HEADER OXIDOREDUCTASE 19-MAY-03 1PDB TITLE ANALYSIS OF THREE CRYSTAL STRUCTURE DETERMINATIONS OF A 5-METHYL-6-N- TITLE 2 METHYLANILINO PYRIDOPYRIMIDINE ANTIFOLATE COMPLEX WITH HUMAN TITLE 3 DIHYDROFOLATE REDUCTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIHYDROFOLATE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.5.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DHFR; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS HUMAN DIHYDROFOLATE REDUCTASE INHIBITOR COMPLEXES, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.CODY,J.R.LUFT,W.PANGBORN,A.GANGJEE REVDAT 3 16-AUG-23 1PDB 1 REMARK REVDAT 2 24-FEB-09 1PDB 1 VERSN REVDAT 1 09-DEC-03 1PDB 0 JRNL AUTH V.CODY,J.R.LUFT,W.PANGBORN,A.GANGJEE JRNL TITL ANALYSIS OF THREE CRYSTAL STRUCTURE DETERMINATIONS OF A JRNL TITL 2 5-METHYL-6-N-METHYLANILINO PYRIDOPYRIMIDINE ANTIFOLATE JRNL TITL 3 COMPLEX WITH HUMAN DIHYDROFOLATE REDUCTASE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 59 1603 2003 JRNL REFN ISSN 0907-4449 JRNL PMID 12925791 JRNL DOI 10.1107/S0907444903014963 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.5 REMARK 3 NUMBER OF REFLECTIONS : 8535 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.239 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 9522 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 9522 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1502 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 17 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.025 ; NULL REMARK 3 ANGLE DISTANCE (A) : 0.070 ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.017 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 0.072 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-03. REMARK 100 THE DEPOSITION ID IS D_1000019249. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-SEP-94 REMARK 200 TEMPERATURE (KELVIN) : 298 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8535 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 80.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.20 REMARK 200 COMPLETENESS FOR SHELL (%) : 51.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PROTEIN REMARK 200 STARTING MODEL: PDB ENTRY 1HFP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, 0.1 M PHOSPHATE, PH REMARK 280 8.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.86950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 31.46500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 31.46500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.80425 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 31.46500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 31.46500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 23.93475 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 31.46500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 31.46500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.80425 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 31.46500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 31.46500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 23.93475 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 47.86950 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PHE A 58 NH2 ARG A 65 1.97 REMARK 