HEADER HYDROLASE/HYDROLASE INHIBITOR 19-JUL-95 1PFX TITLE PORCINE FACTOR IXA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FACTOR IXA; COMPND 3 CHAIN: C; COMPND 4 SYNONYM: CHRISTMAS FACTOR; COMPND 5 EC: 3.4.21.22; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: FACTOR IXA; COMPND 9 CHAIN: L; COMPND 10 SYNONYM: CHRISTMAS FACTOR; COMPND 11 EC: 3.4.21.22; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 3 ORGANISM_COMMON: PIG; SOURCE 4 ORGANISM_TAXID: 9823; SOURCE 5 ORGAN: BLOOD; SOURCE 6 GENE: PETE; SOURCE 7 MOL_ID: 2; SOURCE 8 ORGANISM_SCIENTIFIC: SUS SCROFA; SOURCE 9 ORGANISM_COMMON: PIG; SOURCE 10 ORGANISM_TAXID: 9823; SOURCE 11 ORGAN: BLOOD; SOURCE 12 GENE: PETE KEYWDS HEMOPHILIA/EGF, BLOOD COAGULATION, PLASMA, SERINE PROTEASE, CALCIUM- KEYWDS 2 BINDING, HYDROLASE, GLYCOPROTEIN, HYDROLASE-HYDROLASE INHIBITOR KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR H.BRANDSTETTER,M.BAUER,R.HUBER,P.LOLLAR,W.BODE REVDAT 4 20-JUN-12 1PFX 1 HETNAM REVDAT 3 13-JUL-11 1PFX 1 VERSN REVDAT 2 24-FEB-09 1PFX 1 VERSN REVDAT 1 17-AUG-96 1PFX 0 JRNL AUTH H.BRANDSTETTER,M.BAUER,R.HUBER,P.LOLLAR,W.BODE JRNL TITL X-RAY STRUCTURE OF CLOTTING FACTOR IXA: ACTIVE SITE AND JRNL TITL 2 MODULE STRUCTURE RELATED TO XASE ACTIVITY AND HEMOPHILIA B. JRNL REF PROC.NATL.ACAD.SCI.USA V. 92 9796 1995 JRNL REFN ISSN 0027-8424 JRNL PMID 7568220 JRNL DOI 10.1073/PNAS.92.21.9796 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 10693 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.198 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3015 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 2.01 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.87 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.64 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PFX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-94 REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 10693 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 8.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 89.2 REMARK 200 DATA REDUNDANCY : 1.800 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.60000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 64.37500 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 64.37500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.30000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 64.37500 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 64.37500 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 57.90000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 64.37500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 64.37500 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.30000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 64.37500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 64.37500 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 57.90000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 38.60000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, L REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 DUE TO THE LACK OF CALCIUM IN THE CRYSTALS, GLA DOMAIN REMARK 400 (1-46) IS MAINLY DISORDERED. BACKBONE OF C-TERMINAL REMARK 400 "HYDROPHOBIC HELIX" OF THE GLA MODULE (35 - 46) IS REMARK 400 IDENTIFIED BY CYLINDRICAL ELECTRON DENSITY; AZIMUTHAL REMARK 400 ORIENTATION IS CONSISTENT WITH CRYSTAL PACKING. REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 TYR L 1 REMARK 475 ASN L 2 REMARK 475 SER L 3 REMARK 475 GLY L 4 REMARK 475 LYS L 5 REMARK 475 LEU L 6 REMARK 475 CGU L 7 REMARK 475 CGU L 8 REMARK 475 PHE L 9 REMARK 475 VAL L 10 REMARK 475 ARG L 11 REMARK 475 GLY L 12 REMARK 475 ASN L 13 REMARK 475 LEU L 14 REMARK 475 CGU L 15 REMARK 475 ARG L 16 REMARK 475 CGU L 17 REMARK 475 CYS L 18 REMARK 475 ILE L 19 REMARK 475 CGU L 20 REMARK 475 CGU L 21 REMARK 475 LYS L 22 REMARK 475 CYS L 23 REMARK 475 SER L 24 REMARK 475 PHE L 25 REMARK 475 CGU L 26 REMARK 475 CGU L 27 REMARK 475 ALA L 28 REMARK 475 ARG L 29 REMARK 475 CGU L 30 REMARK 475 VAL L 31 REMARK 475 PHE L 32 REMARK 475 CGU L 33 REMARK 475 ASN L 34 REMARK 475 THR L 35 REMARK 475 CGU L 36 REMARK 475 LYS L 37 REMARK 475 THR L 38 REMARK 475 ASN L 39 REMARK 475 CGU L 40 REMARK 475 PHE L 41 REMARK 475 TRP L 42 REMARK 475 LYS L 43 REMARK 475 GLN L 44 REMARK 475 TYR L 45 REMARK 475 VAL L 46 REMARK 475 ASP L 47 REMARK 475 GLY L 48 REMARK 475 ASP L 49 REMARK 475 SER L 138 REMARK 475 HIS L 139 REMARK 475 SER L 140 REMARK 475 PRO L 141 REMARK 475 THR L 142 REMARK 475 THR L 143 REMARK 475 LEU L 144 REMARK 475 THR L 145 REMARK 475 ARG L 146 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU C 77 CG CD OE1 OE2 REMARK 480 ARG C 148 CG CD NE CZ NH1 NH2 REMARK 480 ARG C 233 CG CD NE CZ NH1 NH2 REMARK 480 GLU C 240 CG CD OE1 OE2 REMARK 480 LYS C 243 CG CD CE NZ REMARK 480 THR C 245 C O CB OG1 CG2 OXT REMARK 480 GLU L 52 CG CD OE1 OE2 REMARK 480 LYS L 100 CG CD CE NZ REMARK 480 LYS L 106 CG CD CE NZ REMARK 480 VAL L 137 C O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 HIS C 57 C2 0G6 C 301 1.50 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 ND2 ASN C 129A NE2 GLN L 44 7558 2.14 REMARK 500 OD2 ASP L 47 O1 0G6 C 301 6577 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP L 42 CE2 TRP L 42 CD2 -0.074 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 29 NE - CZ - NH1 ANGL. DEV. = -3.7 DEGREES REMARK 500 TRP L 42 CA - CB - CG ANGL. DEV. = -17.7 DEGREES REMARK 500 TRP L 42 CB - CG - CD1 ANGL. DEV. = -12.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE C 38 -14.36 81.70 REMARK 500 ASP C 39 172.71 73.68 REMARK 500 ALA C 40 43.00 28.31 REMARK 500 GLU C 49 -37.62 -24.37 REMARK 500 HIS C 57 14.96 -67.71 REMARK 500 VAL C 67 65.52 -118.93 REMARK 500 TYR C 71 -77.69 -144.39 REMARK 500 SER C 93 48.37 -92.71 REMARK 500 TYR C 94 -89.00 -65.15 REMARK 500 THR C 95B 55.91 162.61 REMARK 500 ASN C 97 97.82 -33.44 REMARK 500 LYS C 98 26.18 -66.91 REMARK 500 TYR C 99 14.07 -142.93 