data_1PJG # _entry.id 1PJG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1PJG pdb_00001pjg 10.2210/pdb1pjg/pdb NDB UH0005 ? ? RCSB RCSB019361 ? ? WWPDB D_1000019361 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2003-12-09 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-14 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_alt_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 17 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 18 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 19 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 20 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 21 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 22 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 23 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 24 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 25 4 'Structure model' '_pdbx_struct_conn_angle.value' 26 4 'Structure model' '_struct_conn.pdbx_dist_value' 27 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 28 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 29 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 31 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 33 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 34 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 35 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 36 4 'Structure model' '_struct_conn.ptnr1_symmetry' 37 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 38 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 40 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 41 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 42 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 43 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' 44 4 'Structure model' '_struct_conn.ptnr2_symmetry' 45 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 46 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 47 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PJG _pdbx_database_status.recvd_initial_deposition_date 2003-06-02 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB AH0012 'Same sequence and crystal, solved by Direct Methods' unspecified PDB 1JB8 'Same sequence crystallized in different space group with different packing' unspecified NDB UH0006 'Same sequence, MgOAc in the crystallization batch' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kopka, M.L.' 1 'Lavelle, L.' 2 'Han, G.W.' 3 'Ng, H.-L.' 4 'Dickerson, R.E.' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'An unusual sugar conformation in the structure of an RNA/DNA decamer of the polypurine tract may affect recognition by RNase H.' J.Mol.Biol. 334 653 665 2003 JMOBAK UK 0022-2836 0070 ? 14636594 10.1016/j.jmb.2003.09.057 1 'Direct Methods Determination of an RNA/DNA Hybrid Decamer at 1.15A Resolution' 'Acta Crystallogr.,Sect.D' 57 213 218 2001 ABCRE6 DK 0907-4449 0766 ? ? 10.1107/S0907444900017595 2 ;Crystal Structure of an RNA/DNA Hybrid Reveals Novel Intermolecular Intercalation: Dimer Formation by Base-pair Swapping ; 'To be Published' ? ? ? 2003 ? ? ? 0353 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kopka, M.L.' 1 ? primary 'Lavelle, L.' 2 ? primary 'Han, G.W.' 3 ? primary 'Ng, H.L.' 4 ? primary 'Dickerson, R.E.' 5 ? 1 'Han, G.W.' 6 ? 2 'Han, G.W.' 7 ? 2 'Kopka, M.L.' 8 ? 2 'Langs, D.' 9 ? 2 'Sawaya, M.R.' 10 ? 2 'Dickerson, R.E.' 11 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3'" 3255.076 1 ? ? 'Polypurine Tract of HIV-1' ? 2 polymer syn "5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3'" 2991.961 1 ? ? ? ? 3 non-polymer syn 'CALCIUM ION' 40.078 4 ? ? ? ? 4 water nat water 18.015 124 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CAAAGAAAAG CAAAGAAAAG A ? 2 polydeoxyribonucleotide no no '(DC)(DT)(DT)(DT)(DT)(DC)(DT)(DT)(DT)(DG)' CTTTTCTTTG B ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'CALCIUM ION' CA 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 A n 1 3 A n 1 4 A n 1 5 G n 1 6 A n 1 7 A n 1 8 A n 1 9 A n 1 10 G n 2 1 DC n 2 2 DT n 2 3 DT n 2 4 DT n 2 5 DT n 2 6 DC n 2 7 DT n 2 8 DT n 2 9 DT n 2 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CA non-polymer . 'CALCIUM ION' ? 'Ca 2' 40.078 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 1 1 C C A . n A 1 2 A 2 2 2 A A A . n A 1 3 A 3 3 3 A A A . n A 1 4 A 4 4 4 A A A . n A 1 5 G 5 5 5 G G A . n A 1 6 A 6 6 6 A A A . n A 1 7 A 7 7 7 A A A . n A 1 8 A 8 8 8 A A A . n A 1 9 A 9 9 9 A A A . n A 1 10 G 10 10 10 G G A . n B 2 1 DC 1 11 11 DC C B . n B 2 2 DT 2 12 12 DT T B . n B 2 3 DT 3 13 13 DT T B . n B 2 4 DT 4 14 14 DT T B . n B 2 5 DT 5 15 15 DT T B . n B 2 6 DC 6 16 16 DC C B . n B 2 7 DT 7 17 17 DT T B . n B 2 8 DT 8 18 18 DT T B . n B 2 9 DT 9 19 19 DT T B . n B 2 10 DG 10 20 20 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 CA 1 32 32 CA OC6 A . D 3 CA 1 33 33 CA OC5 A . E 3 CA 1 31 31 CA OC4 B . F 3 CA 1 34 34 CA OC4 B . G 4 HOH 1 27 27 HOH HOH A . G 4 HOH 2 28 28 HOH HOH A . G 4 HOH 3 37 37 HOH HOH A . G 4 HOH 4 40 40 HOH HOH A . G 4 HOH 5 41 41 HOH HOH A . G 4 HOH 6 