HEADER VIRAL PROTEIN 04-JUN-03 1PJW TITLE SOLUTION STRUCTURE OF THE DOMAIN III OF THE JAPAN ENCEPHALITIS VIRUS TITLE 2 ENVELOPE PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENVELOPE PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: DOMAIN III; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JAPANESE ENCEPHALITIS VIRUS; SOURCE 3 ORGANISM_TAXID: 11072; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 6 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS FLAVIVIRUS, JEV, E PROTEIN, EPITOPE MAPPING, VIRAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 15 AUTHOR K.P.WU,C.W.WU,Y.P.TSAO,Y.C.LOU,C.W.LIN REVDAT 4 06-NOV-24 1PJW 1 REMARK REVDAT 3 23-FEB-22 1PJW 1 REMARK REVDAT 2 24-FEB-09 1PJW 1 VERSN REVDAT 1 25-NOV-03 1PJW 0 JRNL AUTH K.P.WU,C.W.WU,Y.P.TSAO,T.W.KUO,Y.C.LOU,C.W.LIN,S.C.WU, JRNL AUTH 2 J.W.CHENG JRNL TITL STRUCTURAL BASIS OF A FLAVIVIRUS RECOGNIZED BY ITS JRNL TITL 2 NEUTRALIZING ANTIBODY: SOLUTION STRUCTURE OF THE DOMAIN III JRNL TITL 3 OF THE JAPANESE ENCEPHALITIS VIRUS ENVELOPE PROTEIN. JRNL REF J.BIOL.CHEM. V. 278 46007 2003 JRNL REFN ISSN 0021-9258 JRNL PMID 12952958 JRNL DOI 10.1074/JBC.M307776200 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.6, X-PLOR 3.851 REMARK 3 AUTHORS : BO BLANTON (XWINNMR), BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 957 RESTRAINTS, 717 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 194 REMARK 3 DIHEDRAL ANGLE RESTRAINTS,46 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS. REMARK 4 REMARK 4 1PJW COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019375. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 308 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.3MM JEV DOMAIN III PROTEIN, REMARK 210 N15-C13 LABLED AND N15-LABLED, REMARK 210 136MM NACL, 2.68MM KCL, 10MM REMARK 210 NA2HPO4, 1.76MM KH2PO4 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; 3D_15N REMARK 210 -SEPARATED_NOESY; 3D_13C- REMARK 210 SEPARATED_NOESY; HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : AURELIA 2.1, NMRPIPE, X-PLOR REMARK 210 3.851 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 15 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY, STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS, STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H THR A 26 O THR A 30 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 9 109.43 -47.56 REMARK 500 1 THR A 14 41.96 -161.56 REMARK 500 1 LEU A 54 29.96 81.47 REMARK 500 1 VAL A 60 -49.08 -143.89 REMARK 500 1 VAL A 66 170.68 -44.65 REMARK 500 1 ASN A 67 157.70 -47.08 REMARK 500 1 LYS A 78 88.86 -62.87 REMARK 500 1 GLU A 84 62.87 -113.43 REMARK 500 1 MET A 96 -150.77 -108.38 REMARK 500 1 ASP A 98 -105.67 -74.98 REMARK 500 1 ALA A 108 152.36 179.76 REMARK 500 2 LYS A 6 -164.03 -106.66 REMARK 500 2 THR A 14 42.12 -160.84 REMARK 500 2 LEU A 54 29.55 81.17 REMARK 500 2 VAL A 60 -36.22 -139.20 REMARK 500 2 VAL A 66 173.30 -47.16 REMARK 500 2 LYS A 78 88.06 -63.21 REMARK 500 2 GLU A 84 68.56 -117.95 REMARK 500 2 ASP A 98 -108.41 -64.00 REMARK 500 2 ALA A 108 131.06 -172.69 REMARK 500 3 TYR A 10 174.47 -46.79 REMARK 500 3 THR A 14 44.04 -161.43 REMARK 500 3 LYS A 16 61.85 -111.48 REMARK 500 3 LEU A 54 30.51 79.53 REMARK 500 3 VAL A 60 -37.37 -148.24 REMARK 500 3 VAL A 66 -170.61 -55.07 REMARK 500 3 LYS A 78 89.56 -64.34 REMARK 500 3 GLU A 84 70.05 -118.07 REMARK 500 3 ASP A 98 -75.58 -71.14 REMARK 500 3 ALA A 108 141.14 179.73 REMARK 500 4 THR A 9 155.42 -46.67 REMARK 500 4 THR A 14 -76.55 -158.24 REMARK 500 4 LYS A 16 81.97 -56.04 REMARK 500 4 LEU A 54 30.76 77.21 REMARK 500 4 VAL A 60 -36.41 -143.86 REMARK 500 4 VAL A 66 -175.02 -57.92 REMARK 500 4 ASN A 67 156.91 -46.93 REMARK 500 4 ALA A 71 65.01 -66.09 REMARK 500 4 LYS A 78 88.33 -62.96 REMARK 500 4 GLU A 84 72.72 -106.57 REMARK 500 4 ASP A 98 -82.82 -65.97 REMARK 500 4 SER A 110 -150.47 -65.15 REMARK 500 5 LEU A 5 73.98 -103.71 REMARK 500 5 THR A 9 76.30 -114.26 REMARK 500 5 THR A 14 61.70 -160.54 REMARK 500 5 LEU A 54 30.39 80.07 REMARK 500 5 VAL A 60 -59.42 -133.83 REMARK 500 5 VAL A 66 171.25 -44.34 REMARK 500 5 ASN A 67 162.20 -46.86 REMARK 500 5 LYS A 78 89.11 -63.92 REMARK 500 REMARK 500 THIS ENTRY HAS 155 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 62 0.24 SIDE CHAIN REMARK 500 3 ARG A 62 0.21 SIDE CHAIN REMARK 500 4 ARG A 62 0.24 SIDE CHAIN REMARK 500 5 ARG A 62 0.31 SIDE CHAIN REMARK 500 6 ARG A 62 0.17 SIDE CHAIN REMARK 500 7 ARG A 62 0.31 SIDE CHAIN REMARK 500 8 ARG A 62 0.30 SIDE CHAIN REMARK 500 9 ARG A 62 0.30 SIDE CHAIN REMARK 500 10 ARG A 62 0.30 SIDE CHAIN REMARK 500 11 ARG A 62 0.21 SIDE CHAIN REMARK 500 13 ARG A 62 0.25 SIDE CHAIN REMARK 500 14 ARG A 62 0.26 SIDE CHAIN REMARK 500 15 ARG A 62 0.28 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1PJW A 1 111 UNP Q9J0X3 Q9J0X3_9FLAV 292 402 SEQRES 1 A 111 ASP LYS LEU ALA LEU LYS GLY THR THR TYR GLY MET CYS SEQRES 2 A 111 THR GLU LYS PHE SER PHE ALA LYS ASN PRO ALA ASP THR SEQRES 3 A 111 GLY HIS GLY THR VAL VAL ILE GLU LEU SER TYR SER GLY SEQRES 4 A 111 SER ASP GLY PRO CYS LYS ILE PRO ILE VAL SER VAL ALA SEQRES 5 A 111 SER LEU ASN ASP MET THR PRO VAL GLY ARG LEU VAL THR SEQRES 6 A 111 VAL ASN PRO PHE VAL ALA THR SER SER ALA ASN SER LYS SEQRES 7 A 111 VAL LEU VAL GLU MET GLU PRO PRO PHE GLY ASP SER TYR SEQRES 8 A 111 ILE VAL VAL GLY MET GLY ASP LYS GLN ILE ASN HIS HIS SEQRES 9 A 111 TRP HIS LYS ALA GLY SER THR SHEET 1 A 3 PHE A 17 ASP A 25 0 SHEET 2 A 3 VAL A 31 TYR A 37 -1 O VAL A 32 N ALA A 24 SHEET 3 A 3 LYS A 78 MET A 83 -1 O VAL A 81 N ILE A 33 SHEET 1 B 3 ILE A 48 ALA A 52 0 SHEET 2 B 3 SER A 90 GLY A 95 -1 O TYR A 91 N VAL A 51 SHEET 3 B 3 GLN A 100 TRP A 105 -1 O HIS A 103 N ILE A 92 SSBOND 1 CYS A 13 CYS A 44 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1