HEADER ISOMERASE 16-MAY-03 1PCM TITLE ENZYME-LIGAND COMPLEX OF P. AERUGINOSA PMM/PGM COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHOMANNOMUTASE; COMPND 3 CHAIN: X; COMPND 4 SYNONYM: PMM; COMPND 5 EC: 5.4.2.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PSEUDOMONAS AERUGINOSA; SOURCE 3 ORGANISM_TAXID: 287; SOURCE 4 GENE: ALGC OR PA5322; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: B121(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET3-A KEYWDS ALPHA/BETA PROTEIN, PHOSPHOHEXOMUTASE, PHOSPHOSERINE, ENZYME-LIGAND KEYWDS 2 COMPLEX, ENZYME-METAL COMPLEX, ISOMERASE EXPDTA X-RAY DIFFRACTION AUTHOR C.REGNI,P.A.TIPTON,L.J.BEAMER REVDAT 6 30-OCT-24 1PCM 1 REMARK REVDAT 5 16-AUG-23 1PCM 1 HETSYN REVDAT 4 29-JUL-20 1PCM 1 COMPND REMARK SEQADV HETNAM REVDAT 4 2 1 LINK SITE REVDAT 3 13-JUL-11 1PCM 1 VERSN REVDAT 2 24-FEB-09 1PCM 1 VERSN REVDAT 1 20-JAN-04 1PCM 0 JRNL AUTH C.REGNI,L.NAUGHT,P.A.TIPTON,L.J.BEAMER JRNL TITL STRUCTURAL BASIS OF DIVERSE SUBSTRATE RECOGNITION BY THE JRNL TITL 2 ENZYME PMM/PGM FROM P. AERUGINOSA. JRNL REF STRUCTURE V. 12 55 2004 JRNL REFN ISSN 0969-2126 JRNL PMID 14725765 JRNL DOI 10.1016/J.STR.2003.11.015 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.1.24 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.85 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 33259 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.167 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1753 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4766 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 14.30 REMARK 3 BIN R VALUE (WORKING SET) : 0.2130 REMARK 3 BIN FREE R VALUE SET COUNT : 258 REMARK 3 BIN FREE R VALUE : 0.2600 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3418 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 17 REMARK 3 SOLVENT ATOMS : 341 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 21.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.36 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.22000 REMARK 3 B22 (A**2) : -0.86000 REMARK 3 B33 (A**2) : 2.09000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.132 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.089 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.045 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3500 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3250 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4765 ; 1.266 ; 1.970 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7534 ; 0.832 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 5.729 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 552 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3936 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 686 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 718 ; 0.198 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3898 ; 0.241 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): 2060 ; 0.083 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 274 ; 0.160 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 65 ; 0.300 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 35 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2255 ; 0.600 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3621 ; 1.106 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1245 ; 1.735 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1144 ; 2.875 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : X 9 X 463 REMARK 3 ORIGIN FOR THE GROUP (A): -49.8047 -18.2162 10.8582 REMARK 3 T TENSOR REMARK 3 T11: 0.0262 T22: 0.0276 REMARK 3 T33: 0.0057 T12: -0.0011 REMARK 3 T13: -0.0024 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.2428 L22: 0.2800 REMARK 3 L33: 0.3045 L12: -0.0320 REMARK 3 L13: 0.1847 L23: -0.0515 REMARK 3 S TENSOR REMARK 3 S11: 0.0052 S12: -0.0147 S13: -0.0129 REMARK 3 S21: 0.0403 S22: 0.0205 S23: 0.0326 REMARK 3 S31: 0.0075 S32: -0.0442 S33: -0.0256 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 1PCM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019235. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-NOV-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : BENT GE(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35051 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.60000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.35800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: RIGID BODY FOLLOWED BY REMARK 200 REGULAR REFINEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1P5G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NA K TARTRATE, HEPES, PH 7.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.32400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.69950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.09300 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.69950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.32400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.09300 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: X REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET X 1 REMARK 465 SER X 2 REMARK 465 THR X 3 REMARK 465 ALA X 4 REMARK 465 LYS X 5 REMARK 465 ALA X 6 REMARK 465 PRO X 7 REMARK 465 THR X 8 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU X 30 CG CD OE1 OE2 REMARK 470 LYS X 66 CG CD CE NZ REMARK 470 GLU X 98 CG CD OE1 OE2 REMARK 470 GLU X 129 CG CD OE1 OE2 REMARK 470 GLU X 151 CG CD OE1 OE2 REMARK 470 ARG X 164 CG CD NE CZ NH1 NH2 REMARK 470 GLU X 205 CG CD OE1 OE2 REMARK 470 HIS X 214 CG ND1 CD2 CE1 NE2 REMARK 470 LYS X 219 CG CD CE NZ REMARK 470 LYS X 224 CG CD CE NZ REMARK 470 LYS X 231 CG CD CE NZ REMARK 470 ARG X 247 CG CD NE CZ NH1 NH2 REMARK 470 LYS X 316 CG CD CE NZ REMARK 470 GLN X 357 CG CD OE1 NE2 REMARK 470 GLN X 397 CG CD OE1 NE2 REMARK 470 GLU X 439 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH X 893 O HOH X 935 4445 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP X 261 CB - CG - OD2 ANGL. DEV. = 7.5 DEGREES REMARK 500 ASP X 340 CB - CG - OD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 LEU X 431 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP X 18 -172.33 -170.07 REMARK 500 ASP X 25 -88.02 -108.36 REMARK 500 SEP X 108 -112.03 59.69 REMARK 500 PRO X 111 160.82 -48.95 REMARK 500 ASN X 128 -118.83 50.34 REMARK 500 ILE X 187 -38.22 -151.61 REMARK 500 ASN X 212 -65.11 -105.38 REMARK 500 TRP X 