44 44 HOH HOH A . G 4 HOH 7 45 45 HOH HOH A . G 4 HOH 8 46 46 HOH HOH A . G 4 HOH 9 49 49 HOH HOH A . G 4 HOH 10 51 51 HOH HOH A . G 4 HOH 11 52 52 HOH HOH A . G 4 HOH 12 53 53 HOH HOH A . G 4 HOH 13 54 54 HOH HOH A . G 4 HOH 14 56 56 HOH HOH A . G 4 HOH 15 57 57 HOH HOH A . G 4 HOH 16 58 58 HOH HOH A . G 4 HOH 17 60 60 HOH HOH A . G 4 HOH 18 62 62 HOH HOH A . G 4 HOH 19 63 63 HOH HOH A . G 4 HOH 20 65 65 HOH HOH A . G 4 HOH 21 66 66 HOH HOH A . G 4 HOH 22 68 68 HOH HOH A . G 4 HOH 23 70 70 HOH HOH A . G 4 HOH 24 71 71 HOH HOH A . G 4 HOH 25 72 72 HOH HOH A . G 4 HOH 26 73 73 HOH HOH A . G 4 HOH 27 76 76 HOH HOH A . G 4 HOH 28 77 77 HOH HOH A . G 4 HOH 29 78 78 HOH HOH A . G 4 HOH 30 83 83 HOH HOH A . G 4 HOH 31 84 84 HOH HOH A . G 4 HOH 32 85 85 HOH HOH A . G 4 HOH 33 86 86 HOH HOH A . G 4 HOH 34 88 88 HOH HOH A . G 4 HOH 35 94 94 HOH HOH A . G 4 HOH 36 98 98 HOH HOH A . G 4 HOH 37 103 103 HOH HOH A . G 4 HOH 38 106 106 HOH HOH A . G 4 HOH 39 107 107 HOH HOH A . G 4 HOH 40 109 109 HOH HOH A . G 4 HOH 41 111 111 HOH HOH A . G 4 HOH 42 114 114 HOH HOH A . G 4 HOH 43 116 116 HOH HOH A . G 4 HOH 44 117 117 HOH HOH A . G 4 HOH 45 118 118 HOH HOH A . G 4 HOH 46 120 120 HOH HOH A . G 4 HOH 47 121 121 HOH HOH A . G 4 HOH 48 122 122 HOH HOH A . G 4 HOH 49 126 126 HOH HOH A . G 4 HOH 50 127 127 HOH HOH A . G 4 HOH 51 128 128 HOH HOH A . G 4 HOH 52 130 130 HOH HOH A . G 4 HOH 53 131 131 HOH HOH A . G 4 HOH 54 132 132 HOH HOH A . G 4 HOH 55 133 133 HOH HOH A . G 4 HOH 56 138 32 HOH OC6 A . G 4 HOH 57 139 32 HOH OC6 A . G 4 HOH 58 140 32 HOH OC6 A . G 4 HOH 59 141 32 HOH OC6 A . G 4 HOH 60 142 32 HOH OC6 A . G 4 HOH 61 143 32 HOH OC6 A . G 4 HOH 62 144 33 HOH OC5 A . G 4 HOH 63 145 33 HOH OC5 A . G 4 HOH 64 146 33 HOH OC5 A . G 4 HOH 65 147 33 HOH OC5 A . G 4 HOH 66 148 33 HOH OC5 A . H 4 HOH 1 25 25 HOH HOH B . H 4 HOH 2 26 26 HOH HOH B . H 4 HOH 3 29 29 HOH HOH B . H 4 HOH 4 30 30 HOH HOH B . H 4 HOH 5 35 35 HOH HOH B . H 4 HOH 6 36 36 HOH HOH B . H 4 HOH 7 38 38 HOH HOH B . H 4 HOH 8 39 39 HOH HOH B . H 4 HOH 9 42 42 HOH HOH B . H 4 HOH 10 43 43 HOH HOH B . H 4 HOH 11 47 47 HOH HOH B . H 4 HOH 12 48 48 HOH HOH B . H 4 HOH 13 50 50 HOH HOH B . H 4 HOH 14 55 55 HOH HOH B . H 4 HOH 15 59 59 HOH HOH B . H 4 HOH 16 61 61 HOH HOH B . H 4 HOH 17 64 64 HOH HOH B . H 4 HOH 18 67 67 HOH HOH B . H 4 HOH 19 69 69 HOH HOH B . H 4 HOH 20 74 74 HOH HOH B . H 4 HOH 21 75 75 HOH HOH B . H 4 HOH 22 79 79 HOH HOH B . H 4 HOH 23 80 80 HOH HOH B . H 4 HOH 24 81 81 HOH HOH B . H 4 HOH 25 82 82 HOH HOH B . H 4 HOH 26 87 87 HOH HOH B . H 4 HOH 27 89 89 HOH HOH B . H 4 HOH 28 90 90 HOH HOH B . H 4 HOH 29 91 91 HOH HOH B . H 4 HOH 30 92 92 HOH HOH B . H 4 HOH 31 93 93 HOH HOH B . H 4 HOH 32 95 95 HOH HOH B . H 4 HOH 33 96 96 HOH HOH B . H 4 HOH 34 97 97 HOH HOH B . H 4 HOH 35 99 99 HOH HOH B . H 4 HOH 36 100 100 HOH HOH B . H 4 HOH 37 101 101 HOH HOH B . H 4 HOH 38 102 102 HOH HOH B . H 4 HOH 39 104 104 HOH HOH B . H 4 HOH 40 105 105 HOH HOH B . H 4 HOH 41 108 108 HOH HOH B . H 4 HOH 42 110 110 HOH HOH B . H 4 HOH 43 112 112 HOH HOH B . H 4 HOH 44 113 113 HOH HOH B . H 4 HOH 45 115 115 HOH HOH B . H 4 HOH 46 119 119 HOH HOH B . H 4 HOH 47 123 123 HOH HOH B . H 4 HOH 48 124 124 HOH HOH B . H 4 HOH 49 125 125 HOH HOH B . H 4 HOH 50 129 129 HOH HOH B . H 4 HOH 51 134 31 HOH OC4 B . H 4 HOH 52 135 31 HOH OC4 B . H 4 HOH 53 136 31 HOH OC4 B . H 4 HOH 54 137 31 HOH OC4 B . H 4 HOH 55 149 34 HOH OC4 B . H 4 HOH 56 150 34 HOH OC4 B . H 4 HOH 57 151 34 HOH OC4 B . H 4 HOH 58 152 34 HOH OC4 B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' 'Quantum 4' ? 1 SCALEPACK 'data scaling' . ? 2 EPMR phasing . ? 3 SHELXL-97 refinement . ? 4 DENZO 'data reduction' . ? 5 # _cell.entry_id 1PJG _cell.length_a 25.701 _cell.length_b 41.073 _cell.length_c 46.116 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1PJG _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1PJG _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.38 _exptl_crystal.description ? _exptl_crystal.density_Matthews 1.93 _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 278 _exptl_crystal_grow.pH 6.8 _exptl_crystal_grow.pdbx_details ;calcium acetate, cacodylate, beta-octylglucoside, spermidine hydrochloride, 2-methyl,2,4-pentanediol, pH 6.8, VAPOR DIFFUSION, HANGING DROP, temperature 278K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'calcium acetate' ? ? ? 1 2 1 cacodylate ? ? ? 1 3 1 beta-octylglucoside ? ? ? 1 4 1 'spermidine HCl' ? ? ? 1 5 1 2-methyl,2,4-pentanediol ? ? ? 1 6 2 'calcium acetate' ? ? ? 