REMARK 500 SER C 100 -97.45 -64.02 REMARK 500 HIS C 101 42.86 -79.80 REMARK 500 ASP C 102 74.53 -58.22 REMARK 500 GLU C 127 -70.19 -49.34 REMARK 500 ASN C 147 97.28 -56.25 REMARK 500 LEU C 155 124.08 -39.62 REMARK 500 ALA C 183 127.83 -172.88 REMARK 500 ASP C 189 170.32 179.70 REMARK 500 ASP C 194 -22.86 -162.95 REMARK 500 GLU C 204 70.17 59.74 REMARK 500 SER C 214 -74.08 -94.87 REMARK 500 GLU C 219 -162.17 58.68 REMARK 500 ASN L 2 69.73 64.49 REMARK 500 SER L 3 0.98 -161.01 REMARK 500 LYS L 5 95.80 -166.21 REMARK 500 LEU L 6 60.67 64.49 REMARK 500 PHE L 9 0.94 -67.14 REMARK 500 ARG L 16 -73.08 -72.20 REMARK 500 CGU L 20 -94.39 -73.71 REMARK 500 CGU L 21 -84.93 -69.36 REMARK 500 LYS L 22 129.34 -175.95 REMARK 500 CGU L 33 -80.17 75.35 REMARK 500 CGU L 36 -73.37 -43.71 REMARK 500 LYS L 43 -8.95 -55.23 REMARK 500 VAL L 46 -83.72 -133.39 REMARK 500 ASP L 49 103.14 -40.22 REMARK 500 PRO L 53 67.29 25.77 REMARK 500 ASN L 54 100.43 2.69 REMARK 500 SER L 68 -151.72 -98.55 REMARK 500 GLN L 74 -103.13 59.38 REMARK 500 LYS L 80 -13.77 -47.75 REMARK 500 CYS L 88 -10.29 -49.11 REMARK 500 ASN L 92 15.80 46.35 REMARK 500 ARG L 94 -4.34 80.41 REMARK 500 GLN L 97 -96.25 -130.17 REMARK 500 ALA L 103 -8.13 61.72 REMARK 500 ASP L 104 -133.98 -170.15 REMARK 500 REMARK 500 THIS ENTRY HAS 56 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE L 19 CGU L 20 142.21 REMARK 500 THR L 35 CGU L 36 132.84 REMARK 500 ASP L 47 GLY L 48 -146.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR L 45 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ILE L 19 -12.58 REMARK 500 CGU L 20 12.76 REMARK 500 PHE L 32 -12.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 CYS L 88 24.4 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 0G6 C 301 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 0G6 C 301 REMARK 630 REMARK 630 MOLECULE TYPE: NULL REMARK 630 MOLECULE NAME: D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO)METHYL] REMARK 630 AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L-PROLINAMIDE REMARK 630 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 630 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 630 REMARK 630 M RES C SSSEQI REMARK 630 0G6 C 301 REMARK 630 SOURCE: NULL REMARK 630 TAXONOMY: NULL REMARK 630 SUBCOMP: DPN PRO AR7 0QE REMARK 630 DETAILS: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 0G6 C 301 DBREF 1PFX C 16 237 UNP P16293 FA9_PIG 183 409 DBREF 1PFX L 7 146 UNP P16293 FA9_PIG 8 147 SEQADV 1PFX PHE C 174 UNP P16293 VAL 206 CONFLICT SEQADV 1PFX GLN C 192 UNP P16293 LEU 226 CONFLICT SEQRES 1 C 235 ILE VAL GLY GLY GLU ASN ALA LYS PRO GLY GLN PHE PRO SEQRES 2 C 235 TRP GLN VAL LEU LEU ASN GLY LYS ILE ASP ALA PHE CYS SEQRES 3 C 235 GLY GLY SER ILE ILE ASN GLU LYS TRP VAL VAL THR ALA SEQRES 4 C 235 ALA HIS CYS ILE GLU PRO GLY VAL LYS ILE THR VAL VAL SEQRES 5 C 235 ALA GLY GLU TYR ASN THR GLU GLU THR GLU PRO THR GLU SEQRES 6 C 235 GLN ARG ARG ASN VAL ILE ARG ALA ILE PRO HIS HIS