data_1PK3 # _entry.id 1PK3 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1PK3 pdb_00001pk3 10.2210/pdb1pk3/pdb RCSB RCSB019381 ? ? WWPDB D_1000019381 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2005-02-15 2 'Structure model' 1 1 2008-04-29 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2021-10-27 5 'Structure model' 1 4 2024-02-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' struct_ref_seq_dif 3 4 'Structure model' struct_site 4 5 'Structure model' chem_comp_atom 5 5 'Structure model' chem_comp_bond # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_ref_seq_dif.details' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1PK3 _pdbx_database_status.recvd_initial_deposition_date 2003-06-04 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1PK1 _pdbx_database_related.details 'Different mutant of same protein complexed with PhSAM.' _pdbx_database_related.content_type unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kim, C.A.' 1 'Sawaya, M.R.' 2 'Cascio, D.' 3 'Kim, W.' 4 'Bowie, J.U.' 5 # _citation.id primary _citation.title 'Structural organization of a Sex-comb-on-midleg/polyhomeotic copolymer.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 280 _citation.page_first 27769 _citation.page_last 27775 _citation.year 2005 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 15905166 _citation.pdbx_database_id_DOI 10.1074/jbc.M503055200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Kim, C.A.' 1 ? primary 'Sawaya, M.R.' 2 ? primary 'Cascio, D.' 3 ? primary 'Kim, W.' 4 ? primary 'Bowie, J.U.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Sex comb on midleg CG9495-PA' 10383.961 3 ? L841R 'sequence database residue 795-871, SAM domain of Scm' ? 2 non-polymer syn BETA-MERCAPTOETHANOL 78.133 3 ? ? ? ? 3 water nat water 18.015 146 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name Scm # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MEKTRANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICNLVNKVN GRDHHHHHH ; _entity_poly.pdbx_seq_one_letter_code_can ;MEKTRANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLRLNSEMMMKYMGLKLGPALKICNLVNKVN GRDHHHHHH ; _entity_poly.pdbx_strand_id A,B,C _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 BETA-MERCAPTOETHANOL BME 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLU n 1 3 LYS n 1 4 THR n 1 5 ARG n 1 6 ALA n 1 7 ASN n 1 8 SER n 1 9 HIS n 1 10 LEU n 1 11 ARG n 1 12 SER n 1 13 GLN n 1 14 PRO n 1 15 ILE n 1 16 ASP n 1 17 TRP n 1 18 THR n 1 19 ILE n 1 20 GLU n 1 21 GLU n 1 22 VAL n 1 23 ILE n 1 24 GLN n 1 25 TYR n 1 26 ILE n 1 27 GLU n 1 28 SER n 1 29 ASN n 1 30 ASP n 1 31 ASN n 1 32 SER n 1 33 LEU n 1 34 ALA n 1 35 VAL n 1 36 HIS n 1 37 GLY n 1 38 ASP n 1 39 LEU n 1 40 PHE n 1 41 ARG n 1 42 LYS n 1 43 HIS n 1 44 GLU n 1 45 ILE n 1 46 ASP n 1 47 GLY n 1 48 LYS n 1 49 ALA n 1 50 LEU n 1 51 LEU n 1 52 ARG n 1 53 LEU n 1 54 ASN n 1 55 SER n 1 56 GLU n 1 57 MET n 1 58 MET n 1 59 MET n 1 60 LYS n 1 61 TYR n 1 62 MET n 1 63 GLY n 1 64 LEU n 1 65 LYS n 1 66 LEU n 1 67 GLY n 1 68 PRO n 1 69 ALA n 1 70 LEU n 1 71 LYS n 1 72 ILE n 1 73 CYS n 1 74 ASN n 1 75 LEU n 1 76 VAL n 1 77 ASN n 1 78 LYS n 1 79 VAL n 1 80 ASN n 1 81 GLY n 1 82 ARG n 1 83 ASP n 1 84 HIS n 1 85 HIS n 1 86 HIS n 1 87 HIS n 1 88 HIS n 1 89 HIS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'fruit fly' _entity_src_gen.gene_src_genus Drosophila _entity_src_gen.pdbx_gene_src_gene Scm _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Drosophila melanogaster' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7227 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) pLysS' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pET-3c _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BME non-polymer . BETA-MERCAPTOETHANOL ? 'C2 H6 O S' 78.133 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 GLU 2 2 ? ? ? A . n A 1 3 LYS 3 3 ? ? ? A . n A 1 4 THR 4 4 ? ? ? A . n A 1 5 ARG 5 5 5 ARG ALA A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 ASN 7 7 7 ASN ASN A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 HIS 9 9 9 HIS HIS A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 ARG 11 11 11 ARG ARG A . n A 1 12 SER 12 12 12 SER SER A . n A 1 13 GLN 13 13 13 GLN GLN A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 ASP 16 16 16 ASP ASP A . n A 1 17 TRP 17 17 17 TRP TRP A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 ILE 19 19 19 ILE ILE A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 GLN 24 24 24 GLN GLN A . n A 1 25 TYR 25 25 25 TYR TYR A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 GLU 27 27 27 GLU GLU A . n A 1 28 SER 28 28 28 SER SER A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 ASP 30 30 30 ASP ASP A . n A 1 31 ASN 31 31 31 ASN ASN A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 ALA 34 34 34 ALA ALA A . n A 1 35 VAL 35 35 35 VAL VAL A . n A 1 36 HIS 36 36 36 HIS HIS A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ASP 38 38 38 ASP ASP A . n A 1 39 LEU 39 39 39 LEU LEU A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 HIS 43 43 43 HIS HIS A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 ILE 45 45 45 ILE ILE A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 GLY 47 47 47 GLY GLY A . n A 1 48 LYS 48 48 48 LYS LYS A . n A 1 49 ALA 49 49 49 ALA ALA A . n A 1 50 LEU 50 50 50 LEU LEU A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ARG 52 52 52 ARG ARG A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 GLU 56 56 56 GLU GLU A . n A 1 57 MET 57 57 57 MET MET A . n A 1 58 MET 58 58 58 MET MET A . n