1 7 2 2-methyl,2,4-pentanediol ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 123 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 1999-10-27 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator mirrors _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.07200 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.07200 # _reflns.entry_id 1PJG _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 4.7 _reflns.d_resolution_high 1.15 _reflns.d_resolution_low 50.00 _reflns.number_all ? _reflns.number_obs 17368 _reflns.percent_possible_obs 96.2 _reflns.pdbx_Rmerge_I_obs 0.081 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 29.6 _reflns.B_iso_Wilson_estimate 8.170 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.15 _reflns_shell.d_res_low 1.18 _reflns_shell.percent_possible_all 93.9 _reflns_shell.Rmerge_I_obs 0.261 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 11.09 _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 882 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1PJG _refine.ls_d_res_high 1.15 _refine.ls_d_res_low 8.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all 16497 _refine.ls_number_reflns_obs 16497 _refine.ls_number_reflns_R_free 871 _refine.ls_percent_reflns_obs 95.1 _refine.ls_R_factor_all ? _refine.ls_R_factor_obs ? _refine.ls_R_factor_R_work 0.132 _refine.ls_R_factor_R_free 0.163 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_percent_reflns_R_free 5. _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_starting_model 'NDB ID AH0001' _refine.pdbx_ls_cross_valid_method ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_stereochemistry_target_values ? _refine.solvent_model_details ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_mean 10.71 _refine.aniso_B[1][1] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][2] ? _refine.aniso_B[2][3] ? _refine.aniso_B[3][3] ? _refine.details ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_B ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1PJG _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen 1.00 _refine_analyze.occupancy_sum_hydrogen 1.00 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 414 _refine_hist.pdbx_number_atoms_ligand 4 _refine_hist.number_atoms_solvent 124 _refine_hist.number_atoms_total 542 _refine_hist.d_res_high 1.15 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_angle_d 0.027 ? ? ? 'X-RAY DIFFRACTION' ? s_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used ? _refine_ls_shell.d_res_high 1.15 _refine_ls_shell.d_res_low 1.18 _refine_ls_shell.number_reflns_R_work ? _refine_ls_shell.R_factor_R_work 0.132 _refine_ls_shell.percent_reflns_obs 93.9 _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # _pdbx_refine.entry_id 1PJG _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.132 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.129 _pdbx_refine.number_reflns_obs_4sig_cutoff 15369 _pdbx_refine.free_R_factor_4sig_cutoff 0.158 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 820 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.000 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1PJG _struct.title 'RNA/DNA Hybrid Decamer of CAAAGAAAAG/CTTTTCTTTG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PJG _struct_keywords.pdbx_keywords 'DNA-RNA HYBRID' _struct_keywords.text 'RNA/DNA hybrid; Polypurine Tract of HIV-1; Moleuclar Replacement; sugar conformation, DNA-RNA COMPLEX, DNA-RNA HYBRID' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 4 ? H N N 4 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 1 PDB 1PJG 1PJG ? ? ? 2 2 PDB 1PJG 1PJG ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1PJG A 1 ? 10 ? 1PJG 1 ? 10 ? 1 10 2 2 1PJG B 1 ? 10 ? 1PJG 11 ? 20 ? 11 20 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 5 OP2 ? ? ? 1_555 C CA . CA A ? A G 5 A CA 32 1_555 ? ? ? ? ? ? ? 2.283 ? ? metalc2 metalc ? ? A A 9 OP2 ? ? ? 1_555 D CA . CA ? ? A A 9 A CA 33 1_555 ? ? ? ? ? ? ? 2.011 ? ? metalc3 metalc ? ? A A 9 OP1 ? ? ? 3_646 E CA . CA ? ? A A 9 B CA 31 1_555 ? ? ? ? ? ? ? 2.195 ? ? metalc4 metalc ? ? A G 10 OP1 ? ? ? 3_646 F CA . CA ? ? A G 10 B CA 34 1_555 ? ? ? ? ? ? ? 2.213 ? ? metalc5 metalc ? ? C CA . CA A ? ? 1_555 G HOH . O ? ? A CA 32 A HOH 84 1_555 ? ? ? ? ? ? ? 3.263 ? ? metalc6 metalc ? ? C CA . CA A ? ? 1_555 G HOH . O A ? A CA 32 A HOH 138 1_555 ? ? ? ? ? ? ? 2.227 ? ? metalc7 metalc ? ? C CA . CA B ? ? 1_555 G HOH . O B ? A CA 32 A HOH 138 1_555 ? ? ? ? ? ? ? 2.510 ? ? metalc8 metalc ? ? C CA . CA A ? ? 1_555 G HOH . O ? ? A CA 32 A HOH 139 1_555 ? ? ? ? ? ? ? 2.100 ? ? metalc9 metalc ? ? C CA . CA B ? ? 1_555 G HOH . O ? ? A CA 32 A HOH 139 1_555 ? ? ? ? ? ? ? 2.279 ? ? metalc10 metalc ? ? C CA . CA A ? ? 1_555 G HOH . O ? ? A CA 32 A HOH 140 1_555 ? ? ? ? ? ? ? 2.009 ? ? metalc11 metalc ? ? C CA . CA B ? ? 1_555 G HOH . O ? ? A CA 32 A HOH 140 1_555 ? ? ? ? ? ? ? 2.277 ? ? metalc12 metalc ? ? C CA . CA A ? ? 1_555 G HOH . O A ? A CA 32 A HOH 141 1_555 ? ? ? ? ? ? ? 2.122 ? ? metalc13 metalc ? ? C CA . CA B ? ? 1_555 G HOH . O B ? A CA 32 A HOH 141 1_555 ? ? ? ? ? ? ? 2.573 ? ? metalc14 metalc ? ? C CA . CA A ? ? 1_555 G HOH . O A ? A CA 32 A HOH 142 1_555 ? ? ? ? ? ? ? 2.524 ? ? metalc15 metalc ? ? C CA . CA B ? ? 1_555 G HOH . O B ? A CA 32 A HOH 142 1_555 ? ? ? ? ? ? ? 1.922 ? ? metalc16 metalc ? ? C CA . CA A ? ? 1_555 G HOH . O ? ? A CA 32 A HOH 143 1_555 ? ? ? ? ? ? ? 2.216 ? ? metalc17 metalc ? ? C CA . CA B ? ? 1_555 G HOH . O ? ? A CA 32 A HOH 143 1_555 ? ? ? ? ? ? ? 2.401 ? ? metalc18 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 33 A HOH 144 1_555 ? ? ? ? ? ? ? 