SER SEQRES 7 C 235 TYR ASN ALA THR VAL ASN LYS TYR SER HIS ASP ILE ALA SEQRES 8 C 235 LEU LEU GLU LEU ASP GLU PRO LEU THR LEU ASN SER TYR SEQRES 9 C 235 VAL THR PRO ILE CYS ILE ALA ASP LYS GLU TYR THR ASN SEQRES 10 C 235 ILE PHE LEU LYS PHE GLY SER GLY TYR VAL SER GLY TRP SEQRES 11 C 235 GLY ARG VAL PHE ASN ARG GLY ARG SER ALA THR ILE LEU SEQRES 12 C 235 GLN TYR LEU LYS VAL PRO LEU VAL ASP ARG ALA THR CYS SEQRES 13 C 235 LEU ARG SER THR LYS PHE THR ILE TYR SER ASN MET PHE SEQRES 14 C 235 CYS ALA GLY PHE HIS GLU GLY GLY LYS ASP SER CYS GLN SEQRES 15 C 235 GLY ASP SER GLY GLY PRO HIS VAL THR GLU VAL GLU GLY SEQRES 16 C 235 THR SER PHE LEU THR GLY ILE ILE SER TRP GLY GLU GLU SEQRES 17 C 235 CYS ALA VAL LYS GLY LYS TYR GLY ILE TYR THR LYS VAL SEQRES 18 C 235 SER ARG TYR VAL ASN TRP ILE LYS GLU LYS THR LYS LEU SEQRES 19 C 235 THR SEQRES 1 L 146 TYR ASN SER GLY LYS LEU CGU CGU PHE VAL ARG GLY ASN SEQRES 2 L 146 LEU CGU ARG CGU CYS ILE CGU CGU LYS CYS SER PHE CGU SEQRES 3 L 146 CGU ALA ARG CGU VAL PHE CGU ASN THR CGU LYS THR ASN SEQRES 4 L 146 CGU PHE TRP LYS GLN TYR VAL ASP GLY ASP GLN CYS GLU SEQRES 5 L 146 PRO ASN PRO CYS LEU ASN GLY GLY LEU CYS LYS BHD ASP SEQRES 6 L 146 ILE ASN SER TYR GLU CYS TRP CYS GLN VAL GLY PHE GLU SEQRES 7 L 146 GLY LYS ASN CYS GLU LEU ASP ALA THR CYS ASN ILE LYS SEQRES 8 L 146 ASN GLY ARG CYS LYS GLN PHE CYS LYS THR GLY ALA ASP SEQRES 9 L 146 SER LYS VAL LEU CYS SER CYS THR THR GLY TYR ARG LEU SEQRES 10 L 146 ALA PRO ASP GLN LYS SER CYS LYS PRO ALA VAL PRO PHE SEQRES 11 L 146 PRO CYS GLY ARG VAL SER VAL SER HIS SER PRO THR THR SEQRES 12 L 146 LEU THR ARG MODRES 1PFX CGU L 7 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 8 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 15 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 17 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 20 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 21 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 26 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 27 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 30 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 33 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 36 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX CGU L 40 GLU GAMMA-CARBOXY-GLUTAMIC ACID MODRES 1PFX BHD L 64 ASP (3S)-3-HYDROXY-L-ASPARTIC ACID HET CGU L 7 13 HET CGU L 8 13 HET CGU L 15 13 HET CGU L 17 13 HET CGU L 20 13 HET CGU L 21 13 HET CGU L 26 13 HET CGU L 27 13 HET CGU L 30 13 HET CGU L 33 13 HET CGU L 36 13 HET CGU L 40 13 HET BHD L 64 11 HET 0G6 C 301 40 HETNAM CGU GAMMA-CARBOXY-GLUTAMIC ACID HETNAM BHD (3S)-3-HYDROXY-L-ASPARTIC ACID HETNAM 0G6 D-PHENYLALANYL-N-[(2S,3S)-6-{[AMINO(IMINIO) HETNAM 2 0G6 METHYL]AMINO}-1-CHLORO-2-HYDROXYHEXAN-3-YL]-L- HETNAM 3 0G6 PROLINAMIDE HETSYN BHD BETA-HYDROXYASPARTIC ACID HETSYN 0G6 PPACK FORMUL 2 CGU 12(C6 H9 N O6) FORMUL 2 BHD C4 H7 N O5 FORMUL 3 0G6 C21 H34 CL N6 O3 1+ HELIX 1 1 ALA C 55 ILE C 59 