336 -152.65 -152.89 REMARK 500 ASP X 341 104.89 -161.47 REMARK 500 GLU X 375 128.40 -35.98 REMARK 500 VAL X 380 -127.18 -118.74 REMARK 500 PRO X 462 40.90 -89.74 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN X 500 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SEP X 108 O3P REMARK 620 2 ASP X 242 OD2 103.1 REMARK 620 3 ASP X 244 OD2 144.9 98.3 REMARK 620 4 ASP X 246 OD1 99.3 108.4 99.9 REMARK 620 N 1 2 3 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1K35 RELATED DB: PDB REMARK 900 APO PMM/PGM STRUCTURE REMARK 900 RELATED ID: 1K2Y RELATED DB: PDB REMARK 900 S108A MUTANT OF PMM/PGM REMARK 900 RELATED ID: 1P5D RELATED DB: PDB REMARK 900 PMM/PGM WITH D-GLUCOSE 1-PHOSPHATE BOUND REMARK 900 RELATED ID: 1P5G RELATED DB: PDB REMARK 900 PMM/PGM WITH D-GLUCOSE 6-PHOSPHATE BOUND REMARK 900 RELATED ID: 1PCJ RELATED DB: PDB REMARK 900 PMM/PGM WITH D-MANNOSE 1-PHOSPHATE BOUND DBREF 1PCM X 1 463 UNP P26276 ALGC_PSEAE 0 462 SEQADV 1PCM SEP X 108 UNP P26276 SER 107 MODIFIED RESIDUE SEQRES 1 X 463 MET SER THR ALA LYS ALA PRO THR LEU PRO ALA SER ILE SEQRES 2 X 463 PHE ARG ALA TYR ASP ILE ARG GLY VAL VAL GLY ASP THR SEQRES 3 X 463 LEU THR ALA GLU THR ALA TYR TRP ILE GLY ARG ALA ILE SEQRES 4 X 463 GLY SER GLU SER LEU ALA ARG GLY GLU PRO CYS VAL ALA SEQRES 5 X 463 VAL GLY ARG ASP GLY ARG LEU SER GLY PRO GLU LEU VAL SEQRES 6 X 463 LYS GLN LEU ILE GLN GLY LEU VAL ASP CYS GLY CYS GLN SEQRES 7 X 463 VAL SER ASP VAL GLY MET VAL PRO THR PRO VAL LEU TYR SEQRES 8 X 463 TYR ALA ALA ASN VAL LEU GLU GLY LYS SER GLY VAL MET SEQRES 9 X 463 LEU THR GLY SEP HIS ASN PRO PRO ASP TYR ASN GLY PHE SEQRES 10 X 463 LYS ILE VAL VAL ALA GLY GLU THR LEU ALA ASN GLU GLN SEQRES 11 X 463 ILE GLN ALA LEU ARG GLU ARG ILE GLU LYS ASN ASP LEU SEQRES 12 X 463 ALA SER GLY VAL GLY SER VAL GLU GLN VAL ASP ILE LEU SEQRES 13 X 463 PRO ARG TYR PHE LYS GLN ILE ARG ASP ASP ILE ALA MET SEQRES 14 X 463 ALA LYS PRO MET LYS VAL VAL VAL ASP CYS GLY ASN GLY SEQRES 15 X 463 VAL ALA GLY VAL ILE ALA PRO GLN LEU ILE GLU ALA LEU SEQRES 16 X 463 GLY CYS SER VAL ILE PRO LEU TYR CYS GLU VAL ASP GLY SEQRES 17 X 463 ASN PHE PRO ASN HIS HIS PRO ASP PRO GLY LYS PRO GLU SEQRES 18 X 463 ASN LEU LYS ASP LEU ILE ALA LYS VAL LYS ALA GLU ASN SEQRES 19 X 463 ALA ASP LEU GLY LEU ALA PHE ASP GLY ASP GLY ASP ARG SEQRES 20 X 463 VAL GLY VAL VAL THR ASN THR GLY THR ILE ILE TYR PRO SEQRES 21 X 463 ASP ARG LEU LEU MET LEU PHE ALA LYS ASP VAL VAL SER SEQRES 22 X 463 ARG ASN PRO GLY ALA ASP ILE ILE PHE ASP VAL LYS CYS SEQRES 23 X 463 THR ARG ARG LEU ILE ALA LEU ILE SER GLY TYR GLY GLY SEQRES 24 X 463 ARG PRO VAL MET TRP LYS THR GLY HIS SER LEU ILE LYS SEQRES 25 X 463 LYS LYS MET LYS GLU THR GLY ALA LEU LEU ALA GLY GLU SEQRES 26 X 463 MET SER GLY HIS VAL PHE PHE LYS GLU ARG TRP PHE GLY SEQRES 27 X 463 PHE ASP ASP GLY ILE TYR SER ALA ALA ARG LEU LEU GLU SEQRES 28 X 463 ILE LEU SER GLN ASP GLN ARG ASP SER GLU HIS VAL PHE SEQRES 29 X 463 SER ALA PHE PRO SER ASP ILE SER THR PRO GLU ILE ASN SEQRES 30 X 463 ILE THR VAL THR GLU ASP SER LYS PHE ALA ILE ILE GLU SEQRES 31 X 463 ALA LEU GLN ARG ASP ALA GLN TRP GLY GLU GLY ASN ILE SEQRES 32 X 463 THR THR LEU ASP GLY VAL ARG VAL ASP TYR PRO LYS GLY SEQRES 33 X 