2.038 ? ? metalc19 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 33 A HOH 145 1_555 ? ? ? ? ? ? ? 2.125 ? ? metalc20 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 33 A HOH 146 1_555 ? ? ? ? ? ? ? 2.099 ? ? metalc21 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 33 A HOH 147 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc22 metalc ? ? D CA . CA ? ? ? 1_555 G HOH . O ? ? A CA 33 A HOH 148 1_555 ? ? ? ? ? ? ? 2.132 ? ? metalc23 metalc ? ? B DT 8 OP2 ? ? ? 1_555 E CA . CA ? ? B DT 18 B CA 31 1_555 ? ? ? ? ? ? ? 2.237 ? ? metalc24 metalc ? ? B DT 8 OP1 ? ? ? 1_555 F CA . CA ? ? B DT 18 B CA 34 1_555 ? ? ? ? ? ? ? 2.223 ? ? metalc25 metalc ? ? B DG 10 OP1 B ? ? 4_567 F CA . CA ? ? B DG 20 B CA 34 1_555 ? ? ? ? ? ? ? 2.757 ? ? metalc26 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 31 B HOH 134 1_555 ? ? ? ? ? ? ? 2.288 ? ? metalc27 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 31 B HOH 135 1_555 ? ? ? ? ? ? ? 2.294 ? ? metalc28 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 31 B HOH 136 1_555 ? ? ? ? ? ? ? 2.259 ? ? metalc29 metalc ? ? E CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 31 B HOH 137 1_555 ? ? ? ? ? ? ? 2.284 ? ? metalc30 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 34 B HOH 149 1_555 ? ? ? ? ? ? ? 2.360 ? ? metalc31 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 34 B HOH 150 1_555 ? ? ? ? ? ? ? 2.019 ? ? metalc32 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 34 B HOH 151 1_555 ? ? ? ? ? ? ? 2.462 ? ? metalc33 metalc ? ? F CA . CA ? ? ? 1_555 H HOH . O ? ? B CA 34 B HOH 152 1_555 ? ? ? ? ? ? ? 2.473 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B DG 10 N1 ? ? A C 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B DG 10 O6 ? ? A C 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B DG 10 N2 ? ? A C 1 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A A 2 N1 ? ? ? 1_555 B DT 9 N3 ? ? A A 2 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A A 2 N6 ? ? ? 1_555 B DT 9 O4 ? ? A A 2 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A A 3 N1 ? ? ? 1_555 B DT 8 N3 ? ? A A 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N6 ? ? ? 1_555 B DT 8 O4 ? ? A A 3 B DT 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 4 N1 ? ? ? 1_555 B DT 7 N3 ? ? A A 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 B DT 7 O4 ? ? A A 4 B DT 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 5 N1 ? ? ? 1_555 B DC 6 N3 ? ? A G 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 5 N2 ? ? ? 1_555 B DC 6 O2 ? ? A G 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 O6 ? ? ? 1_555 B DC 6 N4 ? ? A G 5 B DC 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A A 6 N1 ? ? ? 1_555 B DT 5 N3 ? ? A A 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A A 6 N6 ? ? ? 1_555 B DT 5 O4 ? ? A A 6 B DT 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A A 7 N1 ? ? ? 1_555 B DT 4 N3 ? ? A A 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A A 7 N6 ? ? ? 1_555 B DT 4 O4 ? ? A A 7 B DT 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A A 8 N1 ? ? ? 1_555 B DT 3 N3 ? ? A A 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A A 8 N6 ? ? ? 1_555 B DT 3 O4 ? ? A A 8 B DT 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 9 N1 ? ? ? 1_555 B DT 2 N3 ? ? A A 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 B DT 2 O4 ? ? A A 9 B DT 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 10 N1 ? ? ? 1_555 B DC 1 N3 ? ? A G 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 10 N2 ? ? ? 1_555 B DC 1 O2 ? ? A G 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 O6 ? ? ? 1_555 B DC 1 N4 ? ? A G 10 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP2 ? A G 5 ? A G 5 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 84 ? 1_555 56.2 ? 2 OP2 ? A G 5 ? A G 5 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 138 ? 1_555 84.4 ? 3 O ? G HOH . ? A HOH 84 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 138 ? 1_555 78.2 ? 4 OP2 ? A G 5 ? A G 5 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 139 ? 1_555 158.9 ? 5 O ? G HOH . ? A HOH 84 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 139 ? 1_555 137.5 ? 6 O A G HOH . ? A HOH 138 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 139 ? 1_555 84.1 ? 7 OP2 ? A G 5 ? A G 5 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 140 ? 1_555 90.3 ? 8 O ? G HOH . ? A HOH 84 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 140 ? 1_555 112.0 ? 9 O A G HOH . ? A HOH 138 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 140 ? 1_555 163.1 ? 10 O ? G HOH . ? A HOH 139 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 140 ? 1_555 95.6 ? 11 OP2 ? A G 5 ? A G 5 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 141 ? 1_555 94.2 ? 12 O ? G HOH . ? A HOH 84 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 141 ? 1_555 137.5 ? 13 O A G HOH . ? A HOH 138 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 141 ? 1_555 68.2 ? 14 O ? G HOH . ? A HOH 139 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 141 ? 