HEADER OXIDOREDUCTASE 12-JUN-03 1PNQ TITLE CRYSTAL STRUCTURE OF R. RUBRUM TRANSHYDROGENASE DOMAIN III BOUND TO TITLE 2 NADPH COMPND MOL_ID: 1; COMPND 2 MOLECULE: NAD(P) TRANSHYDROGENASE SUBUNIT BETA; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PYRIDINE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT BETA, COMPND 5 NICOTINAMIDE NUCLEOTIDE TRANSHYDROGENASE SUBUNIT BETA, PROTON- COMPND 6 TRANSLOCATING TRANSHYDROGENASE NADP(H)-BINDING COMPONENT, DIII; COMPND 7 EC: 1.6.1.2; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOSPIRILLUM RUBRUM; SOURCE 3 ORGANISM_TAXID: 1085; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NUCLEOTIDE BINDING FOLD, NADPH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR V.SUNDARESAN,M.YAMAGUCHI,J.CHARTRON,C.D.STOUT REVDAT 3 14-FEB-24 1PNQ 1 REMARK SEQADV REVDAT 2 24-FEB-09 1PNQ 1 VERSN REVDAT 1 11-NOV-03 1PNQ 0 JRNL AUTH V.SUNDARESAN,M.YAMAGUCHI,J.CHARTRON,C.D.STOUT JRNL TITL CONFORMATIONAL CHANGE IN THE NADP(H) BINDING DOMAIN OF JRNL TITL 2 TRANSHYDROGENASE DEFINES FOUR STATES JRNL REF BIOCHEMISTRY V. 42 12143 2003 JRNL REFN ISSN 0006-2960 JRNL PMID 14567675 JRNL DOI 10.1021/BI035006Q REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2344125.440 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.9 REMARK 3 NUMBER OF REFLECTIONS : 34733 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.215 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1716 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.55 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5144 REMARK 3 BIN R VALUE (WORKING SET) : 0.3400 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.80 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 261 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2698 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 96 REMARK 3 SOLVENT ATOMS : 165 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 50.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 58.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.41 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 23.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.870 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.360 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.370 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.950 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.100 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.34 REMARK 3 BSOL : 41.75 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NADPH.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NADPH.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1PNQ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-03. REMARK 100 THE DEPOSITION ID IS D_1000019448. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-02 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34800 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 19.650 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : 0.08500 REMARK 200 FOR THE DATA SET : 17.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.46 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BEAST REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, CITRATE, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 281K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.94333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 141.88667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 106.41500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 177.35833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 35.47167 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 