N 51 ARG N CA sing N N 52 ARG N H sing N N 53 ARG N H2 sing N N 54 ARG CA C sing N N 55 ARG CA CB sing N N 56 ARG CA HA sing N N 57 ARG C O doub N N 58 ARG C OXT sing N N 59 ARG CB CG sing N N 60 ARG CB HB2 sing N N 61 ARG CB HB3 sing N N 62 ARG CG CD sing N N 63 ARG CG HG2 sing N N 64 ARG CG HG3 sing N N 65 ARG CD NE sing N N 66 ARG CD HD2 sing N N 67 ARG CD HD3 sing N N 68 ARG NE CZ sing N N 69 ARG NE HE sing N N 70 ARG CZ NH1 sing N N 71 ARG CZ NH2 doub N N 72 ARG NH1 HH11 sing N N 73 ARG NH1 HH12 sing N N 74 ARG NH2 HH21 sing N N 75 ARG NH2 HH22 sing N N 76 ARG OXT HXT sing N N 77 ASN N CA sing N N 78 ASN N H sing N N 79 ASN N H2 sing N N 80 ASN CA C sing N N 81 ASN CA CB sing N N 82 ASN CA HA sing N N 83 ASN C O doub N N 84 ASN C OXT sing N N 85 ASN CB CG sing N N 86 ASN CB HB2 sing N N 87 ASN CB HB3 sing N N 88 ASN CG OD1 doub N N 89 ASN CG ND2 sing N N 90 ASN ND2 HD21 sing N N 91 ASN ND2 HD22 sing N N 92 ASN OXT HXT sing N N 93 ASP N CA sing N N 94 ASP N H sing N N 95 ASP N H2 sing N N 96 ASP CA C sing N N 97 ASP CA CB sing N N 98 ASP CA HA sing N N 99 ASP C O doub N N 100 ASP C OXT sing N N 101 ASP CB CG sing N N 102 ASP CB HB2 sing N N 103 ASP CB HB3 sing N N 104 ASP CG OD1 doub N N 105 ASP CG OD2 sing N N 106 ASP OD2 HD2 sing N N 107 ASP OXT HXT sing N N 108 CYS N CA sing N N 109 CYS N H sing N N 110 CYS N H2 sing N N 111 CYS CA C sing N N 112 CYS CA CB sing N N 113 CYS CA HA sing N N 114 CYS C O doub N N 115 CYS C OXT sing N N 116 CYS CB SG sing N N 117 CYS CB HB2 sing N N 118 CYS CB HB3 sing N N 119 CYS SG HG sing N N 120 CYS OXT HXT sing N N 121 GLN N CA sing N N 122 GLN N H sing N N 123 GLN N H2 sing N N 124 GLN CA C sing N N 125 GLN CA CB sing N N 126 GLN CA HA sing N N 127 GLN C O doub N N 128 GLN C OXT sing N N 129 GLN CB CG sing N N 130 GLN CB HB2 sing N N 131 GLN CB HB3 sing N N 132 GLN CG CD sing N N 133 GLN CG HG2 sing N N 134 GLN CG HG3 sing N N 135 GLN CD OE1 doub N N 136 GLN CD NE2 sing N N 137 GLN NE2 HE21 sing N N 138 GLN NE2 HE22 sing N N 139 GLN OXT HXT sing N N 140 GLU N CA sing N N 141 GLU N H sing N N 142 GLU N H2 sing N N 143 GLU CA C sing N N 144 GLU CA CB sing N N 145 GLU CA HA sing N N 146 GLU C O doub N N 147 GLU C OXT sing N N 148 GLU CB CG sing N N 149 GLU CB HB2 sing N N 150 GLU CB HB3 sing N N 151 GLU CG CD sing N N 152 GLU CG HG2 sing N N 153 GLU CG HG3 sing N N 154 GLU CD OE1 doub N N 155 GLU CD OE2 sing N N 156 GLU OE2 HE2 sing N N 157 GLU OXT HXT sing N N 158 GLY N CA sing N N 159 GLY N H sing N N 160 GLY N H2 sing N N 161 GLY CA C sing N N 162 GLY CA HA2 sing N N 163 GLY CA HA3 sing N N 164 GLY C O doub N N 165 GLY C OXT sing N N 166 GLY OXT HXT sing N N 167 HIS N CA sing N N 168 HIS N H sing N N 169 HIS N H2 sing N N 170 HIS CA C sing N N 171 HIS CA CB sing N N 172 HIS CA HA sing N N 173 HIS C O doub N N 174 HIS C OXT sing N N 175 HIS CB CG sing N N 176 HIS CB HB2 sing N N 177 HIS CB HB3 sing N N 178 HIS CG ND1 sing Y N 179 HIS CG CD2 doub Y N 