1_555 65.0 ? 15 O ? G HOH . ? A HOH 140 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 141 ? 1_555 96.3 ? 16 OP2 ? A G 5 ? A G 5 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 142 ? 1_555 85.0 ? 17 O ? G HOH . ? A HOH 84 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 142 ? 1_555 45.8 ? 18 O A G HOH . ? A HOH 138 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 142 ? 1_555 117.2 ? 19 O ? G HOH . ? A HOH 139 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 142 ? 1_555 116.0 ? 20 O ? G HOH . ? A HOH 140 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 142 ? 1_555 78.2 ? 21 O A G HOH . ? A HOH 141 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O A G HOH . ? A HOH 142 ? 1_555 174.4 ? 22 OP2 ? A G 5 ? A G 5 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 120.7 ? 23 O ? G HOH . ? A HOH 84 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 67.0 ? 24 O A G HOH . ? A HOH 138 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 68.2 ? 25 O ? G HOH . ? A HOH 139 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 70.6 ? 26 O ? G HOH . ? A HOH 140 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 127.7 ? 27 O A G HOH . ? A HOH 141 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 119.4 ? 28 O A G HOH . ? A HOH 142 ? 1_555 CA A C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 65.5 ? 29 OP2 ? A A 9 ? A A 9 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 144 ? 1_555 173.5 ? 30 OP2 ? A A 9 ? A A 9 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 145 ? 1_555 91.5 ? 31 O ? G HOH . ? A HOH 144 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 145 ? 1_555 88.2 ? 32 OP2 ? A A 9 ? A A 9 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 146 ? 1_555 93.1 ? 33 O ? G HOH . ? A HOH 144 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 146 ? 1_555 93.3 ? 34 O ? G HOH . ? A HOH 145 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 146 ? 1_555 90.2 ? 35 OP2 ? A A 9 ? A A 9 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 147 ? 1_555 87.3 ? 36 O ? G HOH . ? A HOH 144 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 147 ? 1_555 93.0 ? 37 O ? G HOH . ? A HOH 145 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 147 ? 1_555 178.7 ? 38 O ? G HOH . ? A HOH 146 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 147 ? 1_555 90.4 ? 39 OP2 ? A A 9 ? A A 9 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 86.2 ? 40 O ? G HOH . ? A HOH 144 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 87.4 ? 41 O ? G HOH . ? A HOH 145 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 89.0 ? 42 O ? G HOH . ? A HOH 146 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 178.9 ? 43 O ? G HOH . ? A HOH 147 ? 1_555 CA ? D CA . ? A CA 33 ? 1_555 O ? G HOH . ? A HOH 148 ? 1_555 90.4 ? 44 OP1 ? A A 9 ? A A 9 ? 3_646 CA ? E CA . ? B CA 31 ? 1_555 OP2 ? B DT 8 ? B DT 18 ? 1_555 90.8 ? 45 OP1 ? A A 9 ? A A 9 ? 3_646 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 134 ? 1_555 83.0 ? 46 OP2 ? B DT 8 ? B DT 18 ? 1_555 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 134 ? 1_555 92.4 ? 47 OP1 ? A A 9 ? A A 9 ? 3_646 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 135 ? 1_555 83.9 ? 48 OP2 ? B DT 8 ? B DT 18 ? 1_555 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 135 ? 1_555 171.8 ? 49 O ? H HOH . ? B HOH 134 ? 1_555 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 135 ? 1_555 93.1 ? 50 OP1 ? A A 9 ? A A 9 ? 3_646 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 136 ? 1_555 99.4 ? 51 OP2 ? B DT 8 ? B DT 18 ? 1_555 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 136 ? 1_555 92.0 ? 52 O ? H HOH . ? B HOH 134 ? 1_555 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 136 ? 1_555 174.9 ? 53 O ? H HOH . ? B HOH 135 ? 1_555 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 136 ? 1_555 82.7 ? 54 OP1 ? A A 9 ? A A 9 ? 3_646 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 137 ? 1_555 172.4 ? 55 OP2 ? B DT 8 ? B DT 18 ? 1_555 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 137 ? 1_555 96.6 ? 56 O ? H HOH . ? B HOH 134 ? 1_555 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 137 ? 1_555 94.8 ? 57 O ? H HOH . ? B HOH 135 ? 1_555 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 137 ? 1_555 89.0 ? 58 O ? H HOH . ? B HOH 136 ? 1_555 CA ? E CA . ? B CA 31 ? 1_555 O ? H HOH . ? B HOH 137 ? 1_555 82.2 ? 59 OP1 ? A G 10 ? A G 10 ? 3_646 CA ? F CA . ? B CA 34 ? 1_555 OP1 ? B DT 8 ? B DT 18 ? 1_555 91.2 ? 60 OP1 ? A G 10 ? A G 10 ? 3_646 CA ? F CA . ? B CA 34 ? 1_555 OP1 B B DG 10 ? B DG 20 ? 4_567 69.5 ? 61 OP1 ? B DT 8 ? B DT 18 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 OP1 B B DG 10 ? B DG 20 ? 4_567 78.4 ? 62 OP1 ? A G 10 ? A G 10 ? 3_646 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 149 ? 1_555 87.4 ? 63 OP1 ? B DT 8 ? B DT 18 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 149 ? 1_555 164.0 ? 64 OP1 B B DG 10 ? B DG 20 ? 4_567 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 149 ? 1_555 86.2 ? 65 OP1 ? A G 10 ? A G 10 ? 