A 1 59 MET 59 59 59 MET MET A . n A 1 60 LYS 60 60 60 LYS LYS A . n A 1 61 TYR 61 61 61 TYR TYR A . n A 1 62 MET 62 62 62 MET MET A . n A 1 63 GLY 63 63 63 GLY GLY A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 LYS 65 65 65 LYS LYS A . n A 1 66 LEU 66 66 66 LEU LEU A . n A 1 67 GLY 67 67 67 GLY GLY A . n A 1 68 PRO 68 68 68 PRO PRO A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 LYS 71 71 71 LYS LYS A . n A 1 72 ILE 72 72 72 ILE ILE A . n A 1 73 CYS 73 73 73 CYS CYS A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LEU 75 75 75 LEU LEU A . n A 1 76 VAL 76 76 76 VAL VAL A . n A 1 77 ASN 77 77 77 ASN ASN A . n A 1 78 LYS 78 78 78 LYS LYS A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 ASN 80 80 80 ASN ASN A . n A 1 81 GLY 81 81 ? ? ? A . n A 1 82 ARG 82 82 ? ? ? A . n A 1 83 ASP 83 83 ? ? ? A . n A 1 84 HIS 84 84 ? ? ? A . n A 1 85 HIS 85 85 ? ? ? A . n A 1 86 HIS 86 86 ? ? ? A . n A 1 87 HIS 87 87 ? ? ? A . n A 1 88 HIS 88 88 ? ? ? A . n A 1 89 HIS 89 89 ? ? ? A . n B 1 1 MET 1 1 ? ? ? B . n B 1 2 GLU 2 2 ? ? ? B . n B 1 3 LYS 3 3 ? ? ? B . n B 1 4 THR 4 4 ? ? ? B . n B 1 5 ARG 5 5 ? ? ? B . n B 1 6 ALA 6 6 ? ? ? B . n B 1 7 ASN 7 7 ? ? ? B . n B 1 8 SER 8 8 ? ? ? B . n B 1 9 HIS 9 9 ? ? ? B . n B 1 10 LEU 10 10 ? ? ? B . n B 1 11 ARG 11 11 ? ? ? B . n B 1 12 SER 12 12 ? ? ? B . n B 1 13 GLN 13 13 13 GLN GLN B . n B 1 14 PRO 14 14 14 PRO PRO B . n B 1 15 ILE 15 15 15 ILE ILE B . n B 1 16 ASP 16 16 16 ASP ASP B . n B 1 17 TRP 17 17 17 TRP TRP B . n B 1 18 THR 18 18 18 THR THR B . n B 1 19 ILE 19 19 19 ILE ILE B . n B 1 20 GLU 20 20 20 GLU GLU B . n B 1 21 GLU 21 21 21 GLU GLU B . n B 1 22 VAL 22 22 22 VAL VAL B . n B 1 23 ILE 23 23 23 ILE ILE B . n B 1 24 GLN 24 24 24 GLN GLN B . n B 1 25 TYR 25 25 25 TYR TYR B . n B 1 26 ILE 26 26 26 ILE ILE B . n B 1 27 GLU 27 27 27 GLU GLU B . n B 1 28 SER 28 28 28 SER SER B . n B 1 29 ASN 29 29 29 ASN ASN B . n B 1 30 ASP 30 30 30 ASP ASP B . n B 1 31 ASN 31 31 31 ASN ASN B . n B 1 32 SER 32 32 32 SER SER B . n B 1 33 LEU 33 33 33 LEU LEU B . n B 1 34 ALA 34 34 34 ALA ALA B . n B 1 35 VAL 35 35 35 VAL VAL B . n B 1 36 HIS 36 36 36 HIS HIS B . n B 1 37 GLY 37 37 37 GLY GLY B . n B 1 38 ASP 38 38 38 ASP ASP B . n B 1 39 LEU 39 39 39 LEU LEU B . n B 1 40 PHE 40 40 40 PHE PHE B . n B 1 41 ARG 41 41 41 ARG ARG B . n B 1 42 LYS 42 42 42 LYS LYS B . n B 1 43 HIS 43 43 43 HIS HIS B . n B 1 44 GLU 44 44 44 GLU GLU B . n B 1 45 ILE 45 45 45 ILE ILE B . n B 1 46 ASP 46 46 46 ASP ASP B . n B 1 47 GLY 47 47 47 GLY GLY B . n B 1 48 LYS 48 48 48 LYS LYS B . n B 1 49 ALA 49 49 49 ALA ALA B . n B 1 50 LEU 50 50 50 LEU LEU B . n B 1 51 LEU 51 51 51 LEU LEU B . n B 1 52 ARG 52 52 52 ARG ARG B . n B 1 53 LEU 53 53 53 LEU LEU B . n B 1 54 ASN 54 54 54 ASN ASN B . n B 1 55 SER 55 55 55 SER SER B . n B 1 56 GLU 56 56 56 GLU GLU B . n B 1 57 MET 57 57 57 MET MET B . n B 1 58 MET 58 58 58 MET MET B . n B 1 59 MET 59 59 59 MET MET B . n B 1 60 LYS 60 60 60 LYS LYS B . n B 1 61 TYR 61 61 61 TYR TYR B . n B 1 62 MET 62 62 62 MET MET B . n B 1 63 GLY 63 63 63 GLY GLY B . n B 1 64 LEU 64 64 64 LEU LEU B . n B 1 65 LYS 65 65 65 LYS LYS B . n B 1 66 LEU 66 66 66 LEU LEU B . n B 1 67 GLY 67 67 67 GLY GLY B . n B 1 68 PRO 68 68 68 PRO PRO B . n B 1 69 ALA 69 69 69 ALA ALA B . n B 1 70 LEU 70 70 70 LEU LEU B . n B 1 71 LYS 71 71 71 LYS LYS B . n B 1 72 ILE 72 72 72 ILE ILE B . n B 1 73 CYS 73 73 73 CYS CYS B . n B 1 74 ASN 74 74 74 ASN ASN B . n B 1 75 LEU 75 75 75 LEU LEU B . n B 1 76 VAL 76 76 76 VAL VAL B . n B 1 77 ASN 77 77 77 ASN ASN B . n B 1 78 LYS 78 78 78 LYS LYS B . n B 1 79 VAL 79 79 79 VAL VAL B . n B 1 80 ASN 80 80 80 ASN ASN B . n B 1 81 GLY 81 81 ? ? ? B . n B 1 82 ARG 82 82 ? ? ? B . n B 1 83 ASP 83 83 ? ? ? B . n B 1 84 HIS 84 84 ? ? ? B . n B 1 85 HIS 85 85 ? ? ? B . n B 1 86 HIS 86 86 ? ? ? B . n B 1 87 HIS 87 87 ? ? ? B . n B 1 88 HIS 88 88 ? ? ? B . n B 1 89 HIS 89 89 ? ? ? B . n C 1 1 MET 1 1 ? ? ? C . n C 1 2 GLU 2 2 ? ? ? C . n C 1 3 LYS 3 3 3 LYS ALA C . n C 1 4 THR 4 4 4 THR THR C . n C 1 5 ARG 5 5 5 ARG ARG C . n C 1 6 ALA 6 6 6 ALA ALA C . n C 1 7 ASN 7 7 7 ASN ASN C . n C 1 8 SER 8 8 8 SER SER C . n C 1 9 HIS 9 9 9 HIS HIS C . n C 1 10 LEU 10 10 10 LEU LEU C . n C 1 11 ARG 11 11 11 ARG ARG C . n C 1 12 SER 12 12 12 SER SER C . n C 1 13 GLN 13 13 13 GLN GLN C . n C 1 14 PRO 14 14 14 PRO PRO C . n C 1 15 ILE 15 15 15 ILE ILE C . n C 1 16 ASP 16 16 16 ASP ASP C . n C 1 17 TRP 17 17 17 TRP TRP C . n C 1 18 THR 18 18 18 THR THR C . n C 1 19 ILE 19 19 19 ILE ILE C . n C 1 20 GLU 20 20 20 GLU GLU C . n C 1 21 GLU 21 21 21 GLU GLU C . n C 1 22 VAL 22 22 22 VAL VAL C . n C 1 23 ILE 23 23 23 ILE ILE C . n C 1 24 GLN 24 24 24 GLN GLN C . n C 1 25 TYR 25 25 25 TYR TYR C . n C 1 26 ILE 26 26 26 ILE ILE C . n C 1 27 GLU 27 27 27 GLU GLU C . n C 1 28 SER 28 28 28 SER SER C . n C 1 29 ASN 29 29 29 ASN ASN C . n C 1 30 ASP 30 30 30 ASP ASP C . n C 1 31 ASN 31 31 31 ASN ASN C . n C 1 32 SER 32 32 32 SER SER C . n C 1 33 LEU 33 33 33 LEU LEU C . n C 1 34 ALA 34 34 34 ALA ALA C . n C 1 35 VAL 35 35 35 VAL VAL C . n C 1 36 HIS 36 36 36 HIS HIS C . n C 1 37 GLY 37 37 37 GLY GLY C . n C 1 38 ASP 38 38 38 ASP ASP C . n C 1 39 LEU 39 39 39 LEU LEU C . n C 1 40 PHE 40 40 40 PHE PHE C . n C 1 41 ARG 41 41 41 ARG ARG C . n C 1 42 LYS 42 42 42 LYS LYS C . n C 1 43 HIS 43 43 43 HIS HIS C . n C 1 44 GLU 44 44 44 GLU GLU C . n C 1 45 ILE 45 45 45 ILE ILE C . n C 1 46 ASP 46 46 46 ASP ASP C . n C 1 47 GLY 47 47 47 GLY GLY C . n C 1 48 LYS 48 48 48 LYS LYS C . n C 1 49 ALA 49 49 49 ALA ALA C . n C 1 50 LEU 50 50 50 LEU LEU