180 HIS ND1 CE1 doub Y N 181 HIS ND1 HD1 sing N N 182 HIS CD2 NE2 sing Y N 183 HIS CD2 HD2 sing N N 184 HIS CE1 NE2 sing Y N 185 HIS CE1 HE1 sing N N 186 HIS NE2 HE2 sing N N 187 HIS OXT HXT sing N N 188 HOH O H1 sing N N 189 HOH O H2 sing N N 190 ILE N CA sing N N 191 ILE N H sing N N 192 ILE N H2 sing N N 193 ILE CA C sing N N 194 ILE CA CB sing N N 195 ILE CA HA sing N N 196 ILE C O doub N N 197 ILE C OXT sing N N 198 ILE CB CG1 sing N N 199 ILE CB CG2 sing N N 200 ILE CB HB sing N N 201 ILE CG1 CD1 sing N N 202 ILE CG1 HG12 sing N N 203 ILE CG1 HG13 sing N N 204 ILE CG2 HG21 sing N N 205 ILE CG2 HG22 sing N N 206 ILE CG2 HG23 sing N N 207 ILE CD1 HD11 sing N N 208 ILE CD1 HD12 sing N N 209 ILE CD1 HD13 sing N N 210 ILE OXT HXT sing N N 211 LEU N CA sing N N 212 LEU N H sing N N 213 LEU N H2 sing N N 214 LEU CA C sing N N 215 LEU CA CB sing N N 216 LEU CA HA sing N N 217 LEU C O doub N N 218 LEU C OXT sing N N 219 LEU CB CG sing N N 220 LEU CB HB2 sing N N 221 LEU CB HB3 sing N N 222 LEU CG CD1 sing N N 223 LEU CG CD2 sing N N 224 LEU CG HG sing N N 225 LEU CD1 HD11 sing N N 226 LEU CD1 HD12 sing N N 227 LEU CD1 HD13 sing N N 228 LEU CD2 HD21 sing N N 229 LEU CD2 HD22 sing N N 230 LEU CD2 HD23 sing N N 231 LEU OXT HXT sing N N 232 LYS N CA sing N N 233 LYS N H sing N N 234 LYS N H2 sing N N 235 LYS CA C sing N N 236 LYS CA CB sing N N 237 LYS CA HA sing N N 238 LYS C O doub N N 239 LYS C OXT sing N N 240 LYS CB CG sing N N 241 LYS CB HB2 sing N N 242 LYS CB HB3 sing N N 243 LYS CG CD sing N N 244 LYS CG HG2 sing N N 245 LYS CG HG3 sing N N 246 LYS CD CE sing N N 247 LYS CD HD2 sing N N 248 LYS CD HD3 sing N N 249 LYS CE NZ sing N N 250 LYS CE HE2 sing N N 251 LYS CE HE3 sing N N 252 LYS NZ HZ1 sing N N 253 LYS NZ HZ2 sing N N 254 LYS NZ HZ3 sing N N 255 LYS OXT HXT sing N N 256 MET N CA sing N N 257 MET N H sing N N 258 MET N H2 sing N N 259 MET CA C sing N N 260 MET CA CB sing N N 261 MET CA HA sing N N 262 MET C O doub N N 263 MET C OXT sing N N 264 MET CB CG sing N N 265 MET CB HB2 sing N N 266 MET CB HB3 sing N N 267 MET CG SD sing N N 268 MET CG HG2 sing N N 269 MET CG HG3 sing N N 270 MET SD CE sing N N 271 MET CE HE1 sing N N 272 MET CE HE2 sing N N 273 MET CE HE3 sing N N 274 MET OXT HXT sing N N 275 PHE N CA sing N N 276 PHE N H sing N N 277 PHE N H2 sing N N 278 PHE CA C sing N N 279 PHE CA CB sing N N 280 PHE CA HA sing N N 281 PHE C O doub N N 282 PHE C OXT sing N N 283 PHE CB CG sing N N 284 PHE CB HB2 sing N N 285 PHE CB HB3 sing N N 286 PHE CG CD1 doub Y N 287 PHE CG CD2 sing Y N 288 PHE CD1 CE1 sing Y N 289 PHE CD1 HD1 sing N N 290 PHE CD2 CE2 doub Y N 291 PHE CD2 HD2 sing N N 292 PHE CE1 CZ doub Y N 293 PHE CE1 HE1 sing N N 294 PHE CE2 CZ sing Y N 295 PHE CE2 HE2 sing N N 296 PHE CZ HZ sing N N 297 PHE OXT HXT sing N N 298 PRO N CA sing N N 299 PRO N CD sing N N 300 PRO N H sing N N 301 PRO CA C sing N N 302 PRO CA CB sing N N 303 PRO CA HA sing N N 304 PRO C O doub N N 