3_646 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 150 ? 1_555 122.7 ? 66 OP1 ? B DT 8 ? B DT 18 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 150 ? 1_555 90.4 ? 67 OP1 B B DG 10 ? B DG 20 ? 4_567 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 150 ? 1_555 54.9 ? 68 O ? H HOH . ? B HOH 149 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 150 ? 1_555 77.1 ? 69 OP1 ? A G 10 ? A G 10 ? 3_646 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 151 ? 1_555 157.9 ? 70 OP1 ? B DT 8 ? B DT 18 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 151 ? 1_555 94.3 ? 71 OP1 B B DG 10 ? B DG 20 ? 4_567 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 151 ? 1_555 132.6 ? 72 O ? H HOH . ? B HOH 149 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 151 ? 1_555 93.0 ? 73 O ? H HOH . ? B HOH 150 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 151 ? 1_555 78.7 ? 74 OP1 ? A G 10 ? A G 10 ? 3_646 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 152 ? 1_555 80.5 ? 75 OP1 ? B DT 8 ? B DT 18 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 152 ? 1_555 87.0 ? 76 OP1 B B DG 10 ? B DG 20 ? 4_567 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 152 ? 1_555 146.0 ? 77 O ? H HOH . ? B HOH 149 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 152 ? 1_555 108.4 ? 78 O ? H HOH . ? B HOH 150 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 152 ? 1_555 156.7 ? 79 O ? H HOH . ? B HOH 151 ? 1_555 CA ? F CA . ? B CA 34 ? 1_555 O ? H HOH . ? B HOH 152 ? 1_555 78.4 ? 80 O B G HOH . ? A HOH 138 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 139 ? 1_555 83.9 ? 81 O B G HOH . ? A HOH 138 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 140 ? 1_555 71.7 ? 82 O ? G HOH . ? A HOH 139 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 140 ? 1_555 83.8 ? 83 O B G HOH . ? A HOH 138 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O B G HOH . ? A HOH 141 ? 1_555 89.0 ? 84 O ? G HOH . ? A HOH 139 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O B G HOH . ? A HOH 141 ? 1_555 72.1 ? 85 O ? G HOH . ? A HOH 140 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O B G HOH . ? A HOH 141 ? 1_555 150.7 ? 86 O B G HOH . ? A HOH 138 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O B G HOH . ? A HOH 142 ? 1_555 82.6 ? 87 O ? G HOH . ? A HOH 139 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O B G HOH . ? A HOH 142 ? 1_555 166.0 ? 88 O ? G HOH . ? A HOH 140 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O B G HOH . ? A HOH 142 ? 1_555 95.3 ? 89 O B G HOH . ? A HOH 141 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O B G HOH . ? A HOH 142 ? 1_555 104.0 ? 90 O B G HOH . ? A HOH 138 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 147.8 ? 91 O ? G HOH . ? A HOH 139 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 64.4 ? 92 O ? G HOH . ? A HOH 140 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 108.3 ? 93 O B G HOH . ? A HOH 141 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 76.5 ? 94 O B G HOH . ? A HOH 142 ? 1_555 CA B C CA . ? A CA 32 ? 1_555 O ? G HOH . ? A HOH 143 ? 1_555 128.5 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B CA 31 ? 6 'BINDING SITE FOR RESIDUE CA B 31' AC2 Software A CA 32 ? 7 'BINDING SITE FOR RESIDUE CA A 32' AC3 Software A CA 33 ? 6 'BINDING SITE FOR RESIDUE CA A 33' AC4 Software B CA 34 ? 7 'BINDING SITE FOR RESIDUE CA B 34' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 A A 9 ? A A 9 . ? 3_646 ? 2 AC1 6 DT B 8 ? DT B 18 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH B 134 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH B 135 . ? 1_555 ? 5 AC1 6 HOH H . ? HOH B 136 . ? 1_555 ? 6 AC1 6 HOH H . ? HOH B 137 . ? 1_555 ? 7 AC2 7 G A 5 ? G A 5 . ? 1_555 ? 8 AC2 7 HOH G . ? HOH A 138 . ? 1_555 ? 9 AC2 7 HOH G . ? HOH A 139 . ? 1_555 ? 10 AC2 7 HOH G . ? HOH A 140 . ? 1_555 ? 11 AC2 7 HOH G . ? HOH A 141 . ? 1_555 ? 12 AC2 7 HOH G . ? HOH A 142 . ? 1_555 ? 13 AC2 7 HOH G . ? HOH A 143 . ? 1_555 ? 14 AC3 6 A A 9 ? A A 9 . ? 1_555 ? 15 AC3 6 HOH G . ? HOH A 144 . ? 1_555 ? 16 AC3 6 HOH G . ? HOH A 145 . ? 1_555 ? 17 AC3 6 HOH G . ? HOH A 146 . ? 1_555 ? 18 AC3 6 HOH G . ? HOH A 147 . ? 1_555 ? 19 AC3 6 HOH G . ? HOH A 148 . ? 1_555 ? 20 AC4 7 G A 10 ? G A 10 . ? 3_646 ? 21 AC4 7 DT B 8 ? DT B 18 . ? 1_555 ? 22 AC4 7 DG B 10 ? DG B 20 . ? 4_567 ? 23 AC4 7 HOH H . ? HOH B 149 . ? 1_555 ? 24 AC4 7 HOH H . ? HOH B 150 . ? 1_555 ? 25 AC4 7 HOH H . ? HOH B 151 . ? 1_555 ? 26 AC4 7 HOH H . ? HOH B 152 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "C2'" A G 10 ? ? "C1'" A G 10 ? ? 1.606 1.529 0.077 0.011 N 2 1 "C2'" B DG 20 ? ? "C1'" B DG 20 ? ? 1.580 1.519 0.061 0.010 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N1 A C 1 ? ? "C1'" A C 1 ? ? "C2'" A C 1 ? ? 123.42 114.00 9.42 1.30 N 2 1 "O4'" A A 2 ? ? "C1'" A A 2 ? ? N9 A A 2 ? ? 113.64 108.50 5.14 0.70 N 3 1 N9 A G 10 ? ? "C1'" A G 10 ? ? "C2'" A G 10 ? ? 103.09 112.00 -8.91 1.10 N 4 1 "O4'" A G 10 ? ? "C1'" A G 10 ? ? N9 A G 10 ? ? 113.87 108.50 5.37 0.70 N 5 1 "O4'" B DC 11 ? ? "C1'" B DC 11 ? ? N1 B DC 11 ? ? 