C . n C 1 51 LEU 51 51 51 LEU LEU C . n C 1 52 ARG 52 52 52 ARG ARG C . n C 1 53 LEU 53 53 53 LEU LEU C . n C 1 54 ASN 54 54 54 ASN ASN C . n C 1 55 SER 55 55 55 SER SER C . n C 1 56 GLU 56 56 56 GLU GLU C . n C 1 57 MET 57 57 57 MET MET C . n C 1 58 MET 58 58 58 MET MET C . n C 1 59 MET 59 59 59 MET MET C . n C 1 60 LYS 60 60 60 LYS LYS C . n C 1 61 TYR 61 61 61 TYR TYR C . n C 1 62 MET 62 62 62 MET MET C . n C 1 63 GLY 63 63 63 GLY GLY C . n C 1 64 LEU 64 64 64 LEU LEU C . n C 1 65 LYS 65 65 65 LYS LYS C . n C 1 66 LEU 66 66 66 LEU LEU C . n C 1 67 GLY 67 67 67 GLY GLY C . n C 1 68 PRO 68 68 68 PRO PRO C . n C 1 69 ALA 69 69 69 ALA ALA C . n C 1 70 LEU 70 70 70 LEU LEU C . n C 1 71 LYS 71 71 71 LYS LYS C . n C 1 72 ILE 72 72 72 ILE ILE C . n C 1 73 CYS 73 73 73 CYS CYS C . n C 1 74 ASN 74 74 74 ASN ASN C . n C 1 75 LEU 75 75 75 LEU LEU C . n C 1 76 VAL 76 76 76 VAL VAL C . n C 1 77 ASN 77 77 77 ASN ASN C . n C 1 78 LYS 78 78 78 LYS LYS C . n C 1 79 VAL 79 79 79 VAL VAL C . n C 1 80 ASN 80 80 80 ASN ASN C . n C 1 81 GLY 81 81 ? ? ? C . n C 1 82 ARG 82 82 ? ? ? C . n C 1 83 ASP 83 83 ? ? ? C . n C 1 84 HIS 84 84 ? ? ? C . n C 1 85 HIS 85 85 ? ? ? C . n C 1 86 HIS 86 86 ? ? ? C . n C 1 87 HIS 87 87 ? ? ? C . n C 1 88 HIS 88 88 ? ? ? C . n C 1 89 HIS 89 89 ? ? ? C . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 BME 1 1001 1 BME SEO A . E 2 BME 1 1002 2 BME SEO B . F 2 BME 1 1003 3 BME SEO C . G 3 HOH 1 1002 9 HOH TIP A . G 3 HOH 2 1003 11 HOH TIP A . G 3 HOH 3 1004 16 HOH TIP A . G 3 HOH 4 1005 19 HOH TIP A . G 3 HOH 5 1006 24 HOH TIP A . G 3 HOH 6 1007 33 HOH TIP A . G 3 HOH 7 1008 37 HOH TIP A . G 3 HOH 8 1009 41 HOH TIP A . G 3 HOH 9 1010 50 HOH TIP A . G 3 HOH 10 1011 55 HOH TIP A . G 3 HOH 11 1012 57 HOH TIP A . G 3 HOH 12 1013 61 HOH TIP A . G 3 HOH 13 1014 62 HOH TIP A . G 3 HOH 14 1015 63 HOH TIP A . G 3 HOH 15 1016 68 HOH TIP A . G 3 HOH 16 1017 71 HOH TIP A . G 3 HOH 17 1018 72 HOH TIP A . G 3 HOH 18 1019 77 HOH TIP A . G 3 HOH 19 1020 79 HOH TIP A . G 3 HOH 20 1021 90 HOH TIP A . G 3 HOH 21 1022 92 HOH TIP A . G 3 HOH 22 1023 94 HOH TIP A . G 3 HOH 23 1024 97 HOH TIP A . G 3 HOH 24 1025 100 HOH TIP A . G 3 HOH 25 1026 101 HOH TIP A . G 3 HOH 26 1027 111 HOH TIP A . G 3 HOH 27 1028 113 HOH TIP A . G 3 HOH 28 1029 114 HOH TIP A . G 3 HOH 29 1030 120 HOH TIP A . G 3 HOH 30 1031 123 HOH TIP A . G 3 HOH 31 1032 128 HOH TIP A . G 3 HOH 32 1033 135 HOH TIP A . G 3 HOH 33 1034 136 HOH TIP A . G 3 HOH 34 1035 137 HOH TIP A . G 3 HOH 35 1036 138 HOH TIP A . G 3 HOH 36 1037 142 HOH TIP A . G 3 HOH 37 1038 146 HOH TIP A . H 3 HOH 1 1003 2 HOH TIP B . H 3 HOH 2 1004 4 HOH TIP B . H 3 HOH 3 1005 6 HOH TIP B . H 3 HOH 4 1006 15 HOH TIP B . H 3 HOH 5 1007 17 HOH TIP B . H 3 HOH 6 1008 22 HOH TIP B . H 3 HOH 7 1009 25 HOH TIP B . H 3 HOH 8 1010 28 HOH TIP B . H 3 HOH 9 1011 29 HOH TIP B . H 3 HOH 10 1012 32 HOH TIP B . H 3 HOH 11 1013 34 HOH TIP B . H 3 HOH 12 1014 38 HOH TIP B . H 3 HOH 13 1015 39 HOH TIP B . H 3 HOH 14 1016 40 HOH TIP B . H 3 HOH 15 1017 43 HOH TIP B . H 3 HOH 16 1018 47 HOH TIP B . H 3 HOH 17 1019 51 HOH TIP B . H 3 HOH 18 1020 56 HOH TIP B . H 3 HOH 19 1021 58 HOH TIP B . H 3 HOH 20 1022 65 HOH TIP B . H 3 HOH 21 1023 66 HOH TIP B . H 3 HOH 22 1024 70 HOH TIP B . H 3 HOH 23 1025 73 HOH TIP B . H 3 HOH 24 1026 74 HOH TIP B . H 3 HOH 25 1027 76 HOH TIP B . H 3 HOH 26 1028 78 HOH TIP B . H 3 HOH 27 1029 81 HOH TIP B . H 3 HOH 28 1030 82 HOH TIP B . H 3 HOH 29 1031 83 HOH TIP B . H 3 HOH 30 1032 86 HOH TIP B . H 3 HOH 31 1033 88 HOH TIP B . H 3 HOH 32 1034 89 HOH TIP B . H 3 HOH 33 1035 98 HOH TIP B . H 3 HOH 34 1036 103 HOH TIP B . H 3 HOH 35 1037 105 HOH TIP B . H 3 HOH 36 1038 106 HOH TIP B . H 3 HOH 37 1039 110 HOH TIP B . H 3 HOH 38 1040 119 HOH TIP B . H 3 HOH 39 1041 121 HOH TIP B . H 3 HOH 40 1042 124 HOH TIP B . H 3 HOH 41 1043 127 HOH TIP B . H 3 HOH 42 1044 129 HOH TIP B . H 3 HOH 43 1045 130 HOH TIP B . H 3 HOH 44 1046 131 HOH TIP B . H 3 HOH 45 1047 139 HOH TIP B . H 3 HOH 46 1048 141 HOH TIP B . H 3 HOH 47 1049 144 HOH TIP B . I 3 HOH 1 1004 1 HOH TIP C . I 3 HOH 2 1005 3 HOH TIP C . I 3 HOH 3 1006 5 HOH TIP C . I 3 HOH 4 1007 7 HOH TIP C . I 3 HOH 5 1008 8 HOH TIP C . I 3 HOH 6 1009 10 HOH TIP C . I 3 HOH 7 1010 12 HOH TIP C . I 3 HOH 8 1011 13 HOH TIP C . I 3 HOH 9 1012 14 HOH TIP C . I 3 HOH 10 1013 18 HOH TIP C . I 3 HOH 11 1014 20 HOH TIP C . I 3 HOH 12 1015 21 HOH TIP C . I 3 HOH 13 1016 23 HOH TIP C . I 3 HOH 14 1017 26 HOH TIP C . I 3 HOH 15 1018 27 HOH TIP C . I 3 HOH 16 1019 30 HOH TIP C . I 3 HOH 17 1020 31 HOH TIP C . I 3 HOH 18 1021 35 HOH TIP C . I 3 HOH 19 1022 36 HOH TIP C . I 3 HOH 20 1023 42 HOH TIP C . I 3 HOH 21 1024 44 HOH TIP C . I 3 HOH 22 1025 45 HOH TIP C . I 3 HOH 23 1026 46 HOH TIP C . I 3 HOH 24 1027 48 HOH TIP C . I 3 HOH 25 1028 49 HOH TIP C . I 3 HOH 26 1029 52 HOH TIP C . I 3 HOH 27 1030 53 HOH TIP C . I 3 HOH 28 1031 54 HOH TIP C . I 3 HOH 29 1032 59 HOH TIP C . I 3 HOH 30 1033 60 HOH TIP C . I 3 HOH 31 1034 64 HOH TIP C . I 3 HOH 32 1035 67 HOH TIP C . I 3 HOH 33 1036 69 HOH TIP C . I 3 HOH 34 1037 75 HOH TIP C . I 3 HOH 35 1038 80 HOH TIP C . I 3 HOH 36 1039 84 HOH TIP C . I 3 HOH 37 1040 85 HOH TIP C . I 3 HOH 38 1041 87 HOH TIP C . I 3 HOH 39 1042 91 HOH TIP C . I 3 HOH 40 1043 93 HOH TIP C . I 3 HOH 41 1044 95 HOH TIP C . I 3 HOH 42 1045 96 HOH TIP C . I 3 HOH 43 1046 99 HOH TIP C . I 3 HOH 44 1047 102 HOH TIP C . I 3 HOH 45 1048 104 HOH TIP C . I 3 HOH 46 1049 107 HOH TIP C . I 3 HOH 47 1050 108 HOH TIP C . I 3 HOH 48 1051 109 HOH TIP C . I 3 HOH 49 1052 112 HOH TIP C . I 3 HOH 50 1053 115 HOH TIP C . I 3 HOH 51 1054 116 HOH TIP C . I 3 HOH 52 1055 117 HOH TIP C . I 3 HOH 53 1056 118 HOH TIP C . I 3 HOH 54 1057 122 HOH TIP C . I 3 HOH 55 1058 125 HOH TIP C . I 3 HOH 56 1059 126 HOH TIP C . I 3 HOH 57 1060 132 HOH TIP C . I 3 HOH 58 1061 133 HOH TIP C . I 3 HOH 59 1062 134 HOH TIP C . I 3 HOH 60 1063 140 HOH TIP C . I 3 HOH 61 1064 143 HOH TIP C . I 3 HOH 62 1065 145 HOH TIP C . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ARG 5 ? CG ? A ARG 5 CG 2 1 Y 1 A ARG 5 ? CD ? A ARG 5 CD 3 1 Y 1 A ARG 5 ? NE ? A ARG 5 NE 4 1 Y 1 A ARG 5 ? CZ ? A ARG 5 CZ 5 1 Y 1 A ARG 5 ? NH1 ? A ARG 5 NH1 6 1 Y 1 A ARG 5 ? NH2 ? A ARG 5 NH2 7 1 Y 1 C LYS 3 ? CG ? C LYS 3 CG 8 1 Y 1 C LYS 3 ? CD ? C LYS 3 CD 9 1 Y 1 C LYS 3 ? CE ? C LYS 3 CE 10 1 Y 1 C LYS 3 ? NZ ? C LYS 3 NZ # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement 1.1 ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 EPMR phasing . ? 4 # _cell.entry_id 1PK3 _cell.length_a 52.150 _cell.length_b 63.993 _cell.length_c 103.638 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1PK3 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 1PK3 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.78 _exptl_crystal.density_percent_sol 55.68 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 318 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.pdbx_details 'ammonium acetate, pH 6.4, VAPOR DIFFUSION, HANGING DROP, temperature 318K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 148 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS IV' _diffrn_detector.pdbx_collection_date 2001-06-25 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'RIGAKU FR-D' _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1PK3 _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 80 _reflns.d_resolution_high 1.85 _reflns.number_obs 29232 _reflns.number_all 29232 _reflns.percent_possible_obs 96.1 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.038 _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 23.6 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.85 _reflns_shell.d_res_low 1.92 _reflns_shell.percent_possible_all 99.2 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1PK3 _refine.ls_number_reflns_obs 29172 _refine.ls_number_reflns_all 29172 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 1155163.55 _refine.pdbx_data_cutoff_low_absF 0.000000 _refine.pdbx_data_cutoff_high_rms_absF 1155163.55 _refine.ls_d_res_low 19.84 _refine.ls_d_res_high 1.85 _refine.ls_percent_reflns_obs 96.1 _refine.ls_R_factor_obs 0.215 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.215 _refine.ls_R_factor_R_free 0.231 _refine.ls_R_factor_R_free_error 0.006 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 1431 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean 34.8 _refine.aniso_B[1][1] 16.42 _refine.aniso_B[2][2] -7.21 _refine.aniso_B[3][3] -9.21 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.420923 _refine.solvent_model_param_bsol 58.591 _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1PK3 _refine_analyze.Luzzati_coordinate_error_obs 0.22 _refine_analyze.Luzzati_sigma_a_obs 0.17 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.24 _refine_analyze.Luzzati_sigma_a_free 0.19 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1768 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 1926 _refine_hist.d_res_high 1.85 _refine_hist.d_res_low 19.84 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.005 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.1 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 19.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.74 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.28 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 1.94 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.17 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.21 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.85 _refine_ls_shell.d_res_low 1.92 _refine_ls_shell.number_reflns_R_work 4708 _refine_ls_shell.R_factor_R_work 0.299 _refine_ls_shell.percent_reflns_obs 99.2 _refine_ls_shell.R_factor_R_free 0.329 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 4.8 _refine_ls_shell.number_reflns_R_free 136 _refine_ls_shell.number_reflns_obs 2791 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM BME.TOP 'X-RAY DIFFRACTION' 3 BME.PARAM ? 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 1PK3 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1PK3 _struct.title 'Scm SAM domain' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1PK3 _struct_keywords.pdbx_keywords 'transcription repression' _struct_keywords.text 'SAM domain, polymer, transcriptional repression, transcription repression' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 3 ? H N N 3 ? I N N 3 ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code SCM_DROME _struct_ref.pdbx_db_accession Q9VHA0 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ANSHLRSQPIDWTIEEVIQYIESNDNSLAVHGDLFRKHEIDGKALLLLNSEMMMKYMGLKLGPALKICNLVNKVNGR _struct_ref.pdbx_align_begin 795 _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1PK3 A 6 ? 82 ? Q9VHA0 795 ? 871 ? 6 82 2 1 1PK3 B 6 ? 82 ? Q9VHA0 795 ? 871 ? 6 82 3 1 1PK3 C 6 ? 82 ? Q9VHA0 795 ? 871 ? 6 82 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1PK3 MET A 1 ? UNP Q9VHA0 ? ? 'cloning artifact' 1 1 1 1PK3 GLU A 2 ? UNP Q9VHA0 ? ? 'cloning artifact' 2 2 1 1PK3 LYS A 3 ? UNP Q9VHA0 ? ? 'cloning artifact' 3 3 1 1PK3 THR A 4 ? UNP Q9VHA0 ? ? 'cloning artifact' 4 4 1 1PK3 ARG A 5 ? UNP Q9VHA0 ? ? 