HEADER RNA BINDING PROTEIN 15-MAY-03 1PC0 TITLE NMR STRUCTURE OF THE ARCHAEAL HOMOLOGUE OF RNASE P PROTEIN RPP29 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN AF1917; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUE 17-77; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARCHAEOGLOBUS FULGIDUS; SOURCE 3 ORGANISM_TAXID: 2234; SOURCE 4 GENE: AF1917; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMAL-C2T KEYWDS SANDWICH, BETA-SHEET, RNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.J.SIDOTE,D.W.HOFFMAN REVDAT 3 23-FEB-22 1PC0 1 REMARK REVDAT 2 24-FEB-09 1PC0 1 VERSN REVDAT 1 09-DEC-03 1PC0 0 JRNL AUTH D.J.SIDOTE,D.W.HOFFMAN JRNL TITL NMR STRUCTURE OF AN ARCHAEAL HOMOLOGUE OF RIBONUCLEASE P JRNL TITL 2 PROTEIN RPP29 JRNL REF BIOCHEMISTRY V. 42 13541 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14622001 JRNL DOI 10.1021/BI030170Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER, A. T. REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 651 RESTRAINTS, 554 ARE NOE- REMARK 3 DERIVED REMARK 3 DISTANCE CONSTRAINTS, 70 DIHEDRAL ANGLE RESTRAINTS,27 DISTANCE REMARK 3 RESTRAINTS REMARK 3 FROM HYDROGEN BONDS. REMARK 4 REMARK 4 1PC0 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019222. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303 REMARK 210 PH : 5.8; 3.0 REMARK 210 IONIC STRENGTH : 100MM; 100MM REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.8 MM RPP29 U-15N;10MM REMARK 210 POSTASSIUM PHOSPHATE PH 5.8 REMARK 210 100MM SODIUM CHLORIDE 10MM REMARK 210 SODIUM AZIDE; 1.8 MM RPP29 U-15N; REMARK 210 10MM POSTASSIUM PHOSPHATE PH 3.0 REMARK 210 100MM SODIUM CHLORIDE 10MM REMARK 210 SODIUM AZIDE; 1.8 MM RPP29 U-15N; REMARK 210 U-13C; 10MM POSTASSIUM REMARK 210 PHOSPHATE PH 5.8 100MM SODIUM REMARK 210 CHLORIDE 10MM SODIUM AZIDE; 1.8 REMARK 210 MM RPP29; 10MM POSTASSIUM REMARK 210 PHOSPHATE PH 5.8 100MM SODIUM REMARK 210 CHLORIDE 10MM SODIUM AZIDE; 1.8 REMARK 210 MM RPP29; 10MM POSTASSIUM REMARK 210 PHOSPHATE PH 3.0 100MM SODIUM REMARK 210 CHLORIDE 10MM SODIUM AZIDE; 1.8 REMARK 210 MM RPP29; 10MM POSTASSIUM REMARK 210 PHOSPHATE PH 5.8 100MM SODIUM REMARK 210 CHLORIDE 10MM SODIUM AZIDE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR AND 3D HETERONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A 25 133.09 89.90 REMARK 500 1 PRO A 26 82.43 -54.37 REMARK 500 1 ASN A 27 157.39 177.77 REMARK 500 1 SER A 29 55.03 -177.43 REMARK 500 1 ASP A 39 73.84 71.16 REMARK 500 1 ASN A 43 -91.80 -149.60 REMARK 500 1 THR A 49 -88.75 -103.40 REMARK 500 1 GLU A 50 -53.01 -141.16 REMARK 500 1 LYS A 58 -33.44 -36.59 REMARK 500 1 ARG A 61 -175.16 54.41 REMARK 500 2 SER A 25 99.59 69.28 REMARK 500 2 ASN A 27 151.56 -36.78 REMARK 500 2 SER A 29 53.45 -94.60 REMARK 500 2 GLU A 30 171.19 -42.73 REMARK 500 2 THR A 41 40.95 -149.86 REMARK 500 2 ASN A 43 -66.26 -171.56 REMARK 500 2 THR A 49 -88.22 -107.09 REMARK 500 2 GLU A 50 -55.61 -138.63 REMARK 500 2 LYS A 58 65.44 64.23 REMARK 500 2 ARG A 59 177.43 65.01 REMARK 500 2 ARG A 61 -163.34 -58.68 REMARK 500 2 LYS A 68 66.42 -69.44 REMARK 500 3 SER A 25 103.63 66.85 REMARK 500 3 ASN A 27 156.51 -37.45 REMARK 500 3 GLU A 30 150.03 62.04 REMARK 500 3 GLU A 40 -77.01 -43.17 REMARK 500 3 GLN A 42 63.72 60.43 REMARK 500 3 ASN A 43 -61.77 179.46 REMARK 500 3 THR A 49 -92.72 -131.23 REMARK 500 3 GLU A 50 -91.28 -90.39 REMARK 500 3 LYS A 68 66.58 -68.33 REMARK 500 4 SER A 25 107.41 75.84 REMARK 500 4 ASN A 27 159.89 -40.00 REMARK 500 4 GLU A 30 -171.77 45.60 REMARK 500 4 THR A 41 50.03 -162.16 REMARK 500 4 ASN A 43 -74.48 -175.76 REMARK 500 4 THR A 49 -89.22 -109.27 REMARK 500 4 GLU A 50 -59.86 -130.43 REMARK 500 4 LYS A 51 -8.01 -59.27 REMARK 500 4 LYS A 58 -31.45 -39.36 REMARK 500 4 ARG A 61 -172.02 56.17 REMARK 500 5 SER A 25 120.34 61.87 REMARK 500 5 ASN A 27 168.96 -46.28 REMARK 500 5 GLU A 30 171.80 61.11 REMARK 500 5 THR A 41 45.35 -163.70 REMARK 500 5 ASN A 43 -65.31 -172.10 REMARK 500 5 THR A 49 -114.62 -134.77 REMARK 500 5 GLU A 50 -89.90 -64.19 REMARK 500 5 LYS A 58 39.69 25.24 REMARK 500 5 ARG A 59 -168.26 178.46 REMARK 500 REMARK 500 THIS ENTRY HAS 105 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1PC0 A 17 77 UNP O28362 RNP1_ARCFU 17 77 SEQRES 1 A 61 GLY LEU MET VAL GLU VAL VAL GLU SER PRO ASN HIS SER SEQRES 2 A 61 GLU VAL GLY ILE LYS GLY GLU VAL VAL ASP GLU THR GLN SEQRES 3 A 61 ASN THR LEU LYS ILE MET THR GLU LYS GLY LEU LYS VAL SEQRES 4 A 61 VAL ALA LYS ARG GLY ARG THR PHE ARG VAL TRP TYR LYS SEQRES 5 A 61 GLY LYS ILE MET ARG ILE LYS GLY ASP SHEET 1 A 6 LEU A 53 VAL A 56 0 SHEET 2 A 6 LEU A 45 MET A 48 -1 N LEU A 45 O VAL A 56 SHEET 3 A 6 VAL A 31 VAL A 38 -1 N VAL A 38 O LYS A 46 SHEET 4 A 6 MET A 19 GLU A 24 -1 N VAL A 20 O GLY A 35 SHEET 5 A 6 THR A 62 TRP A 66 -1 O ARG A 64 N GLU A 21 SHEET 6 A 6 ILE A 71 LYS A 75 -1 O ILE A 74 N PHE A 63 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1