110.23 108.30 1.93 0.30 N 6 1 "O4'" B DT 13 ? ? "C1'" B DT 13 ? ? N1 B DT 13 ? ? 111.40 108.30 3.10 0.30 N 7 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 110.79 108.30 2.49 0.30 N 8 1 "O5'" B DG 20 ? B "C5'" B DG 20 ? B "C4'" B DG 20 ? B 103.51 109.40 -5.89 0.80 N 9 1 "C4'" B DG 20 ? B "C3'" B DG 20 ? B "C2'" B DG 20 ? ? 108.55 103.10 5.45 0.90 N 10 1 "O4'" B DG 20 ? A "C1'" B DG 20 ? ? N9 B DG 20 ? ? 112.32 108.30 4.02 0.30 N 11 1 "O4'" B DG 20 ? B "C1'" B DG 20 ? ? N9 B DG 20 ? ? 111.38 108.30 3.08 0.30 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CA CA CA N N 73 DC OP3 O N N 74 DC P P N N 75 DC OP1 O N N 76 DC OP2 O N N 77 DC "O5'" O N N 78 DC "C5'" C N N 79 DC "C4'" C N R 80 DC "O4'" O N N 81 DC "C3'" C N S 82 DC "O3'" O N N 83 DC "C2'" C N N 84 DC "C1'" C N R 85 DC N1 N N N 86 DC C2 C N N 87 DC O2 O N N 88 DC N3 N N N 89 DC C4 C N N 90 DC N4 N N N 91 DC C5 C N N 92 DC C6 C N N 93 DC HOP3 H N N 94 DC HOP2 H N N 95 DC "H5'" H N N 96 DC "H5''" H N N 97 DC "H4'" H N N 98 DC "H3'" H N N 99 DC "HO3'" H N N 100 DC "H2'" H N N 101 DC "H2''" H N N 102 DC "H1'" H N N 103 DC H41 H N N 104 DC H42 H N N 105 DC H5 H N N 106 DC H6 H N N 107 DG OP3 O N N 108 DG P P N N 109 DG OP1 O N N 110 DG OP2 O N N 111 DG "O5'" O N N 112 DG "C5'" C N N 113 DG "C4'" C N R 114 DG "O4'" O N N 115 DG "C3'" C N S 116 DG "O3'" O N N 117 DG "C2'" C N N 118 DG "C1'" C N R 119 DG N9 N Y N 120 DG C8 C Y N 121 DG N7 N Y N 122 DG C5 C Y N 123 DG C6 C N N 124 DG O6 O N N 125 DG N1 N N N 126 DG C2 C N N 127 DG N2 N N N 128 DG N3 N N N 129 DG C4 C Y N 130 DG HOP3 H N N 131 DG HOP2 H N N 132 DG "H5'" H N N 133 DG "H5''" H N N 134 DG "H4'" H N N 135 DG "H3'" H N N 136 DG "HO3'" H N N 137 DG "H2'" H N N 138 DG "H2''" H N N 139 DG "H1'" H N N 140 DG H8 H N N 141 DG H1 H N N 142 DG H21 H N N 143 DG H22 H N N 144 DT OP3 O N N 145 DT P P N N 146 DT OP1 O N N 147 DT OP2 O N N 148 DT "O5'" O N N 149 DT "C5'" C N N 150 DT "C4'" C N R 151 DT "O4'" O N N 152 DT "C3'" C N S 153 DT "O3'" O N N 154 DT "C2'" C N N 155 DT "C1'" C N R 156 DT N1 N N N 157 DT C2 C N N 158 DT O2 O N N 159 DT N3 N N N 160 DT C4 C N N 161 DT O4 O N N 162 DT C5 C N N 163 DT C7 C N N 164 DT C6 C N N 165 DT HOP3 H N N 166 DT HOP2 H N N 167 DT "H5'" H N N 168 DT "H5''" H N N 169 DT "H4'" H N N 170 DT "H3'" H N N 171 DT "HO3'" H N N 172 DT "H2'" H N N 173 DT "H2''" H N N 174 DT "H1'" H N N 175 DT H3 H N N 176 DT H71 H N N 177 DT H72 H N N 178 DT H73 H N N 179 DT H6 H N N 180 G OP3 O N N 181 G P P N N 182 G OP1 O N N 183 G OP2 O N N 184 G "O5'" O N N 185 G "C5'" C N N 186 G "C4'" C N R 187 G "O4'" O N N 188 G "C3'" C N S 189 G "O3'" O N N 190 G "C2'" C N R 191 G "O2'" O N N 192 G "C1'" C N R 193 G N9 N Y N 194 G C8 C Y N 195 G N7 N Y N 196 G C5 C Y N 197 G C6 C N N 198 G O6 O N N 199 G N1 N N N 200 G C2 C N N 201 G N2 N N N 202 G N3 N N N 203 G C4 C Y N 204 G HOP3 H N N 205 G HOP2 H N N 206 G "H5'" H N N 207 G "H5''" H N N 208 G "H4'" H N N 209 G "H3'" H N N 210 G "HO3'" H N N 211 G "H2'" H N N 212 G "HO2'" H N N 213 G "H1'" H N N 214 G H8 H N N 215 G H1 H N N 216 G H21 H N N 217 G H22 H N N 218 HOH O O N N 219 HOH H1 H N N 220 HOH H2 H N N 221 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 DC OP3 P sing N N 76 DC OP3 HOP3 sing N N 77 DC P OP1 doub N N 78 DC P OP2 sing N N 79 DC P "O5'" sing N N 80 DC OP2 HOP2 sing N N 81 DC "O5'" "C5'" sing N N 82 DC "C5'" "C4'" sing N N 83 DC "C5'" "H5'" sing N N 84 DC "C5'" "H5''" sing N N 85 DC "C4'" "O4'" sing N N 86 DC "C4'" "C3'" sing N N 87 DC "C4'" "H4'" sing N N 88 DC "O4'" "C1'" sing N N 89 DC "C3'" "O3'" sing N N 90 DC "C3'" "C2'" sing N N 91 DC "C3'" "H3'" sing N N 92 DC "O3'" "HO3'" sing N N 93 DC "C2'" "C1'" sing N N 94 DC "C2'" "H2'" sing N N 95 DC "C2'" "H2''" sing N N 96 DC "C1'" N1 sing N N 97 DC "C1'" "H1'" sing N N 98 DC N1 C2 sing N N 99 DC N1 C6 sing N N 100 DC C2 O2 doub N N 101 DC C2 N3 sing N N 102 DC N3 C4 doub N N 103 DC C4 N4 sing N N 104 DC C4 C5 sing N N 105 DC N4 H41 sing N N 106 DC N4 H42 sing N N 107 DC C5 C6 doub N N 108 DC C5 H5 sing N N 109 DC C6 H6 sing N N 110 DG OP3 P sing N N 111 DG OP3 HOP3 sing N N 112 DG P OP1 doub N N 113 DG P OP2 sing N N 114 DG P "O5'" sing N N 115 DG OP2 HOP2 sing N N 116 DG "O5'" "C5'" sing N N 117 DG "C5'" "C4'" sing N N 118 DG "C5'" "H5'" sing N N 119 DG "C5'" "H5''" sing N N 120 DG "C4'" "O4'" sing N N 121 DG "C4'" "C3'" sing N N 122 DG "C4'" "H4'" sing N N 123 DG "O4'" "C1'" sing N N 124 DG "C3'" "O3'" sing N N 125 DG "C3'" "C2'" sing N N 126 DG "C3'" "H3'" sing N N 127 DG "O3'" "HO3'" sing N N 128 DG "C2'" "C1'" sing N N 129 DG "C2'" "H2'" sing N N 130 DG "C2'" "H2''" sing N N 131 DG "C1'" N9 sing N N 132 DG "C1'" "H1'" sing N N 133 DG N9 C8 sing Y N 134 DG N9 C4 sing Y N 135 DG C8 N7 doub Y N 136 DG C8 H8 sing N N 137 DG N7 C5 sing Y N 138 DG C5 C6 sing N N 139 DG C5 C4 doub Y N 140 DG C6 O6 doub N N 141 DG C6 N1 sing N N 142 DG N1 C2 sing N N 143 DG N1 H1 sing N N 144 DG C2 N2 sing N N 145 DG C2 N3 doub N N 146 DG N2 H21 sing N N 147 DG N2 H22 sing N N 148 DG N3 C4 sing N N 149 DT OP3 P sing N N 150 DT OP3 HOP3 