'cloning artifact' 5 5 1 1PK3 ARG A 52 ? UNP Q9VHA0 LEU 841 'engineered mutation' 52 6 1 1PK3 ASP A 83 ? UNP Q9VHA0 ? ? 'expression tag' 83 7 1 1PK3 HIS A 84 ? UNP Q9VHA0 ? ? 'expression tag' 84 8 1 1PK3 HIS A 85 ? UNP Q9VHA0 ? ? 'expression tag' 85 9 1 1PK3 HIS A 86 ? UNP Q9VHA0 ? ? 'expression tag' 86 10 1 1PK3 HIS A 87 ? UNP Q9VHA0 ? ? 'expression tag' 87 11 1 1PK3 HIS A 88 ? UNP Q9VHA0 ? ? 'expression tag' 88 12 1 1PK3 HIS A 89 ? UNP Q9VHA0 ? ? 'expression tag' 89 13 2 1PK3 MET B 1 ? UNP Q9VHA0 ? ? 'cloning artifact' 1 14 2 1PK3 GLU B 2 ? UNP Q9VHA0 ? ? 'cloning artifact' 2 15 2 1PK3 LYS B 3 ? UNP Q9VHA0 ? ? 'cloning artifact' 3 16 2 1PK3 THR B 4 ? UNP Q9VHA0 ? ? 'cloning artifact' 4 17 2 1PK3 ARG B 5 ? UNP Q9VHA0 ? ? 'cloning artifact' 5 18 2 1PK3 ARG B 52 ? UNP Q9VHA0 LEU 841 'engineered mutation' 52 19 2 1PK3 ASP B 83 ? UNP Q9VHA0 ? ? 'expression tag' 83 20 2 1PK3 HIS B 84 ? UNP Q9VHA0 ? ? 'expression tag' 84 21 2 1PK3 HIS B 85 ? UNP Q9VHA0 ? ? 'expression tag' 85 22 2 1PK3 HIS B 86 ? UNP Q9VHA0 ? ? 'expression tag' 86 23 2 1PK3 HIS B 87 ? UNP Q9VHA0 ? ? 'expression tag' 87 24 2 1PK3 HIS B 88 ? UNP Q9VHA0 ? ? 'expression tag' 88 25 2 1PK3 HIS B 89 ? UNP Q9VHA0 ? ? 'expression tag' 89 26 3 1PK3 MET C 1 ? UNP Q9VHA0 ? ? 'cloning artifact' 1 27 3 1PK3 GLU C 2 ? UNP Q9VHA0 ? ? 'cloning artifact' 2 28 3 1PK3 LYS C 3 ? UNP Q9VHA0 ? ? 'cloning artifact' 3 29 3 1PK3 THR C 4 ? UNP Q9VHA0 ? ? 'cloning artifact' 4 30 3 1PK3 ARG C 5 ? UNP Q9VHA0 ? ? 'cloning artifact' 5 31 3 1PK3 ARG C 52 ? UNP Q9VHA0 LEU 841 'engineered mutation' 52 32 3 1PK3 ASP C 83 ? UNP Q9VHA0 ? ? 'expression tag' 83 33 3 1PK3 HIS C 84 ? UNP Q9VHA0 ? ? 'expression tag' 84 34 3 1PK3 HIS C 85 ? UNP Q9VHA0 ? ? 'expression tag' 85 35 3 1PK3 HIS C 86 ? UNP Q9VHA0 ? ? 'expression tag' 86 36 3 1PK3 HIS C 87 ? UNP Q9VHA0 ? ? 'expression tag' 87 37 3 1PK3 HIS C 88 ? UNP Q9VHA0 ? ? 'expression tag' 88 38 3 1PK3 HIS C 89 ? UNP Q9VHA0 ? ? 'expression tag' 89 39 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? monomeric 1 2 author_defined_assembly ? monomeric 1 3 author_defined_assembly ? monomeric 1 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,D,G 2 1 B,E,H 3 1 C,F,I # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.pdbx_parent_biol_id _struct_biol.details 1 ? ? 2 ? ? 3 ? ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 7 ? SER A 12 ? ASN A 7 SER A 12 5 ? 6 HELX_P HELX_P2 2 GLN A 13 ? TRP A 17 ? GLN A 13 TRP A 17 5 ? 5 HELX_P HELX_P3 3 THR A 18 ? ASP A 30 ? THR A 18 ASP A 30 1 ? 13 HELX_P HELX_P4 4 ASN A 31 ? VAL A 35 ? ASN A 31 VAL A 35 5 ? 5 HELX_P HELX_P5 5 HIS A 36 ? HIS A 43 ? HIS A 36 HIS A 43 1 ? 8 HELX_P HELX_P6 6 ASP A 46 ? LEU A 51 ? ASP A 46 LEU A 51 1 ? 6 HELX_P HELX_P7 7 ASN A 54 ? GLY A 63 ? ASN A 54 GLY A 63 1 ? 10 HELX_P HELX_P8 8 LYS A 65 ? VAL A 79 ? LYS A 65 VAL A 79 1 ? 15 HELX_P HELX_P9 9 ASN A 80 ? ASN A 80 ? ASN A 80 ASN A 80 5 ? 1 HELX_P HELX_P10 10 GLN B 13 ? TRP B 17 ? GLN B 13 TRP B 17 5 ? 5 HELX_P HELX_P11 11 THR B 18 ? ASP B 30 ? THR B 18 ASP B 30 1 ? 13 HELX_P HELX_P12 12 ASN B 31 ? VAL B 35 ? ASN B 31 VAL B 35 5 ? 5 HELX_P HELX_P13 13 HIS B 36 ? HIS B 43 ? HIS B 36 HIS B 43 1 ? 8 HELX_P HELX_P14 14 ASP B 46 ? LEU B 51 ? ASP B 46 LEU B 51 1 ? 6 HELX_P HELX_P15 15 ASN B 54 ? MET B 62 ? ASN B 54 MET B 62 1 ? 9 HELX_P HELX_P16 16 LYS B 65 ? LYS B 78 ? LYS B 65 LYS B 78 1 ? 14 HELX_P HELX_P17 17 ASN C 7 ? SER C 12 ? ASN C 7 SER C 12 5 ? 6 HELX_P HELX_P18 18 GLN C 13 ? TRP C 17 ? GLN C 13 TRP C 17 5 ? 5 HELX_P HELX_P19 19 THR C 18 ? ASP C 30 ? THR C 18 ASP C 30 1 ? 13 HELX_P HELX_P20 20 ASN C 31 ? VAL C 35 ? ASN C 31 VAL C 35 5 ? 5 HELX_P HELX_P21 21 HIS C 36 ? HIS C 43 ? HIS C 36 HIS C 43 1 ? 8 HELX_P HELX_P22 22 ASP C 46 ? LEU C 51 ? ASP C 46 LEU C 51 1 ? 6 HELX_P HELX_P23 23 ASN C 54 ? GLY C 63 ? ASN C 54 GLY C 63 1 ? 10 HELX_P HELX_P24 24 LYS C 65 ? LYS C 78 ? LYS C 65 LYS C 78 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A BME 1001 ? 4 'BINDING SITE FOR RESIDUE BME A 1001' AC2 Software B BME 1002 ? 4 'BINDING SITE FOR RESIDUE BME B 1002' AC3 Software C BME 1003 ? 4 'BINDING SITE FOR RESIDUE BME C 1003' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 LEU A 53 ? LEU A 53 . ? 1_555 ? 2 AC1 4 ASN A 54 ? ASN A 54 . ? 1_555 ? 3 AC1 4 CYS A 73 ? CYS A 73 . ? 1_555 ? 4 AC1 4 ASN A 77 ? ASN A 77 . ? 1_555 ? 5 AC2 4 LEU B 53 ? LEU B 53 . ? 1_555 ? 6 AC2 4 ASN B 54 ? ASN B 54 . ? 1_555 ? 7 AC2 4 CYS B 73 ? CYS B 73 . ? 1_555 ? 8 AC2 4 ASN B 77 ? ASN B 77 . ? 1_555 ? 9 AC3 4 LEU C 53 ? LEU C 53 . ? 1_555 ? 10 AC3 4 ASN C 54 ? ASN C 54 . ? 1_555 ? 11 AC3 4 CYS C 73 ? CYS C 73 . ? 1_555 ? 12 AC3 4 ASN C 77 ? ASN C 77 . ? 1_555 ? # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id ASP _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 30 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi -164.20 _pdbx_validate_torsion.psi 95.38 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A GLU 2 ? A GLU 2 3 1 Y 1 A LYS 3 ? A LYS 3 4 1 Y 1 A THR 4 ? A THR 4 5 1 Y 1 A GLY 81 ? A GLY 81 6 1 Y 1 A ARG 82 ? A ARG 82 7 1 Y 1 A ASP 83 ? A ASP 83 8 1 Y 1 A HIS 84 ? A HIS 84 9 1 Y 1 A HIS 85 ? A HIS 85 10 1 Y 1 A HIS 86 ? A HIS 86 11 1 Y 1 A HIS 87 ? A HIS 87 12 1 Y 1 A HIS 88 ? A HIS 88 13 1 Y 1 A HIS 89 ? A HIS 89 14 1 Y 1 B MET 1 ? B MET 1 15 1 Y 1 B GLU 2 ? B GLU 2 16 1 Y 1 B LYS 3 ? B LYS 3 17 1 Y 1 B THR 4 ? B THR 4 18 1 Y 1 B ARG 5 ? B ARG 5 19 1 Y 1 B ALA 6 ? B ALA 6 20 1 Y 1 B ASN 7 ? B ASN 7 21 1 Y 1 B SER 8 ? B SER 8 22 1 Y 1 B HIS 9 ? B HIS 9 23 1 Y 1 B LEU 10 ? B LEU 10 24 1 Y 1 B ARG 11 ? B ARG 11 25 1 Y 1 B SER 12 ? B SER 12 26 1 Y 