5 5 HELIX 2 2 ASP C 125 LYS C 132 1 10 HELIX 3 3 ASP C 164 THR C 172 1 9 HELIX 4 4 LYS C 230 THR C 242 1 13 HELIX 5 5 ASN L 13 CYS L 18 1 6 HELIX 6 6 SER L 24 CGU L 33 1 10 HELIX 7 7 THR L 35 GLN L 44 1 10 HELIX 8 8 ILE L 90 CYS L 95 5 6 HELIX 9 9 VAL L 135 SER L 140 1 6 SHEET 1 A 5 GLU C 20 ASN C 21 0 SHEET 2 A 5 GLN C 156 VAL C 163 -1 O TYR C 157 N GLU C 20 SHEET 3 A 5 SER C 135 GLY C 140 -1 N GLY C 136 O VAL C 160 SHEET 4 A 5 HIS C 199 VAL C 203 -1 O VAL C 200 N TYR C 137 SHEET 5 A 5 THR C 206 LEU C 209 -1 O PHE C 208 N THR C 201 SHEET 1 B 5 GLU C 20 ASN C 21 0 SHEET 2 B 5 GLN C 156 VAL C 163 -1 O TYR C 157 N GLU C 20 SHEET 3 B 5 MET C 180 ALA C 183 -1 O CYS C 182 N VAL C 163 SHEET 4 B 5 GLY C 226 THR C 229 -1 O TYR C 228 N PHE C 181 SHEET 5 B 5 ILE C 212 TRP C 215 -1 N ILE C 212 O THR C 229 SHEET 1 C 7 GLN C 30 ASN C 34 0 SHEET 2 C 7 CYS C 42 ASN C 48 -1 O CYS C 42 N LEU C 33 SHEET 3 C 7 TRP C 51 THR C 54 -1 O VAL C 53 N SER C 45 SHEET 4 C 7 ALA C 104 LEU C 108 -1 O ALA C 104 N THR C 54 SHEET 5 C 7 GLN C 81 PRO C 90 -1 N ILE C 86 O GLU C 107 SHEET 6 C 7 THR C 65 ALA C 68 -1 N ALA C 68 O GLN C 81 SHEET 7 C 7 GLN C 30 ASN C 34 -1 N ASN C 34 O THR C 65 SHEET 1 D 2 LEU L 61 BHD L 64 0 SHEET 2 D 2 TYR L 69 TRP L 72 -1 O TRP L 72 N LEU L 61 SHEET 1 E 2 PHE L 77 GLU L 78 0 SHEET 2 E 2 LEU L 84 ASP L 85 -1 O LEU L 84 N GLU L 78 SHEET 1 F 2 PHE L 98 CYS L 99 0 SHEET 2 F 2 CYS L 109 SER L 110 -1 O SER L 110 N PHE L 98 SHEET 1 G 2 TYR L 115 LEU L 117 0 SHEET 2 G 2 CYS L 124 PRO L 126 -1 O LYS L 125 N ARG L 116 SSBOND 1 CYS C 42 CYS C 58 1555 1555 2.03 SSBOND 2 CYS C 122 CYS L 132 1555 1555 2.04 SSBOND 3 CYS C 168 CYS C 182 1555 1555 2.02 SSBOND 4 CYS C 191 CYS C 220 1555 1555 2.04 SSBOND 5 CYS L 18 CYS L 23 1555 1555 2.02 SSBOND 6 CYS L 51 CYS L 62 1555 1555 2.02 SSBOND 7 CYS L 56 CYS L 71 1555 1555 2.02 SSBOND 8 CYS L 73 CYS L 82 1555 1555 2.03 SSBOND 9 CYS L 88 CYS L 99 1555 1555 2.03 SSBOND 10 CYS L 95 CYS L 109 1555 1555 2.02 SSBOND 11 CYS L 111 CYS L 124 1555 1555 2.04 LINK C CGU L 8 N PHE L 9 1555 1555 1.33 LINK C CGU L 15 N ARG L 16 1555 1555 1.33 LINK C CGU L 17 N CYS L 18 1555 1555 1.33 LINK C CGU L 21 N LYS L 22 1555 1555 1.34 LINK C CGU L 27 N ALA L 28 1555 1555 1.33 LINK C CGU L 30 N VAL L 31 1555 1555 1.33 LINK C CGU L 33 N ASN L 34 1555 1555 1.34 LINK C CGU L 36 N LYS L 37 1555 1555 1.33 LINK C CGU L 40 N PHE L 41 1555 1555 1.34 LINK C LYS L 63 N BHD L 64 1555 1555 1.34 LINK C BHD L 64 N ASP L 65 1555 1555 1.34 LINK C2 A0G6 C 301 OG SER C 195 1555 1555 1.41 CISPEP 1 SER L 140 PRO L 141 0 -0.16 SITE 1 AC1 14 HIS C 57 TYR C 99 PHE C 174 ASP C 189 SITE 2 AC1 14 SER C 190 CYS C 191 GLN C 192 GLY C 193 SITE 3 AC1 14 SER C 195 SER C 214 TRP C 215 GLY C 216 SITE 4 AC1 14 GLU C 219 ILE L 66 CRYST1 128.750 128.750 77.200 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007767 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007767 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012953 0.00000