500 O PRO A 61 N ASN A 64 1.98 REMARK 500 CD2 LEU A 89 NH1 ARG A 91 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY A 17 N GLY A 17 CA 0.110 REMARK 500 ARG A 32 CZ ARG A 32 NH2 0.106 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 3 C - N - CA ANGL. DEV. = 39.9 DEGREES REMARK 500 LEU A 4 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 LEU A 4 O - C - N ANGL. DEV. = -10.5 DEGREES REMARK 500 ASN A 5 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 CYS A 6 CB - CA - C ANGL. DEV. = 7.4 DEGREES REMARK 500 ILE A 7 CG1 - CB - CG2 ANGL. DEV. = 14.6 DEGREES REMARK 500 VAL A 8 CB - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 VAL A 8 CG1 - CB - CG2 ANGL. DEV. = 14.1 DEGREES REMARK 500 ALA A 9 O - C - N ANGL. DEV. = 11.9 DEGREES REMARK 500 VAL A 10 CG1 - CB - CG2 ANGL. DEV. = -18.0 DEGREES REMARK 500 VAL A 10 CA - CB - CG1 ANGL. DEV. = 9.2 DEGREES REMARK 500 ASN A 13 CB - CA - C ANGL. DEV. = 13.3 DEGREES REMARK 500 MET A 14 CB - CG - SD ANGL. DEV. = -18.2 DEGREES REMARK 500 GLY A 15 O - C - N ANGL. DEV. = 12.6 DEGREES REMARK 500 LYS A 18 N - CA - CB ANGL. DEV. = 15.3 DEGREES REMARK 500 ASP A 21 CB - CG - OD2 ANGL. DEV. = -7.5 DEGREES REMARK 500 LEU A 22 CA - CB - CG ANGL. DEV. = 27.3 DEGREES REMARK 500 PRO A 23 N - CD - CG ANGL. DEV. = -10.4 DEGREES REMARK 500 TRP A 24 CE3 - CZ3 - CH2 ANGL. DEV. = -7.7 DEGREES REMARK 500 PRO A 25 CB - CA - C ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 28 CB - CG - CD ANGL. DEV. = 19.8 DEGREES REMARK 500 ARG A 28 CD - NE - CZ ANGL. DEV. = 31.6 DEGREES REMARK 500 ARG A 28 NE - CZ - NH2 ANGL. DEV. = 4.0 DEGREES REMARK 500 GLU A 30 CG - CD - OE1 ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 32 CD - NE - CZ ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG A 32 NE - CZ - NH1 ANGL. DEV. = 10.3 DEGREES REMARK 500 ARG A 32 NE - CZ - NH2 ANGL. DEV. = -8.9 DEGREES REMARK 500 TYR A 33 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 ARG A 36 NH1 - CZ - NH2 ANGL. DEV. = 7.2 DEGREES REMARK 500 ARG A 36 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 36 NE - CZ - NH2 ANGL. DEV. = -11.0 DEGREES REMARK 500 SER A 42 N - CA - C ANGL. DEV. = 19.5 DEGREES REMARK 500 GLU A 44 CB - CG - CD ANGL. DEV. = 20.4 DEGREES REMARK 500 ILE A 51 O - C - N ANGL. DEV. = 9.9 DEGREES REMARK 500 MET A 52 CA - CB - CG ANGL. DEV. = 12.7 DEGREES REMARK 500 GLU A 62 CA - CB - CG ANGL. DEV. = 21.7 DEGREES REMARK 500 ARG A 65 CD - NE - CZ ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 65 NE - CZ - NH2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LYS A 68 CA - C - O ANGL. DEV. = 13.6 DEGREES REMARK 500 ARG A 70 CD - NE - CZ ANGL. DEV. = 9.0 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 4.0 DEGREES REMARK 500 ASN A 72 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 ASN A 72 CA - CB - CG ANGL. DEV. = 29.3 DEGREES REMARK 500 LEU A 73 C - N - CA ANGL. DEV. = 17.2 DEGREES REMARK 500 VAL A 74 CA - C - O ANGL. DEV. = 13.3 DEGREES REMARK 500 VAL A 74 O - C - N ANGL. DEV. = -11.5 DEGREES REMARK 500 SER A 76 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 77 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 GLU A 78 CG - CD - OE2 ANGL. DEV. = -12.8 DEGREES REMARK 500 GLU A 81 N - CA - C