HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-MAY-03 1PA4 TITLE SOLUTION STRUCTURE OF A PUTATIVE RIBOSOME-BINDING FACTOR FROM TITLE 2 MYCOPLASMA PNEUMONIAE (MPN156) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROBABLE RIBOSOME-BINDING FACTOR A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOPLASMA PNEUMONIAE; SOURCE 3 ORGANISM_TAXID: 2104; SOURCE 4 GENE: MPN156; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSKB3 KEYWDS RIBOSOME-BINDING FACTOR, STRUCTURAL GENOMICS, DISTANT HOMOLOGY, BSGC KEYWDS 2 STRUCTURE FUNDED BY NIH, PROTEIN STRUCTURE INITIATIVE, PSI, BERKELEY KEYWDS 3 STRUCTURAL GENOMICS CENTER, UNKNOWN FUNCTION EXPDTA SOLUTION NMR NUMMDL 16 AUTHOR S.M.RUBIN,J.G.PELTON,H.YOKOTA,R.KIM,D.E.WEMMER,BERKELEY STRUCTURAL AUTHOR 2 GENOMICS CENTER (BSGC) REVDAT 5 23-FEB-22 1PA4 1 REMARK REVDAT 4 24-FEB-09 1PA4 1 VERSN REVDAT 3 25-JAN-05 1PA4 1 AUTHOR KEYWDS REMARK REVDAT 2 24-AUG-04 1PA4 1 KEYWDS REVDAT 1 02-MAR-04 1PA4 0 JRNL AUTH S.M.RUBIN,J.G.PELTON,H.YOKOTA,R.KIM,D.E.WEMMER JRNL TITL SOLUTION STRUCTURE OF A PUTATIVE RIBOSOME BINDING PROTEIN JRNL TITL 2 FROM MYCOPLASMA PNEUMONIAE AND COMPARISON TO A DISTANT JRNL TITL 3 HOMOLOG. JRNL REF J.STRUCT.FUNCT.GENOM. V. 4 235 2003 JRNL REFN ISSN 1345-711X JRNL PMID 15185964 JRNL DOI 10.1023/B:JSFG.0000016127.57320.82 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH Y.J.HUANG,G.V.SWAPNA,P.K.RAJAN,H.KE,B.XIA,K.SHUKLA,M.INOUYE, REMARK 1 AUTH 2 G.T.MONTELIONE REMARK 1 TITL SOLUTION NMR STRUCTURE OF RIBOSOME-BINDING FACTOR A (RBFA), REMARK 1 TITL 2 A COLD-SHOCK ADAPTATION PROTEIN FROM ESCHERICHIA COLI REMARK 1 REF J.MOL.BIOL. V. 327 521 2003 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1016/S0022-2836(03)00061-5 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 1, DYANA 1.5 REMARK 3 AUTHORS : DELAGLIO (NMRPIPE), GUNTERT (DYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REFINEMENT DETAILS CAN BE FOUND IN THE REMARK 3 PRIMARY CITATION ABOVE. REMARK 4 REMARK 4 1PA4 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019197. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.6 REMARK 210 IONIC STRENGTH : 50 MM NACL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : ~1 MM MPN156 U-15N; ~1 MM MPN156 REMARK 210 U-15N,U-13C REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 4D_13C REMARK 210 -SEPARATED_NOESY; 4D_13C/15N- REMARK 210 SEPARATED_NOESY; HNHA; H/D REMARK 210 EXCHANGE REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRVIEW 5.0.4 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 16 REMARK 210 CONFORMERS, SELECTION CRITERIA : SUBMITTED CONFORMERS ARE THOSE REMARK 210 WITH LOWEST DYANA TARGET REMARK 210 FUNCTIONS. REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: DEPOSITED STRUCTURES INCLUDE RESIDUES 6-101 REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-16 REMARK 465 RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 TYR A 4 REMARK 465 LYS A 5 REMARK 465 ARG A 102 REMARK 465 ILE A 103 REMARK 465 GLU A 104 REMARK 465 SER A 105 REMARK 465 ILE A 106 REMARK 465 ILE A 107 REMARK 465 ASN A 108 REMARK 465 SER A 109 REMARK 465 LEU A 110 REMARK 465 LYS A 111 REMARK 465 LYS A 112 REMARK 465 SER A 113 REMARK 465 LYS A 114 REMARK 465 PRO A 115 REMARK 465 ASN A 116 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLU A 7 -75.80 -168.49 REMARK 500 1 ARG A 8 -168.79 49.09 REMARK 500 1 VAL A 21 -30.22 -38.57 REMARK 500 1 HIS A 23 -7.59 90.99 REMARK 500 1 ILE A 25 88.89 70.29 REMARK 500 1 TYR A 26 122.05 -37.80 REMARK 500 1 ASN A 27 94.35 59.44 REMARK 500 1 GLU A 28 121.53 -35.96 REMARK 500 1 THR A 29 -67.80 -146.51 REMARK 500 1 HIS A 34 85.98 82.32 REMARK 500 1 HIS A 37 -64.39 -145.53 REMARK 500 1 VAL A 38 90.66 40.19 REMARK 500 1 ASP A 42 -69.32 82.12 REMARK 500 1 ASP A 43 -53.25 -169.84 REMARK 500 1 LEU A 44 18.87 -149.89 REMARK 500 1 LEU A 51 137.64 63.22 REMARK 500 1 ASP A 52 73.50 -152.99 REMARK 500 1 CYS A 53 -148.74 -71.06 REMARK 500 1 ASN A 55 35.02 -167.51 REMARK 500 1 ARG A 56 -0.51 78.44 REMARK 500 1 ASN A 80 -79.10 -102.32 REMARK 500 1 LEU A 81 -163.52 -76.90 REMARK 500 1 TYR A 82 71.17 -173.74 REMARK 500 1 ALA A 84 -70.08 -53.48 REMARK 500 1 ALA A 86 -43.96 -159.53 REMARK 500 1 GLN A 88 142.95 158.25 REMARK 500 1 ASP A 94 67.47 -167.73 REMARK 500 1 ALA A 96 -46.37 84.43 REMARK 500 1 ILE A 97 -44.59 -156.83 REMARK 500 1 ASN A 99 -151.87 -162.09 REMARK 500 2 GLU A 7 94.09 -166.96 REMARK 500 2 ARG A 8 -104.54 -61.86 REMARK 500 2 HIS A 23 27.51 -150.35 REMARK 500 2 TYR A 26 95.58 -35.04 REMARK 500 2 ASN A 27 131.02 81.99 REMARK 500 2 GLU A 28 61.61 -67.88 REMARK 500 2 THR A 29 -76.00 -87.76 REMARK 500 2 HIS A 37 43.42 -161.02 REMARK 500 2 ASP A 42 15.22 82.92 REMARK 500 2 ASP A 43 -32.57 89.45 REMARK 500 2 LEU A 44 -30.82 168.67 REMARK 500 2 LEU A 45 -38.17 -35.22 REMARK 500 2 LEU A 51 140.32 68.75 REMARK 500 2 CYS A 53 -160.74 -60.70 REMARK 500 2 ASN A 55 -43.76 -167.58 REMARK 500 2 ARG A 56 -36.39 -177.54 REMARK 500 2 ASN A 67 43.81 -77.75 REMARK 500 2 GLN A 68 -27.67 176.04 REMARK 500 2 TYR A 82 112.36 56.88 REMARK 500 2 ALA A 84 -39.33 -37.19 REMARK 500 REMARK 500 THIS ENTRY HAS 497 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 650 REMARK 650 HELIX REMARK 650 DETERMINATION METHOD: AUTHOR REMARK 700 REMARK 700 SHEET REMARK 700 DETERMINATION METHOD: AUTHOR REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 5796 RELATED DB: BMRB REMARK 900 RESONANCE ASSIGNMENTS FOR MPN156 REMARK 900 RELATED ID: 1KKG RELATED DB: PDB REMARK 900 RIBOSOME-BINDING FACTOR A FROM E. COLI REMARK 900 RELATED ID: BSGCAIR30410 RELATED DB: TARGETDB DBREF 1PA4 A 1 116 UNP P75589 RBFA_MYCPN 1 116 SEQRES 1 A 116 MET ALA SER TYR LYS LYS GLU ARG LEU GLU ASN ASP ILE SEQRES 2 A 116 ILE ARG LEU ILE ASN ARG THR VAL ILE HIS GLU ILE TYR SEQRES 3 A 116 ASN GLU THR VAL LYS THR GLY HIS VAL THR HIS VAL LYS SEQRES 4 A 116 LEU SER ASP ASP LEU LEU HIS VAL THR VAL TYR LEU ASP SEQRES 5 A 116 CYS TYR ASN ARG GLU GLN ILE ASP ARG VAL VAL GLY ALA SEQRES 6 A 116 PHE ASN GLN ALA LYS GLY VAL PHE SER ARG VAL LEU ALA SEQRES 7 A 116 HIS ASN LEU TYR LEU ALA LYS ALA VAL GLN ILE HIS PHE SEQRES 8 A 116 VAL LYS ASP LYS ALA ILE ASP ASN ALA MET ARG ILE GLU SEQRES 9 A 116 SER ILE ILE ASN SER LEU LYS LYS SER LYS PRO ASN HELIX 1 1 ARG A 8 ILE A 22 1 15 HELIX 2 2 VAL A 30 THR A 32 1 3 HELIX 3 3 ILE A 59 GLN A 68 1 10 HELIX 4 4 LYS A 70 ASN A 80 1 11 SHEET 1 A 3 HIS A 34 SER A 41 0 SHEET 2 A 3 HIS A 46 ASP A 52 -1 O HIS A 46 N SER A 41 SHEET 3 A 3 GLN A 88 VAL A 92 1 O HIS A 90 N VAL A 49 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1