70.94333 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 141.88667 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 177.35833 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 106.41500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 35.47167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 122 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 73 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 285 REMARK 465 GLY B 286 REMARK 465 HIS B 287 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 436 O HOH B 165 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER A 285 C GLY A 286 N 0.238 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 286 C - N - CA ANGL. DEV. = -15.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ILE A 376 -3.71 -154.79 REMARK 500 ASN A 392 -81.05 -149.86 REMARK 500 LYS A 417 -3.87 -59.90 REMARK 500 SER A 427 -154.71 -156.70 REMARK 500 ASP B 368 2.32 -68.94 REMARK 500 ILE B 376 -30.32 -136.79 REMARK 500 ASN B 392 -75.83 -154.83 REMARK 500 ALA B 398 -2.33 -55.48 REMARK 500 LYS B 400 28.78 -152.21 REMARK 500 THR B 401 -10.51 -151.26 REMARK 500 PRO B 403 -12.92 -48.46 REMARK 500 SER B 427 -159.08 -156.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 291 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NDP B 500 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1PNO RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND TO NADP DBREF 1PNQ A 294 464 UNP Q59765 PNTB_RHORU 294 464 DBREF 1PNQ B 294 464 UNP Q59765 PNTB_RHORU 294 464 SEQADV 1PNQ SER A 285 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ GLY A 286 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ HIS A 287 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ ILE A 288 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ GLU A 289 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ GLY A 290 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ ARG A 291 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ HIS A 292 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ MET A 293 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ SER B 285 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ GLY B 286 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ HIS B 287 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ ILE B 288 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ GLU B 289 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ GLY B 290 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ ARG B 291 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ HIS B 292 UNP Q59765 CLONING ARTIFACT SEQADV 1PNQ MET B 293 UNP Q59765 CLONING ARTIFACT SEQRES 1 A 180 SER GLY HIS ILE GLU GLY ARG HIS MET ALA GLY SER ALA SEQRES 2 A 180 GLU ASP ALA ALA PHE ILE MET LYS ASN ALA SER LYS VAL SEQRES 3 A 180 ILE ILE VAL PRO GLY TYR GLY MET ALA VAL ALA GLN ALA SEQRES 4 A 180 GLN HIS ALA LEU ARG GLU MET ALA ASP VAL LEU LYS LYS SEQRES 5 A 180 GLU GLY VAL GLU VAL SER TYR ALA ILE HIS PRO VAL ALA SEQRES 6 A 180 GLY ARG MET PRO GLY HIS MET ASN VAL LEU LEU ALA GLU SEQRES 7 A 180 ALA ASN VAL PRO TYR ASP GLU VAL PHE GLU LEU GLU GLU SEQRES 8 A 180 ILE ASN SER SER PHE GLN THR ALA ASP VAL ALA PHE VAL SEQRES 9 A 180 ILE GLY ALA ASN ASP VAL THR ASN PRO ALA ALA LYS THR SEQRES 10 A 180 ASP PRO SER SER PRO ILE TYR GLY MET PRO ILE LEU ASP SEQRES 11 A 180 VAL GLU LYS ALA GLY THR VAL LEU PHE ILE LYS ARG SER SEQRES 12 A 180 MET ALA SER GLY TYR ALA GLY VAL GLU ASN GLU LEU PHE SEQRES 13 A 180 PHE ARG ASN ASN THR MET MET LEU PHE GLY ASP ALA LYS SEQRES 14 A 180 LYS MET THR GLU GLN ILE VAL