sing N N 151 DT P OP1 doub N N 152 DT P OP2 sing N N 153 DT P "O5'" sing N N 154 DT OP2 HOP2 sing N N 155 DT "O5'" "C5'" sing N N 156 DT "C5'" "C4'" sing N N 157 DT "C5'" "H5'" sing N N 158 DT "C5'" "H5''" sing N N 159 DT "C4'" "O4'" sing N N 160 DT "C4'" "C3'" sing N N 161 DT "C4'" "H4'" sing N N 162 DT "O4'" "C1'" sing N N 163 DT "C3'" "O3'" sing N N 164 DT "C3'" "C2'" sing N N 165 DT "C3'" "H3'" sing N N 166 DT "O3'" "HO3'" sing N N 167 DT "C2'" "C1'" sing N N 168 DT "C2'" "H2'" sing N N 169 DT "C2'" "H2''" sing N N 170 DT "C1'" N1 sing N N 171 DT "C1'" "H1'" sing N N 172 DT N1 C2 sing N N 173 DT N1 C6 sing N N 174 DT C2 O2 doub N N 175 DT C2 N3 sing N N 176 DT N3 C4 sing N N 177 DT N3 H3 sing N N 178 DT C4 O4 doub N N 179 DT C4 C5 sing N N 180 DT C5 C7 sing N N 181 DT C5 C6 doub N N 182 DT C7 H71 sing N N 183 DT C7 H72 sing N N 184 DT C7 H73 sing N N 185 DT C6 H6 sing N N 186 G OP3 P sing N N 187 G OP3 HOP3 sing N N 188 G P OP1 doub N N 189 G P OP2 sing N N 190 G P "O5'" sing N N 191 G OP2 HOP2 sing N N 192 G "O5'" "C5'" sing N N 193 G "C5'" "C4'" sing N N 194 G "C5'" "H5'" sing N N 195 G "C5'" "H5''" sing N N 196 G "C4'" "O4'" sing N N 197 G "C4'" "C3'" sing N N 198 G "C4'" "H4'" sing N N 199 G "O4'" "C1'" sing N N 200 G "C3'" "O3'" sing N N 201 G "C3'" "C2'" sing N N 202 G "C3'" "H3'" sing N N 203 G "O3'" "HO3'" sing N N 204 G "C2'" "O2'" sing N N 205 G "C2'" "C1'" sing N N 206 G "C2'" "H2'" sing N N 207 G "O2'" "HO2'" sing N N 208 G "C1'" N9 sing N N 209 G "C1'" "H1'" sing N N 210 G N9 C8 sing Y N 211 G N9 C4 sing Y N 212 G C8 N7 doub Y N 213 G C8 H8 sing N N 214 G N7 C5 sing Y N 215 G C5 C6 sing N N 216 G C5 C4 doub Y N 217 G C6 O6 doub N N 218 G C6 N1 sing N N 219 G N1 C2 sing N N 220 G N1 H1 sing N N 221 G C2 N2 sing N N 222 G C2 N3 doub N N 223 G N2 H21 sing N N 224 G N2 H22 sing N N 225 G N3 C4 sing N N 226 HOH O H1 sing N N 227 HOH O H2 sing N N 228 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1PJG 'double helix' 1PJG 'a-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B DG 10 1_555 0.062 -0.059 0.595 -27.603 -11.591 -2.053 1 A_C1:DG20_B A 1 ? B 20 ? 19 1 1 A A 2 1_555 B DT 9 1_555 0.073 -0.105 -0.044 4.117 -7.661 -4.074 2 A_A2:DT19_B A 2 ? B 19 ? 20 1 1 A A 3 1_555 B DT 8 1_555 -0.018 -0.153 0.251 6.983 -21.085 0.111 3 A_A3:DT18_B A 3 ? B 18 ? 20 1 1 A A 4 1_555 B DT 7 1_555 0.030 -0.063 0.088 0.592 -24.926 11.907 4 A_A4:DT17_B A 4 ? B 17 ? 20 1 1 A G 5 1_555 B DC 6 1_555 -0.267 -0.156 -0.261 -18.398 -5.100 -1.300 5 A_G5:DC16_B A 5 ? B 16 ? 19 1 1 A A 6 1_555 B DT 5 1_555 0.107 -0.119 -0.319 -16.435 -4.501 -2.781 6 A_A6:DT15_B A 6 ? B 15 ? 20 1 1 A A 7 1_555 B DT 4 1_555 0.055 -0.112 -0.101 -4.640 -5.931 0.170 7 A_A7:DT14_B A 7 ? B 14 ? 20 1 1 A A 8 1_555 B DT 3 1_555 -0.045 -0.171 -0.089 -1.369 -12.642 3.333 8 A_A8:DT13_B A 8 ? B 13 ? 20 1 1 A A 9 1_555 B DT 2 1_555 -0.103 -0.166 -0.108 -4.920 -4.145 1.540 9 A_A9:DT12_B A 9 ? B 12 ? 20 1 1 A G 10 1_555 B DC 1 1_555 -0.064 -0.049 0.097 6.679 -6.456 2.862 10 A_G10:DC11_B A 10 ? B 11 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B DG 10 1_555 A A 2 1_555 B DT 9 1_555 -0.231 0.436 2.757 2.481 8.532 27.511 -0.758 0.939 2.735 17.375 -5.052 28.884 1 AA_C1A2:DT19DG20_BB A 1 ? B 20 ? A 2 ? B 19 ? 1 A A 2 1_555 B DT 9 1_555 A A 3 1_555 B DT 8 1_555 0.328 -0.953 3.241 -5.007 -0.489 33.993 -1.538 -1.328 3.175 -0.830 8.506 34.352 2 AA_A2A3:DT18DT19_BB A 2 ? B 19 ? A 3 ? B 18 ? 1 A A 3 1_555 B DT 8 1_555 A A 4 1_555 B DT 7 1_555 0.598 -1.027 3.506 -1.002 6.733 32.645 -2.955 -1.216 3.216 11.819 1.758 33.328 3 AA_A3A4:DT17DT18_BB A 3 ? B 18 ? A 4 ? B 17 ? 1 A A 4 1_555 B DT 7 1_555 A G 5 1_555 B DC 6 1_555 -1.821 -1.181 3.553 -7.328 18.662 37.957 -3.609 1.718 2.974 26.552 10.427 42.753 4 AA_A4G5:DC16DT17_BB A 4 ? B 17 ? A 5 ? B 16 ? 1 A G 5 1_555 B DC 6 1_555 A A 6 1_555 B DT 5 1_555 0.217 -1.669 3.393 3.408 10.747 31.747 -4.571 0.160 2.709 18.916 -5.999 33.641 5 AA_G5A6:DT15DC16_BB A 5 ? B 16 ? A 6 ? B 15 ? 1 A A 6 1_555 B DT 5 1_555 A A 7 1_555 B DT 4 1_555 0.707 -1.595 3.167 1.731 7.468 26.581 -4.989 -1.096 2.667 15.829 -3.670 27.646 6 AA_A6A7:DT14DT15_BB A 6 ? B 15 ? A 7 ? B 14 ? 1 A A 7 1_555 B DT 4 1_555 A A 8 1_555 B DT 3 1_555 1.011 -2.110 3.253 0.975 5.326 25.434 -6.060 -1.996 2.796 11.924 -2.184 25.995 7 AA_A7A8:DT13DT14_BB A 7 ? B 14 ? A 8 ? B 13 ? 1 A A 8 1_555 B DT 3 1_555 A A 9 1_555 B DT 2 1_555 -1.258 -1.634 3.248 -3.942 6.001 36.931 -3.297 1.452 3.068 9.365 6.151 37.599 8 AA_A8A9:DT12DT13_BB A 8 ? B 13 ? A 9 ? B 12 ? 1 A A 9 1_555 B DT 2 1_555 A G 10 1_555 B DC 1 1_555 0.743 -1.751 3.037 0.627 2.587 28.328 -4.101 -1.382 2.884 5.271 -1.277 28.450 9 AA_A9G10:DC11DT12_BB A 9 ? B 12 ? A 10 ? B 11 ? # _pdbx_initial_refinement_model.accession_code 404D _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details 'NDB ID AH0001' # _atom_sites.entry_id 1PJG _atom_sites.fract_transf_matrix[1][1] 0.038909 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024347 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.021684 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CA H N O P # loop_