305 PRO C OXT sing N N 306 PRO CB CG sing N N 307 PRO CB HB2 sing N N 308 PRO CB HB3 sing N N 309 PRO CG CD sing N N 310 PRO CG HG2 sing N N 311 PRO CG HG3 sing N N 312 PRO CD HD2 sing N N 313 PRO CD HD3 sing N N 314 PRO OXT HXT sing N N 315 SER N CA sing N N 316 SER N H sing N N 317 SER N H2 sing N N 318 SER CA C sing N N 319 SER CA CB sing N N 320 SER CA HA sing N N 321 SER C O doub N N 322 SER C OXT sing N N 323 SER CB OG sing N N 324 SER CB HB2 sing N N 325 SER CB HB3 sing N N 326 SER OG HG sing N N 327 SER OXT HXT sing N N 328 THR N CA sing N N 329 THR N H sing N N 330 THR N H2 sing N N 331 THR CA C sing N N 332 THR CA CB sing N N 333 THR CA HA sing N N 334 THR C O doub N N 335 THR C OXT sing N N 336 THR CB OG1 sing N N 337 THR CB CG2 sing N N 338 THR CB HB sing N N 339 THR OG1 HG1 sing N N 340 THR CG2 HG21 sing N N 341 THR CG2 HG22 sing N N 342 THR CG2 HG23 sing N N 343 THR OXT HXT sing N N 344 TRP N CA sing N N 345 TRP N H sing N N 346 TRP N H2 sing N N 347 TRP CA C sing N N 348 TRP CA CB sing N N 349 TRP CA HA sing N N 350 TRP C O doub N N 351 TRP C OXT sing N N 352 TRP CB CG sing N N 353 TRP CB HB2 sing N N 354 TRP CB HB3 sing N N 355 TRP CG CD1 doub Y N 356 TRP CG CD2 sing Y N 357 TRP CD1 NE1 sing Y N 358 TRP CD1 HD1 sing N N 359 TRP CD2 CE2 doub Y N 360 TRP CD2 CE3 sing Y N 361 TRP NE1 CE2 sing Y N 362 TRP NE1 HE1 sing N N 363 TRP CE2 CZ2 sing Y N 364 TRP CE3 CZ3 doub Y N 365 TRP CE3 HE3 sing N N 366 TRP CZ2 CH2 doub Y N 367 TRP CZ2 HZ2 sing N N 368 TRP CZ3 CH2 sing Y N 369 TRP CZ3 HZ3 sing N N 370 TRP CH2 HH2 sing N N 371 TRP OXT HXT sing N N 372 TYR N CA sing N N 373 TYR N H sing N N 374 TYR N H2 sing N N 375 TYR CA C sing N N 376 TYR CA CB sing N N 377 TYR CA HA sing N N 378 TYR C O doub N N 379 TYR C OXT sing N N 380 TYR CB CG sing N N 381 TYR CB HB2 sing N N 382 TYR CB HB3 sing N N 383 TYR CG CD1 doub Y N 384 TYR CG CD2 sing Y N 385 TYR CD1 CE1 sing Y N 386 TYR CD1 HD1 sing N N 387 TYR CD2 CE2 doub Y N 388 TYR CD2 HD2 sing N N 389 TYR CE1 CZ doub Y N 390 TYR CE1 HE1 sing N N 391 TYR CE2 CZ sing Y N 392 TYR CE2 HE2 sing N N 393 TYR CZ OH sing N N 394 TYR OH HH sing N N 395 TYR OXT HXT sing N N 396 VAL N CA sing N N 397 VAL N H sing N N 398 VAL N H2 sing N N 399 VAL CA C sing N N 400 VAL CA CB sing N N 401 VAL CA HA sing N N 402 VAL C O doub N N 403 VAL C OXT sing N N 404 VAL CB CG1 sing N N 405 VAL CB CG2 sing N N 406 VAL CB HB sing N N 407 VAL CG1 HG11 sing N N 408 VAL CG1 HG12 sing N N 409 VAL CG1 HG13 sing N N 410 VAL CG2 HG21 sing N N 411 VAL CG2 HG22 sing N N 412 VAL CG2 HG23 sing N N 413 VAL OXT HXT sing N N 414 # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1FVI _pdbx_initial_refinement_model.details 'PDB ENTRY 1FVI' # _atom_sites.entry_id 1P8L _atom_sites.fract_transf_matrix[1][1] 0.010982 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016509 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014231 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_