GLN ALA MET ASN SEQRES 1 B 180 SER GLY HIS ILE GLU GLY ARG HIS MET ALA GLY SER ALA SEQRES 2 B 180 GLU ASP ALA ALA PHE ILE MET LYS ASN ALA SER LYS VAL SEQRES 3 B 180 ILE ILE VAL PRO GLY TYR GLY MET ALA VAL ALA GLN ALA SEQRES 4 B 180 GLN HIS ALA LEU ARG GLU MET ALA ASP VAL LEU LYS LYS SEQRES 5 B 180 GLU GLY VAL GLU VAL SER TYR ALA ILE HIS PRO VAL ALA SEQRES 6 B 180 GLY ARG MET PRO GLY HIS MET ASN VAL LEU LEU ALA GLU SEQRES 7 B 180 ALA ASN VAL PRO TYR ASP GLU VAL PHE GLU LEU GLU GLU SEQRES 8 B 180 ILE ASN SER SER PHE GLN THR ALA ASP VAL ALA PHE VAL SEQRES 9 B 180 ILE GLY ALA ASN ASP VAL THR ASN PRO ALA ALA LYS THR SEQRES 10 B 180 ASP PRO SER SER PRO ILE TYR GLY MET PRO ILE LEU ASP SEQRES 11 B 180 VAL GLU LYS ALA GLY THR VAL LEU PHE ILE LYS ARG SER SEQRES 12 B 180 MET ALA SER GLY TYR ALA GLY VAL GLU ASN GLU LEU PHE SEQRES 13 B 180 PHE ARG ASN ASN THR MET MET LEU PHE GLY ASP ALA LYS SEQRES 14 B 180 LYS MET THR GLU GLN ILE VAL GLN ALA MET ASN HET NDP A 500 48 HET NDP B 500 48 HETNAM NDP NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE HETNAM 2 NDP PHOSPHATE FORMUL 3 NDP 2(C21 H30 N7 O17 P3) FORMUL 5 HOH *165(H2 O) HELIX 1 1 SER A 296 ASN A 306 1 11 HELIX 2 2 GLY A 315 GLN A 322 1 8 HELIX 3 3 ALA A 323 GLU A 337 1 15 HELIX 4 4 GLY A 354 ALA A 363 1 10 HELIX 5 5 PRO A 366 ASP A 368 5 3 HELIX 6 6 GLU A 374 GLN A 381 5 8 HELIX 7 7 ASN A 396 LYS A 400 5 5 HELIX 8 8 ASN A 437 ARG A 442 5 6 HELIX 9 9 ASP A 451 ASN A 464 1 14 HELIX 10 10 SER B 296 ASN B 306 1 11 HELIX 11 11 GLY B 315 GLN B 322 1 8 HELIX 12 12 ALA B 323 GLU B 337 1 15 HELIX 13 13 GLY B 354 ALA B 363 1 10 HELIX 14 14 PRO B 366 ASP B 368 5 3 HELIX 15 15 ILE B 376 ALA B 383 5 8 HELIX 16 16 ASN B 392 LYS B 400 5 9 HELIX 17 17 ASP B 414 ALA B 418 5 5 HELIX 18 18 ASN B 437 ARG B 442 5 6 HELIX 19 19 ASP B 451 MET B 463 1 13 SHEET 1 A 8 HIS A 287 GLU A 289 0 SHEET 2 A 8 HIS A 292 ALA A 294 -1 O ALA A 294 N HIS A 287 SHEET 3 A 8 THR A 445 PHE A 449 1 O MET A 447 N MET A 293 SHEET 4 A 8 THR A 420 LYS A 425 1 N PHE A 423 O LEU A 448 SHEET 5 A 8 VAL A 385 ILE A 389 1 N VAL A 388 O LEU A 422 SHEET 6 A 8 LYS A 309 PRO A 314 1 N VAL A 313 O PHE A 387 SHEET 7 A 8 GLU A 340 ILE A 345 1 O GLU A 340 N VAL A 310 SHEET 8 A 8 VAL A 370 GLU A 372 1 O PHE A 371 N ILE A 345 SHEET 1 B 7 MET B 293 ALA B 294 0 SHEET 2 B 7 THR B 445 PHE B 449 1 O MET B 447 N MET B 293 SHEET 3 B 7 THR B 420 LYS B 425 1 N PHE B 423 O LEU B 448 SHEET 4 B 7 VAL B 385 ILE B 389 1 N VAL B 388 O LEU B 422 SHEET 5 B 7 LYS B 309 PRO B 314 1 N VAL B 313 O PHE B 387 SHEET 6 B 7 GLU B 340 ILE B 345 1 O ALA B 344 N ILE B 312 SHEET 7 B 7 VAL B 370 GLU B 372 1 O PHE B 371 N ILE B 345 SITE 1 AC1 30 HOH A 5 HOH A 7 HOH A 9 HOH A 24 SITE 2 AC1 30 HOH A 146 GLY A 315 TYR A 316 GLY A 317 SITE 3 AC1 30 VAL A 348 ALA A 349 GLY A 350 ARG A 351 SITE 4 AC1 30 MET A 352 PRO A 353 GLY A 390 ALA A 391 SITE 5 AC1 30 ASN A 392 ASP A 393 VAL A 394 PRO A 406 SITE 6 AC1 30 ILE A 407 LYS A 425 ARG A 426 SER A 427 SITE 7 AC1 30 ALA A 429 SER A 430 GLY A 431 TYR A 432 SITE 8 AC1 30 ASP A 451 ALA A 452 SITE 1 AC2 25 HOH B 113 GLY B 315 TYR B 316 GLY B 317 SITE 2 AC2 25 VAL B 348 ALA B 349 GLY B 350 ARG B 351 SITE 3 AC2 25 MET B 352 PRO B 353 GLY B 390 ALA B 391 SITE 4 AC2 25 ASN B 392 ASP B 393 VAL B 394 LYS B 425 SITE 5 AC2 25 ARG B 426 SER B 427 ALA B 429 SER B 430 SITE 6 AC2 25 GLY B 431 TYR B 432 GLY B 450 ASP B 451 SITE 7 AC2 25 ALA B 452 CRYST1 118.270 118.270 212.830 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008455 0.004882 0.000000 0.00000 SCALE2 0.000000 0.009763 0.000000 0.00000 SCALE3 0.000000 0.000000 0.004699 0.00000