1 B GLY 81 ? B GLY 81 27 1 Y 1 B ARG 82 ? B ARG 82 28 1 Y 1 B ASP 83 ? B ASP 83 29 1 Y 1 B HIS 84 ? B HIS 84 30 1 Y 1 B HIS 85 ? B HIS 85 31 1 Y 1 B HIS 86 ? B HIS 86 32 1 Y 1 B HIS 87 ? B HIS 87 33 1 Y 1 B HIS 88 ? B HIS 88 34 1 Y 1 B HIS 89 ? B HIS 89 35 1 Y 1 C MET 1 ? C MET 1 36 1 Y 1 C GLU 2 ? C GLU 2 37 1 Y 1 C GLY 81 ? C GLY 81 38 1 Y 1 C ARG 82 ? C ARG 82 39 1 Y 1 C ASP 83 ? C ASP 83 40 1 Y 1 C HIS 84 ? C HIS 84 41 1 Y 1 C HIS 85 ? C HIS 85 42 1 Y 1 C HIS 86 ? C HIS 86 43 1 Y 1 C HIS 87 ? C HIS 87 44 1 Y 1 C HIS 88 ? C HIS 88 45 1 Y 1 C HIS 89 ? C HIS 89 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ALA N N N N 1 ALA CA C N S 2 ALA C C N N 3 ALA O O N N 4 ALA CB C N N 5 ALA OXT O N N 6 ALA H H N N 7 ALA H2 H N N 8 ALA HA H N N 9 ALA HB1 H N N 10 ALA HB2 H N N 11 ALA HB3 H N N 12 ALA HXT H N N 13 ARG N N N N 14 ARG CA C N S 15 ARG C C N N 16 ARG O O N N 17 ARG CB C N N 18 ARG CG C N N 19 ARG CD C N N 20 ARG NE N N N 21 ARG CZ C N N 22 ARG NH1 N N N 23 ARG NH2 N N N 24 ARG OXT O N N 25 ARG H H N N 26 ARG H2 H N N 27 ARG HA H N N 28 ARG HB2 H N N 29 ARG HB3 H N N 30 ARG HG2 H N N 31 ARG HG3 H N N 32 ARG HD2 H N N 33 ARG HD3 H N N 34 ARG HE H N N 35 ARG HH11 H N N 36 ARG HH12 H N N 37 ARG HH21 H N N 38 ARG HH22 H N N 39 ARG HXT H N N 40 ASN N N N N 41 ASN CA C N S 42 ASN C C N N 43 ASN O O N N 44 ASN CB C N N 45 ASN CG C N N 46 ASN OD1 O N N 47 ASN ND2 N N N 48 ASN OXT O N N 49 ASN H H N N 50 ASN H2 H N N 51 ASN HA H N N 52 ASN HB2 H N N 53 ASN HB3 H N N 54 ASN HD21 H N N 55 ASN HD22 H N N 56 ASN HXT H N N 57 ASP N N N N 58 ASP CA C N S 59 ASP C C N N 60 ASP O O N N 61 ASP CB C N N 62 ASP CG C N N 63 ASP OD1 O N N 64 ASP OD2 O N N 65 ASP OXT O N N 66 ASP H H N N 67 ASP H2 H N N 68 ASP HA H N N 69 ASP HB2 H N N 70 ASP HB3 H N N 71 ASP HD2 H N N 72 ASP HXT H N N 73 BME C1 C N N 74 BME C2 C N N 75 BME O1 O N N 76 BME S2 S N N 77 BME H11 H N N 78 BME H12 H N N 79 BME H21 H N N 80 BME H22 H N N 81 BME HO1 H N N 82 BME HS2 H N N 83 CYS N N N N 84 CYS CA C N R 85 CYS C C N N 86 CYS O O N N 87 CYS CB C N N 88 CYS SG S N N 89 CYS OXT O N N 90 CYS H H N N 91 CYS H2 H N N 92 CYS HA H N N 93 CYS HB2 H N N 94 CYS HB3 H N N 95 CYS HG H N N 96 CYS HXT H N N 97 GLN N N N N 98 GLN CA C N S 99 GLN C C N N 100 GLN O O N N 101 GLN CB C N N 102 GLN CG C N N 103 GLN CD C N N 104 GLN OE1 O N N 105 GLN NE2 N N N 106 GLN OXT O N N 107 GLN H H N N 108 GLN H2 H N N 109 GLN HA H N N 110 GLN HB2 H N N 111 GLN HB3 H N N 112 GLN HG2 H N N 113 GLN HG3 H N N 114 GLN HE21 H N N 115 GLN HE22 H N N 116 GLN HXT H N N 117 GLU N N N N 118 GLU CA C N S 119 GLU C C N N 120 GLU O O N N 121 GLU CB C N N 122 GLU CG C N N 123 GLU CD C N N 124 GLU OE1 O N N 125 GLU OE2 O N N 126 GLU OXT O N N 127 GLU H H N N 128 GLU H2 H N N 129 GLU HA H N N 130 GLU HB2 H N N 131 GLU HB3 H N N 132 GLU HG2 H N N 133 GLU HG3 H N N 134 GLU HE2 H N N 135 GLU HXT H N N 136 GLY N N N N 137 GLY CA C N N 138 GLY C C N N 139 GLY O O N N 140 GLY OXT O N N 141 GLY H H N N 142 GLY H2 H N N 143 GLY HA2 H N N 144 GLY HA3 H N N 145 GLY HXT H N N 146 HIS N N N N 147 HIS CA C N S 148 HIS C C N N 149 HIS O O N N 150 HIS CB C N N 151 HIS CG C Y N 152 HIS ND1 N Y N 153 HIS CD2 C Y N 154 HIS CE1 C Y N 155 HIS NE2 N Y N 156 HIS OXT O N N 157 HIS H H N N 158 HIS H2 H N N 159 HIS HA H N N 160 HIS HB2 H N N 161 HIS HB3 H N N 162 HIS HD1 H N N 163 HIS HD2 H N N 164 HIS HE1 H N N 165 HIS HE2 H N N 166 HIS HXT H N N 167 HOH O O N N 168 HOH H1 H N N 169 HOH H2 H N N 170 ILE N N N N 171 ILE CA C N S 172 ILE C C N N 173 ILE O O N N 174 ILE CB C N S 175 ILE CG1 C N N 176 ILE CG2 C N N 177 ILE CD1 C N N 178 ILE OXT O N N 179 ILE H H N N 180 ILE H2 H N N 181 ILE HA H N N 182 ILE HB H N N 183 ILE HG12 H N N 184 ILE HG13 H N N 185 ILE HG21 H N N 186 ILE HG22 H N N 187 ILE HG23 H N N 188 ILE HD11 H N N 189 ILE HD12 H N N 190 ILE HD13 H N N 191 ILE HXT H N N 192 LEU N N N N 193 LEU CA C N S 194 LEU C C N N 195 LEU O O N N 196 LEU CB C N N 197 LEU CG C N N 198 LEU CD1 C N N 199 LEU CD2 C N N 200 LEU OXT O N N 201 LEU H H N N 202 LEU H2 H N N 203 LEU HA H N N 204 LEU HB2 H N N 205 LEU HB3 H N N 206 LEU HG H N N 207 LEU HD11 H N N 208 LEU HD12 H N N 209 LEU HD13 H N N 210 LEU HD21 H N N 211 LEU HD22 H N N 212 LEU HD23 H N N 213 LEU HXT H N N 214 LYS N N N N 215 LYS CA C N S 216 LYS C C N N 217 LYS O O N N 218 LYS CB C N N 219 LYS CG C N N 220 LYS CD C N N 221 LYS CE C N N 222 LYS NZ N N N 223 LYS OXT O N N 224 LYS H H N N 225 LYS H2 H N N 226 LYS HA H N N 227 LYS HB2 H N N 228 LYS HB3 H N N 229 LYS HG2 H N N 230 LYS HG3 H N N 231 LYS HD2 H N N 232 LYS HD3 H N N 233 LYS HE2 H N N 234 LYS HE3 H N N 235 LYS HZ1 H N N 236 LYS HZ2 H N N 237 LYS HZ3 H N N 238 LYS HXT H N N 239 MET N N N N 240 MET CA C N S 241 MET C C N N 242 MET O O N N 243 MET CB C N N 244 MET CG C N N 245 MET SD S N N 246 MET CE C N N 247 MET OXT O N N 248 MET H H N N 249 MET H2 H N N 250 MET HA H N N 251 MET HB2 H N N 252 MET HB3 H N N 253 MET HG2 H N N 254 MET HG3 H N N 255 MET HE1 H N N 256 MET HE2 H N N 257 MET HE3 H N N 258 MET HXT H N N 259 PHE N N N N 260 PHE CA C N S 261 PHE C C N N 262 PHE O O N N 263 PHE CB C N N 264 PHE CG C Y N 265 PHE CD1 C Y N 266 PHE CD2 C Y N 267 PHE CE1 C Y N 268 PHE CE2 C Y N 269 PHE CZ C Y N 270 PHE OXT O N N 271 PHE H H N N 272 PHE H2 H N N 273 PHE HA H N N 274 PHE HB2 H N N 275 PHE HB3 H N N 276 PHE HD1 H N N 277 PHE HD2 H N N 278 PHE HE1 H N N 279 PHE HE2 H N N 280 PHE HZ H N N 281 PHE HXT H N N 282 PRO N N N N 283 PRO CA C N S 284 PRO C C N N 285 PRO O O N N 286 PRO CB C N N 287 PRO CG C N N 288 PRO CD C N N 289 PRO OXT O N N 290 PRO H