ANGL. DEV. = 23.7 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 115 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 3 87.09 -34.84 REMARK 500 LYS A 18 114.99 -161.33 REMARK 500 THR A 40 107.72 -31.92 REMARK 500 GLU A 44 29.61 -64.13 REMARK 500 SER A 59 -17.30 -46.65 REMARK 500 PRO A 83 157.93 -48.55 REMARK 500 LYS A 108 -70.39 -109.46 REMARK 500 ASP A 110 -81.74 -108.12 REMARK 500 SER A 118 -48.81 -22.07 REMARK 500 GLN A 140 128.81 173.82 REMARK 500 ASP A 152 91.43 -52.14 REMARK 500 LEU A 153 4.61 -66.80 REMARK 500 GLU A 161 171.23 175.70 REMARK 500 ASP A 168 144.45 -32.08 REMARK 500 GLU A 171 118.54 -168.07 REMARK 500 GLU A 183 149.87 -170.47 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 32 0.15 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PD8 RELATED DB: PDB REMARK 900 RELATED ID: 1PD9 RELATED DB: PDB DBREF 1PDB A 1 186 UNP P00374 DYR_HUMAN 1 186 SEQRES 1 A 186 VAL GLY SER LEU ASN CYS ILE VAL ALA VAL SER GLN ASN SEQRES 2 A 186 MET GLY ILE GLY LYS ASN GLY ASP LEU PRO TRP PRO PRO SEQRES 3 A 186 LEU ARG ASN GLU PHE ARG TYR PHE GLN ARG MET THR THR SEQRES 4 A 186 THR SER SER VAL GLU GLY LYS GLN ASN LEU VAL ILE MET SEQRES 5 A 186 GLY LYS LYS THR TRP PHE SER ILE PRO GLU LYS ASN ARG SEQRES 6 A 186 PRO LEU LYS GLY ARG ILE ASN LEU VAL LEU SER ARG GLU SEQRES 7 A 186 LEU LYS GLU PRO PRO GLN GLY ALA HIS PHE LEU SER ARG SEQRES 8 A 186 SER LEU ASP ASP ALA LEU LYS LEU THR GLU GLN PRO GLU SEQRES 9 A 186 LEU ALA ASN LYS VAL ASP MET VAL TRP ILE VAL GLY GLY SEQRES 10 A 186 SER SER VAL TYR LYS GLU ALA MET ASN HIS PRO GLY HIS SEQRES 11 A 186 LEU LYS LEU PHE VAL THR ARG ILE MET GLN ASP PHE GLU SEQRES 12 A 186 SER ASP THR PHE PHE PRO GLU ILE ASP LEU GLU LYS TYR SEQRES 13 A 186 LYS LEU LEU PRO GLU TYR PRO GLY VAL LEU SER ASP VAL SEQRES 14 A 186 GLN GLU GLU LYS GLY ILE LYS TYR LYS PHE GLU VAL TYR SEQRES 15 A 186 GLU LYS ASN ASP FORMUL 2 HOH *17(H2 O) HELIX 1 1 LEU A 27 THR A 40 1 14 HELIX 2 2 LYS A 54 SER A 59 1 6 HELIX 3 3 PRO A 61 ARG A 65 5 5 HELIX 4 4 SER A 92 LEU A 99 1 8 HELIX 5 5 GLY A 117 HIS A 127 1 11 SHEET 1 A 8 PHE A 88 SER A 90 0 SHEET 2 A 8 ILE A 71 LEU A 75 1 N VAL A 74 O PHE A 88 SHEET 3 A 8 GLN A 47 GLY A 53 1 N VAL A 50 O LEU A 73 SHEET 4 A 8 VAL A 109 GLY A 116 1 O VAL A 115 N ILE A 51 SHEET 5 A 8 LEU A 4 VAL A 10 1 N ASN A 5 O VAL A 112 SHEET 6 A 8 GLY A 129 ILE A 138 1 O PHE A 134 N CYS A 6 SHEET 7 A 8 ILE A 175 ASP A 186 -1 O GLU A 180 N VAL A 135 SHEET 8 A 8 LYS A 157 LEU A 159 -1 N LEU A 159 O VAL A 181 SHEET 1 B 8 PHE A 88 SER A 90 0 SHEET 2 B 8 ILE A 71 LEU A 75 1 N VAL A 74 O PHE A 88 SHEET 3 B 8 GLN A 47 GLY A 53 1 N VAL A 50 O LEU A 73 SHEET 4 B 8 VAL A 109 GLY A 116 1 O VAL A 115 N ILE A 51 SHEET 5 B 8 LEU A 4 VAL A 10 1 N ASN A 5 O VAL A 112 SHEET 6 B 8 GLY A 129 ILE A 138 1 O PHE A 134 N CYS A 6 SHEET 7 B 8 ILE A 175 ASP A 186 -1 O GLU A 180 N VAL A 135 SHEET 8 B 8 GLN A 170 GLU A 172 -1 N GLN A 170 O TYR A 177 SHEET 1 C 2 GLY A 15 GLY A 17 0 SHEET 2 C 2 THR A 146 PHE A 147 -1 N THR A 146 O GLY A 17 CISPEP 1 ARG A 65 PRO A 66 0 -1.51 CISPEP 2 GLY A 116 GLY A 117 0 -1.65 CRYST1 62.930 62.930 95.739 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015891 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010445 0.00000