463 TRP GLY LEU VAL ARG ALA SER ASN THR THR PRO VAL LEU SEQRES 34 X 463 VAL LEU ARG PHE GLU ALA ASP THR GLU GLU GLU LEU GLU SEQRES 35 X 463 ARG ILE LYS THR VAL PHE ARG ASN GLN LEU LYS ALA VAL SEQRES 36 X 463 ASP SER SER LEU PRO VAL PRO PHE MODRES 1PCM SEP X 108 SER PHOSPHOSERINE HET SEP X 108 10 HET ZN X 500 1 HET M6P X 600 16 HETNAM SEP PHOSPHOSERINE HETNAM ZN ZINC ION HETNAM M6P 6-O-PHOSPHONO-ALPHA-D-MANNOPYRANOSE HETSYN SEP PHOSPHONOSERINE HETSYN M6P ALPHA-D-MANNOSE-6-PHOSPHATE; 6-O-PHOSPHONO-ALPHA-D- HETSYN 2 M6P MANNOSE; 6-O-PHOSPHONO-D-MANNOSE; 6-O-PHOSPHONO- HETSYN 3 M6P MANNOSE FORMUL 1 SEP C3 H8 N O6 P FORMUL 2 ZN ZN 2+ FORMUL 3 M6P C6 H13 O9 P FORMUL 4 HOH *341(H2 O) HELIX 1 1 PRO X 10 PHE X 14 5 5 HELIX 2 2 THR X 28 ARG X 46 1 19 HELIX 3 3 SER X 60 ASP X 74 1 15 HELIX 4 4 PRO X 86 LEU X 97 1 12 HELIX 5 5 ASN X 128 ASN X 141 1 14 HELIX 6 6 ILE X 155 ILE X 167 1 13 HELIX 7 7 GLY X 182 VAL X 186 5 5 HELIX 8 8 ILE X 187 LEU X 195 1 9 HELIX 9 9 LYS X 219 ASN X 222 5 4 HELIX 10 10 LEU X 223 GLU X 233 1 11 HELIX 11 11 TYR X 259 ASN X 275 1 17 HELIX 12 12 THR X 287 TYR X 297 1 11 HELIX 13 13 GLY X 307 GLY X 319 1 13 HELIX 14 14 ASP X 341 GLN X 355 1 15 HELIX 15 15 ASP X 359 ALA X 366 1 8 HELIX 16 16 SER X 384 ALA X 396 1 13 HELIX 17 17 THR X 437 ASP X 456 1 20 SHEET 1 A 3 ILE X 19 VAL X 22 0 SHEET 2 A 3 TYR X 114 VAL X 121 -1 O ASN X 115 N GLY X 21 SHEET 3 A 3 GLU X 124 THR X 125 -1 O GLU X 124 N VAL X 121 SHEET 1 B 6 ILE X 19 VAL X 22 0 SHEET 2 B 6 TYR X 114 VAL X 121 -1 O ASN X 115 N GLY X 21 SHEET 3 B 6 SER X 101 LEU X 105 -1 N GLY X 102 O VAL X 120 SHEET 4 B 6 CYS X 50 ARG X 55 1 N GLY X 54 O LEU X 105 SHEET 5 B 6 GLN X 78 MET X 84 1 O SER X 80 N VAL X 53 SHEET 6 B 6 SER X 149 GLN X 152 1 O SER X 149 N VAL X 79 SHEET 1 C 5 CYS X 197 LEU X 202 0 SHEET 2 C 5 MET X 173 ASP X 178 1 N VAL X 175 O SER X 198 SHEET 3 C 5 LEU X 237 PHE X 241 1 O LEU X 239 N ASP X 178 SHEET 4 C 5 VAL X 248 THR X 252 -1 O VAL X 251 N GLY X 238 SHEET 5 C 5 ILE X 257 ILE X 258 -1 O ILE X 258 N VAL X 250 SHEET 1 D 4 ARG X 300 TRP X 304 0 SHEET 2 D 4 ASP X 279 ASP X 283 1 N ILE X 280 O VAL X 302 SHEET 3 D 4 LEU X 322 GLY X 324 1 O LEU X 322 N ILE X 281 SHEET 4 D 4 VAL X 330 PHE X 332 -1 O PHE X 331 N ALA X 323 SHEET 1 E 3 ILE X 371 SER X 372 0 SHEET 2 E 3 VAL X 428 ALA X 435 -1 O ALA X 435 N ILE X 371 SHEET 3 E 3 ILE X 376 THR X 379 -1 N ILE X 376 O LEU X 431 SHEET 1 F 5 ILE X 371 SER X 372 0 SHEET 2 F 5 VAL X 428 ALA X 435 -1 O ALA X 435 N ILE X 371 SHEET 3 F 5 GLY X 416 ALA X 422 -1 N ARG X 421 O VAL X 430 SHEET 4 F 5 VAL X 409 TYR X 413 -1 N TYR X 413 O GLY X 416 SHEET 5 F 5 ASN X 402 THR X 404 -1 N THR X 404 O ARG X 410 SSBOND 1 CYS X 179 CYS X 204 1555 1555 2.83 LINK C GLY X 107 N SEP X 108 1555 1555 1.34 LINK C SEP X 108 N HIS X 109 1555 1555 1.34 LINK O3P SEP X 108 ZN ZN X 500 1555 1555 2.09 LINK OD2 ASP X 242 ZN ZN X 500 1555 1555 1.94 LINK OD2 ASP X 244 ZN ZN X 500 1555 1555 1.98 LINK OD1 ASP X 246 ZN ZN X 500 1555 1555 1.89 CRYST1 70.648 74.186 85.399 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014155 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013480 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011710 0.00000