H N N 291 PRO HA H N N 292 PRO HB2 H N N 293 PRO HB3 H N N 294 PRO HG2 H N N 295 PRO HG3 H N N 296 PRO HD2 H N N 297 PRO HD3 H N N 298 PRO HXT H N N 299 SER N N N N 300 SER CA C N S 301 SER C C N N 302 SER O O N N 303 SER CB C N N 304 SER OG O N N 305 SER OXT O N N 306 SER H H N N 307 SER H2 H N N 308 SER HA H N N 309 SER HB2 H N N 310 SER HB3 H N N 311 SER HG H N N 312 SER HXT H N N 313 THR N N N N 314 THR CA C N S 315 THR C C N N 316 THR O O N N 317 THR CB C N R 318 THR OG1 O N N 319 THR CG2 C N N 320 THR OXT O N N 321 THR H H N N 322 THR H2 H N N 323 THR HA H N N 324 THR HB H N N 325 THR HG1 H N N 326 THR HG21 H N N 327 THR HG22 H N N 328 THR HG23 H N N 329 THR HXT H N N 330 TRP N N N N 331 TRP CA C N S 332 TRP C C N N 333 TRP O O N N 334 TRP CB C N N 335 TRP CG C Y N 336 TRP CD1 C Y N 337 TRP CD2 C Y N 338 TRP NE1 N Y N 339 TRP CE2 C Y N 340 TRP CE3 C Y N 341 TRP CZ2 C Y N 342 TRP CZ3 C Y N 343 TRP CH2 C Y N 344 TRP OXT O N N 345 TRP H H N N 346 TRP H2 H N N 347 TRP HA H N N 348 TRP HB2 H N N 349 TRP HB3 H N N 350 TRP HD1 H N N 351 TRP HE1 H N N 352 TRP HE3 H N N 353 TRP HZ2 H N N 354 TRP HZ3 H N N 355 TRP HH2 H N N 356 TRP HXT H N N 357 TYR N N N N 358 TYR CA C N S 359 TYR C C N N 360 TYR O O N N 361 TYR CB C N N 362 TYR CG C Y N 363 TYR CD1 C Y N 364 TYR CD2 C Y N 365 TYR CE1 C Y N 366 TYR CE2 C Y N 367 TYR CZ C Y N 368 TYR OH O N N 369 TYR OXT O N N 370 TYR H H N N 371 TYR H2 H N N 372 TYR HA H N N 373 TYR HB2 H N N 374 TYR HB3 H N N 375 TYR HD1 H N N 376 TYR HD2 H N N 377 TYR HE1 H N N 378 TYR HE2 H N N 379 TYR HH H N N 380 TYR HXT H N N 381 VAL N N N N 382 VAL CA C N S 383 VAL C C N N 384 VAL O O N N 385 VAL CB C N N 386 VAL CG1 C N N 387 VAL CG2 C N N 388 VAL OXT O N N 389 VAL H H N N 390 VAL H2 H N N 391 VAL HA H N N 392 VAL HB H N N 393 VAL HG11 H N N 394 VAL HG12 H N N 395 VAL HG13 H N N 396 VAL HG21 H N N 397 VAL HG22 H N N 398 VAL HG23 H N N 399 VAL HXT H N N 400 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ALA N CA sing N N 1 ALA N H sing N N 2 ALA N H2 sing N N 3 ALA CA C sing N N 4 ALA CA CB sing N N 5 ALA CA HA sing N N 6 ALA C O doub N N 7 ALA C OXT sing N N 8 ALA CB HB1 sing N N 9 ALA CB HB2 sing N N 10 ALA CB HB3 sing N N 11 ALA OXT HXT sing N N 12 ARG N CA sing N N 13 ARG N H sing N N 14 ARG N H2 sing N N 15 ARG CA C sing N N 16 ARG CA CB sing N N 17 ARG CA HA sing N N 18 ARG C O doub N N 19 ARG C OXT sing N N 20 ARG CB CG sing N N 21 ARG CB HB2 sing N N 22 ARG CB HB3 sing N N 23 ARG CG CD sing N N 24 ARG CG HG2 sing N N 25 ARG CG HG3 sing N N 26 ARG CD NE sing N N 27 ARG CD HD2 sing N N 28 ARG CD HD3 sing N N 29 ARG NE CZ sing N N 30 ARG NE HE sing N N 31 ARG CZ NH1 sing N N 32 ARG CZ NH2 doub N N 33 ARG NH1 HH11 sing N N 34 ARG NH1 HH12 sing N N 35 ARG NH2 HH21 sing N N 36 ARG NH2 HH22 sing N N 37 ARG OXT HXT sing N N 38 ASN N CA sing N N 39 ASN N H sing N N 40 ASN N H2 sing N N 41 ASN CA C sing N N 42 ASN CA CB sing N N 43 ASN CA HA sing N N 44 ASN C O doub N N 45 ASN C OXT sing N N 46 ASN CB CG sing N N 47 ASN CB HB2 sing N N 48 ASN CB HB3 sing N N 49 ASN CG OD1 doub N N 50 ASN CG ND2 sing N N 51 ASN ND2 HD21 sing N N 52 ASN ND2 HD22 sing N N 53 ASN OXT HXT sing N N 54 ASP N CA sing N N 55 ASP N H sing N N 56 ASP N H2 sing N N 57 ASP CA C sing N N 58 ASP CA CB sing N N 59 ASP CA HA sing N N 60 ASP C O doub N N 61 ASP C OXT sing N N 62 ASP CB CG sing N N 63 ASP CB HB2 sing N N 64 ASP CB HB3 sing N N 65 ASP CG OD1 doub N N 66 ASP CG OD2 sing N N 67 ASP OD2 HD2 sing N N 68 ASP OXT HXT sing N N 69 BME C1 C2 sing N N 70 BME C1 O1 sing N N 71 BME C1 H11 sing N N 72 BME C1 H12 sing N N 73 BME C2 S2 sing N N 74 BME C2 H21 sing N N 75 BME C2 H22 sing N N 76 BME O1 HO1 sing N N 77 BME S2 HS2 sing N N 78 CYS N CA sing N N 79 CYS N H sing N N 80 CYS N H2 sing N N 81 CYS CA C sing N N 82 CYS CA CB sing N N 83 CYS CA HA sing N N 84 CYS C O doub N N 85 CYS C OXT sing N N 86 CYS CB SG sing N N 87 CYS CB HB2 sing N N 88 CYS CB HB3 sing N N 89 CYS SG HG sing N N 90 CYS OXT HXT sing N N 91 GLN N CA sing N N 92 GLN N H sing N N 93 GLN N H2 sing N N 94 GLN CA C sing N N 95 GLN CA CB sing N N 96 GLN CA HA sing N N 97 GLN C O doub N N 98 GLN C OXT sing N N 99 GLN CB CG sing N N 100 GLN CB HB2 sing N N 101 GLN CB HB3 sing N N 102 GLN CG CD sing N N 103 GLN CG HG2 sing N N 104 GLN CG HG3 sing N N 105 GLN CD OE1 doub N N 106 GLN CD NE2 sing N N 107 GLN NE2 HE21 sing N N 108 GLN NE2 HE22 sing N N 109 GLN OXT HXT sing N N 110 GLU N CA sing N N 111 GLU N H sing N N 112 GLU N H2 sing N N 113 GLU CA C sing N N 114 GLU CA CB sing N N 115 GLU CA HA sing N N 116 GLU C O doub N N 117 GLU C OXT sing N N 118 GLU CB CG sing N N 119 GLU CB HB2 sing N N 120 GLU CB HB3 sing N N 121 GLU CG CD sing N N 122 GLU CG HG2 sing N N 123 GLU CG HG3 sing N N 124 GLU CD OE1 doub N N 125 GLU CD OE2 sing N N 126 GLU OE2 HE2 sing N N 127 GLU OXT HXT sing N N 128 GLY N CA sing N N 129 GLY N H sing N N 130 GLY N H2 sing N N 131 GLY CA C sing N N 132 GLY CA HA2 sing N N 133 GLY CA HA3 sing N N 134 GLY C O doub N N 135 GLY C OXT sing N N 136 GLY OXT HXT sing N N 137 HIS N CA sing N N 138 HIS N H sing N N 139 HIS N H2 sing N N 140 HIS CA C sing N N 141 HIS CA CB sing N N 142 HIS CA HA sing N N 143 HIS C O doub N N 144 HIS C OXT sing N N 145 HIS CB CG sing N N 146 HIS CB HB2 sing N N 147 HIS CB HB3 sing N N 148 HIS CG ND1 sing Y N 149 HIS CG CD2 doub Y N 150 HIS ND1 CE1 doub Y N 151 HIS ND1 HD1 sing N N 152 HIS CD2 NE2 sing Y N 153 HIS CD2 HD2 sing N N 154 HIS CE1 NE2 sing Y N 155 HIS CE1 HE1 sing N N 156 HIS NE2 HE2 sing N N 157 HIS OXT HXT sing N N 158 HOH O H1 sing N N 159 HOH O H2 sing N N 160 ILE N CA sing N N 161 ILE N H sing N N 162 ILE N H2 sing N N 163 ILE CA C sing N N 164 ILE CA CB sing N N 165 ILE CA HA sing N N 166 ILE C O doub N N 167 ILE C OXT sing N N 168 ILE CB CG1 sing N N 169 ILE CB CG2 sing N N 170 ILE CB HB sing N N 171 ILE CG1 CD1 sing N N 172 ILE CG1 HG12 sing N N 173 ILE CG1 HG13 sing N N 174 ILE CG2 HG21 sing N N 175 ILE CG2 HG22 sing N N 176 ILE CG2 HG23 sing N N 177 ILE CD1 HD11 sing N N 178 ILE CD1 HD12 sing N N 179 ILE CD1 HD13 sing N N 180 ILE OXT HXT sing N N 181 LEU N CA sing N N 182 LEU N H sing N N 183 LEU N H2 sing N N 184 LEU CA C sing N N 185 LEU CA CB sing N N 186 LEU CA HA sing N N 187 LEU C O doub N N 188 LEU C OXT sing N N 189 LEU CB CG sing N N 190 LEU CB HB2 sing N N 191 LEU CB HB3 sing N N 192 LEU CG CD1 sing N N 193 LEU CG CD2 sing N N 194 LEU CG HG sing N N 195 LEU CD1 HD11 sing N N 196 LEU CD1 HD12 sing N N 197 LEU CD1 HD13 sing N N 198 LEU CD2 HD21 sing N N 199 LEU CD2 HD22 sing N N 200 LEU CD2 HD23 sing N N 201 LEU OXT HXT sing N N 202 LYS N CA sing N N 203 LYS N H sing N N 204 LYS N H2 sing N N 205 LYS CA C sing N N 206 LYS CA CB sing N N 207 LYS CA HA sing N N 208 LYS C O doub N N 209 LYS C OXT sing N N 210 LYS CB CG sing N N 211 LYS CB HB2 sing N N 212 LYS CB HB3 sing N N 213 LYS CG CD sing N N 214 LYS CG HG2 sing N N 215 LYS CG HG3 sing N N 216 LYS CD CE sing N N 217 LYS CD HD2 sing N N 218 LYS CD HD3 sing N N 219 LYS CE NZ sing N N 220 LYS CE HE2 sing N N 221 LYS CE HE3 sing N N 222 LYS NZ HZ1 sing N N 223 LYS NZ HZ2 sing N N 224 LYS NZ HZ3 sing N N 225 LYS OXT HXT sing N N 226 MET N CA sing N N 227 MET N H sing N N 228 MET N H2 sing N N 229 MET CA C sing N N 230 MET CA CB sing N N 231 MET CA HA sing N N 232 MET C O doub N N 233 MET C OXT sing N N 234 MET CB CG sing N N 235 MET CB HB2 sing N N 236 MET CB HB3 sing N N 237 MET CG SD sing N N 238 MET CG HG2 sing N N 239 MET CG HG3 sing N N 240 MET SD CE sing N N 241 MET CE HE1 sing N N 242 MET CE HE2 sing N N 243 MET CE HE3 sing N N 244 MET OXT HXT sing N N 245 PHE N CA sing N N 246 PHE N H sing N N 247 PHE N H2 sing N N 248 PHE CA C sing N N 249 PHE CA CB sing N N 250 PHE CA HA sing N N 251 PHE C O doub N N 252 PHE C OXT sing N N 253 PHE CB CG sing N N 254 PHE CB HB2 sing N N 255 PHE CB HB3 sing N N 256 PHE CG CD1 doub Y N 257 PHE CG CD2 sing Y N 258 PHE CD1 CE1 sing Y N 259 PHE CD1 HD1 sing N N 260 PHE CD2 CE2 doub Y N 261 PHE CD2 HD2 sing N N 262 PHE CE1 CZ doub Y N 263 PHE CE1 HE1 sing N N 264 PHE CE2 CZ sing Y N 265 PHE CE2 HE2 sing N N 266 PHE CZ HZ sing N N 267 PHE OXT HXT sing N N 268 PRO N CA sing N N 269 PRO N CD sing N N 270 PRO N H sing N N 271 PRO CA C sing N N 272 PRO CA CB sing N N 273 PRO CA HA sing N N 274 PRO C O doub N N 275 PRO C OXT sing N N 276 PRO CB CG sing N N 277 PRO CB HB2 sing N N 278 PRO CB HB3 sing N N 279 PRO CG CD sing N N 280 PRO CG HG2 sing N N 281 PRO CG HG3 sing N N 282 PRO CD HD2 sing N N 283 PRO CD HD3 sing N N 284 PRO OXT HXT sing N N 285 SER N CA sing N N 286 SER N H sing N N 287 SER N H2 sing N N 288 SER CA C sing N N 289 SER CA CB sing N N 290 SER CA HA sing N N 291 SER C O doub N N 292 SER C OXT sing N N 293 SER CB OG sing N N 294 SER CB HB2 sing N N 295 SER CB HB3 sing N N 296 SER OG HG sing N N 297 SER OXT HXT sing N N 298 THR N CA sing N N 299 THR N H sing N N 300 THR N H2 sing N N 301 THR CA C sing N N 302 THR CA CB sing N N 303 THR CA HA sing N N 304 THR C O doub N N 305 THR C OXT sing N N 306 THR CB OG1 sing N N 307 THR CB CG2 sing N N 308 THR CB HB sing N N 309 THR OG1 HG1 sing N N 310 THR CG2 HG21 sing N N 311 THR CG2 HG22 sing N N 312 THR CG2 HG23 sing N N 313 THR OXT HXT sing N N 314 TRP N CA sing N N 315 TRP N H sing N N 316 TRP N H2 sing N N 317 TRP CA C sing N N 318 TRP CA CB sing N N 319 TRP CA HA sing N N 320 TRP C O doub N N 321 TRP C OXT sing N N 322 TRP CB CG sing N N 323 TRP CB HB2 sing N N 324 TRP CB HB3 sing N N 325 TRP CG CD1 doub Y N 326 TRP CG CD2 sing Y N 327 TRP CD1 NE1 sing Y N 328 TRP CD1 HD1 sing N N 329 TRP CD2 CE2 doub Y N 330 TRP CD2 CE3 sing Y N 331 TRP NE1 CE2 sing Y N 332 TRP NE1 HE1 sing N N 333 TRP CE2 CZ2 sing Y N 334 TRP CE3 CZ3 doub Y N 335 TRP CE3 HE3 sing N N 336 TRP CZ2 CH2 doub Y N 337 TRP CZ2 HZ2 sing N N 338 TRP CZ3 CH2 sing Y N 339 TRP CZ3 HZ3 sing N N 340 TRP CH2 HH2 sing N N 341 TRP OXT HXT sing N N 342 TYR N CA sing N N 343 TYR N H sing N N 344 TYR N H2 sing N N 345 TYR CA C sing N N 346 TYR CA CB sing N N 347 TYR CA HA sing N N 348 TYR C O doub N N 349 TYR C OXT sing N N 350 TYR CB CG sing N N 351 TYR CB HB2 sing N N 352 TYR CB HB3 sing N N 353 TYR CG CD1 doub Y N 354 TYR CG CD2 sing Y N 355 TYR CD1 CE1 sing Y N 356 TYR CD1 HD1 sing N N 357 TYR CD2 CE2 doub Y N 358 TYR CD2 HD2 sing N N 359 TYR CE1 CZ doub Y N 360 TYR CE1 HE1 sing N N 361 TYR CE2 CZ sing Y N 362 TYR CE2 HE2 sing N N 363 TYR CZ OH sing N N 364 TYR OH HH sing N N 365 TYR OXT HXT sing N N 366 VAL N CA sing N N 367 VAL N H sing N N 368 VAL N H2 sing N N 369 VAL CA C sing N N 370 VAL CA CB sing N N 371 VAL CA HA sing N N 372 VAL C O doub N N 373 VAL C OXT sing N N 374 VAL CB CG1 sing N N 375 VAL CB CG2 sing N N 376 VAL CB HB sing N N 377 VAL CG1 HG11 sing N N 378 VAL CG1 HG12 sing N N 379 VAL CG1 HG13 sing N N 380 VAL CG2 HG21 sing N N 381 VAL CG2 HG22 sing N N 382 VAL CG2 HG23 sing N N 383 VAL OXT HXT sing N N 384 # _atom_sites.entry_id 1PK3 _atom_sites.fract_transf_matrix[1][1] 0.019175 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015627 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009649 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_